Wall clock time and date at job start Tue Mar 31 2020 12:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 117.00088 * 2 1 4 4 O 1.20833 * 119.99918 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00091 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.45384 * 29.53165 * 5 3 2 7 7 C 1.53043 * 109.46721 * 269.55701 * 5 3 2 8 8 H 1.08992 * 109.49995 * 300.74887 * 7 5 3 9 9 O 1.42899 * 109.49909 * 60.82549 * 7 5 3 10 10 C 1.53113 * 109.27668 * 180.80158 * 7 5 3 11 11 C 1.53121 * 109.16253 * 57.66016 * 10 7 5 12 12 C 1.53038 * 109.27649 * 302.34098 * 11 10 7 13 13 N 1.46850 * 109.46130 * 149.50329 * 5 3 2 14 14 C 1.46898 * 110.99976 * 305.85423 * 13 5 3 15 15 C 1.50702 * 109.46859 * 164.42038 * 14 13 5 16 16 C 1.38634 * 119.74977 * 269.72685 * 15 14 13 17 17 C 1.37614 * 120.24757 * 179.76676 * 16 15 14 18 18 C 1.40718 * 119.74814 * 0.48605 * 17 16 15 19 19 C 1.41391 * 120.24974 * 179.78771 * 18 17 16 20 20 H 1.08002 * 119.99742 * 27.20023 * 19 18 17 21 21 C 1.39943 * 120.00098 * 207.19415 * 19 18 17 22 22 N 1.30824 * 120.00200 * 11.97854 * 21 19 18 23 23 Si 1.86804 * 119.99916 * 191.97639 * 21 19 18 24 24 H 1.48500 * 109.47270 * 90.00288 * 23 21 19 25 25 H 1.48504 * 109.46907 * 210.00303 * 23 21 19 26 26 H 1.48507 * 109.46772 * 330.00034 * 23 21 19 27 27 C 1.40718 * 119.50680 * 359.76848 * 18 17 16 28 28 C 1.37621 * 119.74708 * 0.02562 * 27 18 17 29 29 H 1.09004 * 109.47101 * 59.99647 * 1 2 3 30 30 H 1.08999 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47089 * 300.00019 * 1 2 3 32 32 H 0.96702 * 113.99821 * 179.97438 * 9 7 5 33 33 H 1.09000 * 109.51987 * 177.55575 * 10 7 5 34 34 H 1.08994 * 109.52931 * 297.74903 * 10 7 5 35 35 H 1.09003 * 109.50535 * 182.40124 * 11 10 7 36 36 H 1.09003 * 109.53641 * 62.29600 * 11 10 7 37 37 H 1.09003 * 109.46116 * 299.16271 * 12 11 10 38 38 H 1.08996 * 109.46529 * 179.19712 * 12 11 10 39 39 H 1.09002 * 109.47523 * 284.42095 * 14 13 5 40 40 H 1.09006 * 109.46927 * 44.42767 * 14 13 5 41 41 H 1.08004 * 119.87807 * 0.02562 * 16 15 14 42 42 H 1.07999 * 120.13030 * 180.23326 * 17 16 15 43 43 H 0.97003 * 120.00038 * 180.02562 * 22 21 19 44 44 H 1.08000 * 120.13094 * 179.97438 * 27 18 17 45 45 H 1.08002 * 119.87861 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9758 0.4007 -0.5057 7 6 4.0745 1.3130 1.4437 8 1 3.6543 2.1792 1.9546 9 8 3.6760 0.1197 2.1214 10 6 5.6023 1.4132 1.4391 11 6 6.0216 2.6628 0.6598 12 6 5.4571 2.5856 -0.7605 13 7 3.9927 2.4917 -0.7022 14 6 3.4071 2.5550 -2.0479 15 6 3.5402 3.9556 -2.5881 16 6 2.5312 4.8790 -2.3618 17 6 2.6442 6.1620 -2.8463 18 6 3.7847 6.5324 -3.5827 19 6 3.9098 7.8465 -4.0893 20 1 3.4139 8.6666 -3.5913 21 6 4.6761 8.0844 -5.2358 22 7 5.0814 7.0815 -5.9716 23 14 5.1204 9.8343 -5.7157 24 1 6.4082 10.2104 -5.0790 25 1 5.2532 9.9240 -7.1921 26 1 4.0528 10.7593 -5.2575 27 6 4.8001 5.5852 -3.8108 28 6 4.6678 4.3090 -3.3131 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9651 0.0756 3.0431 33 1 5.9657 1.4844 2.4642 34 1 6.0241 0.5283 0.9627 35 1 7.1095 2.7168 0.6166 36 1 5.6327 3.5508 1.1582 37 1 5.8577 1.7053 -1.2632 38 1 5.7418 3.4806 -1.3137 39 1 3.9308 1.8608 -2.7051 40 1 2.3526 2.2834 -1.9984 41 1 1.6550 4.5915 -1.7995 42 1 1.8587 6.8809 -2.6657 43 1 5.6129 7.2464 -6.7661 44 1 5.6796 5.8585 -4.3749 45 1 5.4456 3.5802 -3.4872 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444728832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:27 Heat of formation + Delta-G solvation = -109.628506 kcal Electronic energy + Delta-G solvation = -27489.853834 eV Core-core repulsion = 23665.035692 eV Total energy + Delta-G solvation = -3824.818142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.80151 -38.95357 -37.61762 -36.48598 -35.99509 -33.90461 -32.79826 -30.93367 -29.62550 -29.22066 -27.76411 -26.85752 -24.65940 -23.81127 -22.45233 -21.13866 -20.73278 -19.85113 -19.69415 -17.79670 -17.34858 -17.23231 -16.70454 -16.39106 -15.36936 -15.15321 -14.86075 -14.50250 -14.43960 -13.99641 -13.82141 -13.63893 -13.37396 -13.11203 -13.07240 -12.85952 -12.42020 -12.24862 -11.96033 -11.87985 -11.64604 -11.37202 -11.14584 -11.09072 -10.98822 -10.83323 -10.72394 -10.61267 -10.46017 -10.33471 -10.28774 -9.89104 -9.53966 -9.30508 -9.14480 -8.13833 -7.38400 -7.20768 -6.67858 -4.32485 2.30927 2.61553 2.77649 3.08845 3.12733 3.13977 3.18181 3.69923 3.96704 4.42424 4.54346 4.62044 4.75027 4.87653 4.99154 5.04484 5.09632 5.17501 5.24429 5.44619 5.48703 5.55534 5.57795 5.68478 5.76912 5.79549 5.85437 5.97976 6.19568 6.26645 6.28856 6.38838 6.44820 6.54507 6.98810 7.12193 7.15884 7.18849 7.36044 7.40866 7.45157 7.68610 7.90942 7.95404 8.11188 8.19513 8.36614 8.69413 8.95193 9.02701 10.25661 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020403 B = 0.003215 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.020300 B = 8707.365493 C = 9537.443586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.470 3.530 4 O -0.481 6.481 5 C 0.103 3.897 6 H 0.072 0.928 7 C 0.118 3.882 8 H 0.073 0.927 9 O -0.563 6.563 10 C -0.147 4.147 11 C -0.118 4.118 12 C 0.054 3.946 13 N -0.509 5.509 14 C 0.116 3.884 15 C -0.200 4.200 16 C -0.065 4.065 17 C -0.225 4.225 18 C 0.112 3.888 19 C -0.463 4.463 20 H 0.076 0.924 21 C 0.074 3.926 22 N -0.802 5.802 23 Si 0.910 3.090 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.263 1.263 27 C -0.161 4.161 28 C -0.097 4.097 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.381 0.619 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.032 0.968 38 H 0.101 0.899 39 H 0.029 0.971 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.278 0.722 44 H 0.120 0.880 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.570 -13.257 12.073 17.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.271 6.271 3 C 0.311 3.689 4 O -0.366 6.366 5 C -0.007 4.007 6 H 0.090 0.910 7 C 0.059 3.941 8 H 0.091 0.909 9 O -0.369 6.369 10 C -0.185 4.185 11 C -0.156 4.156 12 C -0.073 4.073 13 N -0.237 5.237 14 C -0.009 4.009 15 C -0.202 4.202 16 C -0.084 4.084 17 C -0.244 4.244 18 C 0.110 3.890 19 C -0.493 4.493 20 H 0.094 0.906 21 C -0.143 4.143 22 N -0.428 5.428 23 Si 0.734 3.266 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.187 1.187 27 C -0.181 4.181 28 C -0.116 4.116 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.229 0.771 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.050 0.950 38 H 0.119 0.881 39 H 0.047 0.953 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.138 0.862 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.002 -12.753 11.531 17.194 hybrid contribution 0.515 0.246 -0.277 0.634 sum 0.517 -12.507 11.255 16.834 Atomic orbital electron populations 1.23218 0.76777 1.03316 1.02473 1.86531 1.22939 1.33480 1.84148 1.23291 0.91451 0.81441 0.72761 1.90711 1.66514 1.36045 1.43297 1.21011 0.88117 0.95241 0.96298 0.91037 1.21607 0.93981 0.87798 0.90755 0.90920 1.86520 1.80274 1.41113 1.28948 1.22296 0.95112 0.99700 1.01424 1.21594 1.00465 0.97874 0.95628 1.22240 0.85780 1.02348 0.96926 1.61868 1.09268 1.32761 1.19763 1.20877 0.98285 0.96202 0.85542 1.18705 0.98625 0.94127 1.08717 1.20391 0.96946 0.93385 0.97649 1.21015 0.98844 0.95645 1.08940 1.17641 0.89478 0.93122 0.88798 1.19605 1.26664 0.94176 1.08827 0.90609 1.25884 0.93784 0.98933 0.95657 1.69803 1.28016 1.32576 1.12399 0.86293 0.79803 0.82552 0.77912 1.19391 1.20383 1.18703 1.21332 1.00130 0.92926 1.03681 1.20524 0.95995 0.96296 0.98811 0.91967 0.88365 0.92067 0.77141 0.91048 0.91083 0.90826 0.90469 0.94982 0.88108 0.95325 0.91500 0.89138 0.89137 0.91075 0.86243 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.56 101.05 1.07 1.46 16 2 O -0.35 -5.07 10.57 -39.25 -0.41 -5.49 16 3 C 0.47 7.57 5.43 36.00 0.20 7.76 16 4 O -0.48 -9.09 15.24 -18.76 -0.29 -9.37 16 5 C 0.10 1.51 2.08 -68.87 -0.14 1.36 16 6 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 7 C 0.12 1.40 3.04 -26.65 -0.08 1.32 16 8 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 9 O -0.56 -6.00 12.97 -35.23 -0.46 -6.46 16 10 C -0.15 -1.44 5.63 -26.61 -0.15 -1.59 16 11 C -0.12 -1.35 6.09 -26.65 -0.16 -1.51 16 12 C 0.05 0.78 5.23 -3.83 -0.02 0.76 16 13 N -0.51 -8.40 4.21 -229.50 -0.97 -9.37 16 14 C 0.12 2.18 4.76 -4.98 -0.02 2.15 16 15 C -0.20 -4.43 5.06 -104.33 -0.53 -4.95 16 16 C -0.06 -1.54 9.67 -39.66 -0.38 -1.92 16 17 C -0.22 -5.72 9.80 -38.87 -0.38 -6.10 16 18 C 0.11 3.02 5.56 -106.82 -0.59 2.43 16 19 C -0.46 -12.45 9.07 -37.74 -0.34 -12.80 16 20 H 0.08 1.98 7.87 -52.49 -0.41 1.56 16 21 C 0.07 1.87 5.24 -17.34 -0.09 1.78 16 22 N -0.80 -20.87 10.80 55.55 0.60 -20.27 16 23 Si 0.91 18.93 29.58 -169.99 -5.03 13.90 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 26 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 27 C -0.16 -4.17 8.67 -38.87 -0.34 -4.51 16 28 C -0.10 -2.23 8.04 -39.66 -0.32 -2.55 16 29 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 30 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 32 H 0.38 2.24 9.08 45.56 0.41 2.65 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.10 1.67 5.87 -51.93 -0.30 1.37 16 39 H 0.03 0.50 8.00 -51.93 -0.42 0.09 16 40 H 0.07 1.30 5.68 -51.93 -0.29 1.00 16 41 H 0.09 2.08 8.06 -52.48 -0.42 1.65 16 42 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 43 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 44 H 0.12 3.19 6.14 -52.49 -0.32 2.87 16 45 H 0.08 1.70 7.84 -52.49 -0.41 1.29 16 LS Contribution 364.93 15.07 5.50 5.50 Total: -1.00 -30.88 364.93 -9.30 -40.18 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.96 Total: 8.27 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -2.29 Total: -16.89 kcal Atomic # 7 Polarization: -29.28 SS G_CDS: -0.37 Total: -29.64 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -1.16 Total: -21.32 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.88 -9.30 -40.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444728832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.445 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds