Wall clock time and date at job start Tue Mar 31 2020 12:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 117.00088 * 2 1 4 4 O 1.20833 * 119.99918 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00091 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.45384 * 29.53165 * 5 3 2 7 7 C 1.53043 * 109.46721 * 269.55701 * 5 3 2 8 8 H 1.08992 * 109.49995 * 300.74887 * 7 5 3 9 9 O 1.42899 * 109.49909 * 60.82549 * 7 5 3 10 10 C 1.53113 * 109.27668 * 180.80158 * 7 5 3 11 11 C 1.53121 * 109.16253 * 57.66016 * 10 7 5 12 12 C 1.53038 * 109.27649 * 302.34098 * 11 10 7 13 13 N 1.46850 * 109.46130 * 149.50329 * 5 3 2 14 14 C 1.46898 * 110.99976 * 305.85423 * 13 5 3 15 15 C 1.50702 * 109.46859 * 164.42038 * 14 13 5 16 16 C 1.38634 * 119.74977 * 269.72685 * 15 14 13 17 17 C 1.37614 * 120.24757 * 179.76676 * 16 15 14 18 18 C 1.40718 * 119.74814 * 0.48605 * 17 16 15 19 19 C 1.41391 * 120.24974 * 179.78771 * 18 17 16 20 20 H 1.08002 * 119.99742 * 27.20023 * 19 18 17 21 21 C 1.39943 * 120.00098 * 207.19415 * 19 18 17 22 22 N 1.30824 * 120.00200 * 11.97854 * 21 19 18 23 23 Si 1.86804 * 119.99916 * 191.97639 * 21 19 18 24 24 H 1.48500 * 109.47270 * 90.00288 * 23 21 19 25 25 H 1.48504 * 109.46907 * 210.00303 * 23 21 19 26 26 H 1.48507 * 109.46772 * 330.00034 * 23 21 19 27 27 C 1.40718 * 119.50680 * 359.76848 * 18 17 16 28 28 C 1.37621 * 119.74708 * 0.02562 * 27 18 17 29 29 H 1.09004 * 109.47101 * 59.99647 * 1 2 3 30 30 H 1.08999 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47089 * 300.00019 * 1 2 3 32 32 H 0.96702 * 113.99821 * 179.97438 * 9 7 5 33 33 H 1.09000 * 109.51987 * 177.55575 * 10 7 5 34 34 H 1.08994 * 109.52931 * 297.74903 * 10 7 5 35 35 H 1.09003 * 109.50535 * 182.40124 * 11 10 7 36 36 H 1.09003 * 109.53641 * 62.29600 * 11 10 7 37 37 H 1.09003 * 109.46116 * 299.16271 * 12 11 10 38 38 H 1.08996 * 109.46529 * 179.19712 * 12 11 10 39 39 H 1.09002 * 109.47523 * 284.42095 * 14 13 5 40 40 H 1.09006 * 109.46927 * 44.42767 * 14 13 5 41 41 H 1.08004 * 119.87807 * 0.02562 * 16 15 14 42 42 H 1.07999 * 120.13030 * 180.23326 * 17 16 15 43 43 H 0.97003 * 120.00038 * 180.02562 * 22 21 19 44 44 H 1.08000 * 120.13094 * 179.97438 * 27 18 17 45 45 H 1.08002 * 119.87861 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9758 0.4007 -0.5057 7 6 4.0745 1.3130 1.4437 8 1 3.6543 2.1792 1.9546 9 8 3.6760 0.1197 2.1214 10 6 5.6023 1.4132 1.4391 11 6 6.0216 2.6628 0.6598 12 6 5.4571 2.5856 -0.7605 13 7 3.9927 2.4917 -0.7022 14 6 3.4071 2.5550 -2.0479 15 6 3.5402 3.9556 -2.5881 16 6 2.5312 4.8790 -2.3618 17 6 2.6442 6.1620 -2.8463 18 6 3.7847 6.5324 -3.5827 19 6 3.9098 7.8465 -4.0893 20 1 3.4139 8.6666 -3.5913 21 6 4.6761 8.0844 -5.2358 22 7 5.0814 7.0815 -5.9716 23 14 5.1204 9.8343 -5.7157 24 1 6.4082 10.2104 -5.0790 25 1 5.2532 9.9240 -7.1921 26 1 4.0528 10.7593 -5.2575 27 6 4.8001 5.5852 -3.8108 28 6 4.6678 4.3090 -3.3131 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9651 0.0756 3.0431 33 1 5.9657 1.4844 2.4642 34 1 6.0241 0.5283 0.9627 35 1 7.1095 2.7168 0.6166 36 1 5.6327 3.5508 1.1582 37 1 5.8577 1.7053 -1.2632 38 1 5.7418 3.4806 -1.3137 39 1 3.9308 1.8608 -2.7051 40 1 2.3526 2.2834 -1.9984 41 1 1.6550 4.5915 -1.7995 42 1 1.8587 6.8809 -2.6657 43 1 5.6129 7.2464 -6.7661 44 1 5.6796 5.8585 -4.3749 45 1 5.4456 3.5802 -3.4872 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444728832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:26 Heat of formation + Delta-G solvation = -129.846972 kcal Electronic energy + Delta-G solvation = -27490.730573 eV Core-core repulsion = 23665.035692 eV Total energy + Delta-G solvation = -3825.694880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.98521 -40.15299 -39.27457 -37.64543 -37.17652 -35.64342 -34.05226 -32.33475 -31.14859 -31.06782 -28.74872 -28.42150 -26.12527 -24.97551 -23.85202 -22.79790 -22.05169 -21.56670 -20.82002 -19.20813 -18.88674 -18.32222 -17.82506 -17.58545 -17.13783 -16.50024 -16.03990 -15.88524 -15.63558 -15.45603 -15.15915 -14.99966 -14.79644 -14.29518 -14.21758 -14.12304 -13.86959 -13.75083 -13.42921 -13.30587 -12.94044 -12.90201 -12.77251 -12.60219 -12.37601 -12.12015 -12.02755 -11.89675 -11.77420 -11.71963 -11.39891 -11.35915 -11.18647 -11.03968 -10.83546 -9.45107 -9.28982 -9.14607 -8.58239 -6.34249 0.91325 1.10139 1.16687 1.38570 1.49092 1.51811 1.60544 2.22427 2.51543 2.85098 3.42451 3.62444 3.66033 3.78584 3.88217 4.01972 4.06058 4.11348 4.20879 4.28526 4.29330 4.36866 4.50728 4.59357 4.60411 4.61951 4.65241 4.67954 4.85170 4.88560 5.02921 5.05759 5.15403 5.17931 5.30740 5.36983 5.39753 5.49208 5.72390 5.84230 5.97030 6.04030 6.12092 6.28231 6.41455 6.71066 6.72499 6.84477 6.96583 7.04729 8.37700 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020403 B = 0.003215 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.020300 B = 8707.365493 C = 9537.443586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.469 3.531 4 O -0.519 6.519 5 C 0.101 3.899 6 H 0.083 0.917 7 C 0.125 3.875 8 H 0.058 0.942 9 O -0.571 6.571 10 C -0.136 4.136 11 C -0.114 4.114 12 C 0.051 3.949 13 N -0.523 5.523 14 C 0.124 3.876 15 C -0.186 4.186 16 C -0.073 4.073 17 C -0.242 4.242 18 C 0.082 3.918 19 C -0.502 4.502 20 H 0.070 0.930 21 C 0.034 3.966 22 N -0.831 5.831 23 Si 0.984 3.016 24 H -0.260 1.260 25 H -0.267 1.267 26 H -0.262 1.262 27 C -0.180 4.180 28 C -0.090 4.090 29 H 0.055 0.945 30 H 0.135 0.865 31 H 0.060 0.940 32 H 0.403 0.597 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.058 0.942 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.287 0.713 44 H 0.106 0.894 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.844 -14.970 13.120 19.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.311 3.689 4 O -0.406 6.406 5 C -0.009 4.009 6 H 0.101 0.899 7 C 0.066 3.934 8 H 0.076 0.924 9 O -0.380 6.380 10 C -0.174 4.174 11 C -0.152 4.152 12 C -0.076 4.076 13 N -0.251 5.251 14 C -0.002 4.002 15 C -0.188 4.188 16 C -0.091 4.091 17 C -0.262 4.262 18 C 0.079 3.921 19 C -0.532 4.532 20 H 0.088 0.912 21 C -0.180 4.180 22 N -0.458 5.458 23 Si 0.805 3.195 24 H -0.185 1.185 25 H -0.192 1.192 26 H -0.186 1.186 27 C -0.200 4.200 28 C -0.109 4.109 29 H 0.074 0.926 30 H 0.153 0.847 31 H 0.079 0.921 32 H 0.254 0.746 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.124 0.876 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.281 -14.507 12.613 19.266 hybrid contribution 0.029 0.584 -0.513 0.778 sum 1.309 -13.923 12.100 18.492 Atomic orbital electron populations 1.23524 0.75023 1.05666 1.02205 1.86520 1.24717 1.32483 1.83551 1.23678 0.92156 0.81365 0.71658 1.90694 1.67420 1.37274 1.45261 1.21146 0.87252 0.94436 0.98061 0.89898 1.21443 0.95319 0.87763 0.88908 0.92417 1.86470 1.80640 1.40148 1.30761 1.22240 0.93165 0.98942 1.03011 1.21580 1.01583 0.98337 0.93674 1.22307 0.84544 1.01764 0.98980 1.61666 1.10599 1.34589 1.18261 1.20694 0.98374 0.93886 0.87295 1.19062 0.97276 0.95563 1.06901 1.20534 0.97713 0.93160 0.97719 1.21144 0.98825 0.96567 1.09668 1.17953 0.90331 0.93936 0.89830 1.19821 1.28797 0.94240 1.10330 0.91157 1.26716 0.92958 1.03402 0.94884 1.69852 1.28313 1.34721 1.12877 0.85175 0.79529 0.76801 0.77980 1.18492 1.19173 1.18602 1.21315 0.99725 0.94173 1.04752 1.20732 0.96744 0.95709 0.97710 0.92587 0.84705 0.92071 0.74584 0.88075 0.90034 0.88584 0.91901 0.93327 0.90735 0.93833 0.92392 0.88696 0.89245 0.90254 0.87571 0.87198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.79 16 2 O -0.36 -9.68 10.57 -51.39 -0.54 -10.23 16 3 C 0.47 14.71 5.43 71.23 0.39 15.10 16 4 O -0.52 -19.72 15.24 21.94 0.33 -19.39 16 5 C 0.10 2.76 2.08 44.19 0.09 2.85 16 6 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 7 C 0.13 2.68 3.04 30.65 0.09 2.77 16 8 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 9 O -0.57 -10.45 12.97 -148.98 -1.93 -12.38 16 10 C -0.14 -2.15 5.63 30.67 0.17 -1.97 16 11 C -0.11 -2.32 6.09 30.65 0.19 -2.13 16 12 C 0.05 1.37 5.23 86.32 0.45 1.82 16 13 N -0.52 -16.71 4.21 -880.01 -3.70 -20.42 16 14 C 0.12 4.54 4.76 85.56 0.41 4.95 16 15 C -0.19 -8.30 5.06 -19.67 -0.10 -8.40 16 16 C -0.07 -3.54 9.67 22.22 0.21 -3.32 16 17 C -0.24 -12.90 9.80 22.73 0.22 -12.68 16 18 C 0.08 4.60 5.56 -21.29 -0.12 4.49 16 19 C -0.50 -28.15 9.07 23.46 0.21 -27.93 16 20 H 0.07 3.85 7.87 -2.91 -0.02 3.83 16 21 C 0.03 1.76 5.24 85.26 0.45 2.21 16 22 N -0.83 -44.16 10.80 21.83 0.24 -43.92 16 23 Si 0.98 39.21 29.58 68.60 2.03 41.24 16 24 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 25 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 26 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 27 C -0.18 -9.60 8.67 22.73 0.20 -9.41 16 28 C -0.09 -4.15 8.04 22.22 0.18 -3.98 16 29 H 0.06 1.21 8.13 -2.38 -0.02 1.19 16 30 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 32 H 0.40 3.32 9.08 -74.06 -0.67 2.65 16 33 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 2.41 5.87 -2.39 -0.01 2.40 16 39 H 0.04 1.46 8.00 -2.39 -0.02 1.44 16 40 H 0.06 2.23 5.68 -2.38 -0.01 2.22 16 41 H 0.09 4.49 8.06 -2.91 -0.02 4.46 16 42 H 0.09 4.61 8.06 -2.91 -0.02 4.58 16 43 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 44 H 0.11 5.88 6.14 -2.91 -0.02 5.86 16 45 H 0.11 4.40 7.84 -2.91 -0.02 4.38 16 Total: -1.00 -69.41 364.93 0.99 -68.42 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: 0.33 Total: 30.51 kcal Atomic # 6 Polarization: -38.08 SS G_CDS: 4.24 Total: -33.84 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -3.47 Total: -64.34 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -2.14 Total: -41.99 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Total: -69.41 0.99 -68.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444728832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.429 kcal (2) G-P(sol) polarization free energy of solvation -69.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds