Wall clock time and date at job start Tue Mar 31 2020 12:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00315 * 2 1 4 4 H 1.08994 * 109.51988 * 329.99937 * 3 2 1 5 5 C 1.53089 * 109.57361 * 90.15573 * 3 2 1 6 6 O 1.42911 * 109.41193 * 177.54755 * 5 3 2 7 7 C 1.42898 * 114.09438 * 298.83749 * 6 5 3 8 8 C 1.53091 * 109.41557 * 61.16111 * 7 6 5 9 9 C 1.53178 * 109.16451 * 302.38867 * 8 7 6 10 10 H 1.09000 * 109.61684 * 297.06722 * 9 8 7 11 11 C 1.53005 * 109.54504 * 176.84382 * 9 8 7 12 12 N 1.46501 * 109.46964 * 65.44479 * 11 9 8 13 13 C 1.34769 * 119.99936 * 179.97438 * 12 11 9 14 14 O 1.21589 * 120.00137 * 359.97438 * 13 12 11 15 15 C 1.47643 * 119.99841 * 179.97438 * 13 12 11 16 16 C 1.40013 * 119.89999 * 359.72992 * 15 13 12 17 17 C 1.36313 * 120.11018 * 179.72118 * 16 15 13 18 18 C 1.40889 * 119.89217 * 0.54773 * 17 16 15 19 19 C 1.41100 * 120.10458 * 179.74752 * 18 17 16 20 20 H 1.07998 * 120.00013 * 330.12648 * 19 18 17 21 21 C 1.40232 * 120.00169 * 150.13179 * 19 18 17 22 22 N 1.30647 * 120.00014 * 161.74641 * 21 19 18 23 23 Si 1.86800 * 119.99795 * 341.74181 * 21 19 18 24 24 H 1.48504 * 109.46757 * 95.41616 * 23 21 19 25 25 H 1.48501 * 109.47298 * 215.41113 * 23 21 19 26 26 H 1.48495 * 109.47181 * 335.41683 * 23 21 19 27 27 C 1.40894 * 119.78987 * 359.72258 * 18 17 16 28 28 C 1.36311 * 119.89185 * 359.97438 * 27 18 17 29 29 H 1.09004 * 109.46939 * 59.99900 * 1 2 3 30 30 H 1.08994 * 109.47447 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47233 * 300.00413 * 1 2 3 32 32 H 1.09000 * 109.48081 * 297.52852 * 5 3 2 33 33 H 1.09003 * 109.48232 * 57.56367 * 5 3 2 34 34 H 1.09000 * 109.48682 * 301.17759 * 7 6 5 35 35 H 1.09005 * 109.47884 * 181.14264 * 7 6 5 36 36 H 1.09004 * 109.52770 * 182.47844 * 8 7 6 37 37 H 1.09006 * 109.57313 * 62.32536 * 8 7 6 38 38 H 1.09003 * 109.47018 * 185.44164 * 11 9 8 39 39 H 1.09001 * 109.47016 * 305.44697 * 11 9 8 40 40 H 0.97009 * 119.99849 * 359.97438 * 12 11 9 41 41 H 1.08010 * 119.94143 * 359.97438 * 16 15 13 42 42 H 1.08001 * 120.05418 * 180.27455 * 17 16 15 43 43 H 0.97000 * 119.99918 * 179.97438 * 22 21 19 44 44 H 1.08003 * 120.04728 * 180.02562 * 27 18 17 45 45 H 1.08003 * 119.94815 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3457 2.0000 -0.5137 5 6 2.2225 1.7724 1.4424 6 8 2.8560 3.0534 1.4386 7 6 4.1447 3.0650 0.8212 8 6 4.0097 2.6500 -0.6461 9 6 3.3621 1.2637 -0.7191 10 1 4.0095 0.5315 -0.2364 11 6 3.1511 0.8738 -2.1835 12 7 4.4517 0.7179 -2.8396 13 6 4.5128 0.3741 -4.1413 14 8 3.4886 0.1928 -4.7710 15 6 5.8235 0.2176 -4.8026 16 6 7.0015 0.4324 -4.0770 17 6 8.2140 0.2836 -4.6818 18 6 8.2805 -0.0758 -6.0425 19 6 9.5331 -0.2258 -6.6744 20 1 10.3795 0.3561 -6.3407 21 6 9.6791 -1.1306 -7.7359 22 7 10.6987 -1.0278 -8.5462 23 14 8.4158 -2.4827 -7.9910 24 1 7.4085 -2.0374 -8.9872 25 1 9.0943 -3.7071 -8.4866 26 1 7.7401 -2.7784 -6.7021 27 6 7.0923 -0.2853 -6.7700 28 6 5.8846 -0.1402 -6.1549 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.2588 1.8449 1.9465 33 1 2.8544 1.0558 1.9672 34 1 4.8018 2.3654 1.3379 35 1 4.5658 4.0689 0.8778 36 1 4.9968 2.6156 -1.1073 37 1 3.3861 3.3716 -1.1739 38 1 2.6038 -0.0676 -2.2335 39 1 2.5805 1.6532 -2.6884 40 1 5.2688 0.8622 -2.3371 41 1 6.9494 0.7125 -3.0351 42 1 9.1221 0.4452 -4.1201 43 1 10.7999 -1.6539 -9.2802 44 1 7.1385 -0.5613 -7.8132 45 1 4.9732 -0.3010 -6.7117 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452647863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:22 Heat of formation + Delta-G solvation = -121.419922 kcal Electronic energy + Delta-G solvation = -26434.202254 eV Core-core repulsion = 22608.872798 eV Total energy + Delta-G solvation = -3825.329456 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.32963 -39.12115 -37.60333 -37.37918 -35.41993 -33.86867 -32.69662 -30.83002 -30.67877 -29.93537 -27.67714 -26.93169 -25.65479 -23.49829 -23.05905 -21.98688 -21.03189 -20.63095 -19.73692 -17.66235 -17.49833 -17.07766 -16.77003 -15.97543 -15.89314 -15.61992 -15.32206 -14.95979 -14.84080 -14.23944 -14.08108 -13.79784 -13.64892 -13.50209 -13.35410 -12.83734 -12.73492 -12.59907 -12.46043 -12.34655 -12.03106 -11.85025 -11.67011 -11.29318 -11.11158 -10.97362 -10.87651 -10.75143 -10.45277 -10.39892 -10.23551 -9.72442 -9.56287 -9.35323 -9.08920 -8.69589 -7.95790 -7.75871 -7.22551 -4.73960 2.00755 2.65093 2.99776 3.11144 3.17434 3.20362 3.56786 3.68384 3.74317 3.83685 4.34423 4.37765 4.44810 4.49127 4.66521 4.79560 4.95123 4.98420 5.06520 5.15448 5.23823 5.28826 5.32713 5.35951 5.40213 5.52573 5.61422 5.69621 5.75370 5.81111 5.96485 6.04021 6.07998 6.40013 6.62907 6.64875 6.67356 6.83889 6.94098 6.94158 7.25201 7.38108 7.48386 7.69168 7.89042 8.08217 8.10592 8.43134 8.54184 8.93979 9.76942 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024210 B = 0.002612 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.246600 B =10717.432330 C =11494.759609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.064 3.936 4 H 0.073 0.927 5 C 0.043 3.957 6 O -0.378 6.378 7 C 0.057 3.943 8 C -0.151 4.151 9 C -0.099 4.099 10 H 0.087 0.913 11 C 0.133 3.867 12 N -0.740 5.740 13 C 0.572 3.428 14 O -0.571 6.571 15 C -0.285 4.285 16 C -0.044 4.044 17 C -0.218 4.218 18 C 0.106 3.894 19 C -0.425 4.425 20 H 0.096 0.904 21 C 0.083 3.917 22 N -0.786 5.786 23 Si 0.915 3.085 24 H -0.266 1.266 25 H -0.288 1.288 26 H -0.241 1.241 27 C -0.252 4.252 28 C -0.008 4.008 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.395 0.605 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.291 0.709 44 H 0.104 0.896 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.741 4.057 16.849 21.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.295 6.295 3 C 0.006 3.994 4 H 0.091 0.909 5 C -0.035 4.035 6 O -0.297 6.297 7 C -0.020 4.020 8 C -0.189 4.189 9 C -0.118 4.118 10 H 0.106 0.894 11 C 0.009 3.991 12 N -0.394 5.394 13 C 0.366 3.634 14 O -0.453 6.453 15 C -0.290 4.290 16 C -0.063 4.063 17 C -0.237 4.237 18 C 0.103 3.897 19 C -0.451 4.451 20 H 0.114 0.886 21 C -0.140 4.140 22 N -0.408 5.408 23 Si 0.740 3.260 24 H -0.191 1.191 25 H -0.215 1.215 26 H -0.164 1.164 27 C -0.271 4.271 28 C -0.028 4.028 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.231 0.769 41 H 0.112 0.888 42 H 0.123 0.877 43 H 0.102 0.898 44 H 0.122 0.878 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.238 3.875 16.272 21.332 hybrid contribution -0.034 -0.531 -0.162 0.556 sum -13.273 3.344 16.109 21.139 Atomic orbital electron populations 1.22848 0.80761 1.03064 1.00099 1.87947 1.19905 1.26670 1.94937 1.22713 0.95002 0.85500 0.96228 0.90892 1.23021 0.98672 0.85743 0.96016 1.87956 1.32432 1.29934 1.79339 1.22683 0.84721 1.02608 0.91940 1.22319 1.02589 0.96181 0.97773 1.21548 0.96057 0.98024 0.96199 0.89420 1.21133 0.86305 1.01702 0.89947 1.45874 1.08195 1.73631 1.11682 1.18495 0.89685 0.74757 0.80472 1.90652 1.36845 1.53057 1.64740 1.18908 0.90776 1.23358 0.95927 1.20432 0.92594 0.96366 0.96890 1.20685 0.96006 1.12295 0.94731 1.17853 0.92736 0.87957 0.91178 1.19749 0.96499 1.18578 1.10297 0.88593 1.26367 0.96058 0.98867 0.92710 1.69604 1.27795 1.32764 1.10613 0.86232 0.79806 0.78536 0.81380 1.19132 1.21490 1.16355 1.20748 0.92603 1.14565 0.99214 1.20412 0.96868 0.92678 0.92813 0.93643 0.89361 0.94058 0.88785 0.92121 0.92706 0.88301 0.89667 0.90397 0.91062 0.92209 0.76943 0.88831 0.87747 0.89795 0.87807 0.87637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.82 101.05 1.09 1.31 16 2 O -0.38 -3.90 9.74 -35.23 -0.34 -4.24 16 3 C 0.06 0.60 2.21 -26.59 -0.06 0.55 16 4 H 0.07 0.67 7.79 -51.93 -0.40 0.27 16 5 C 0.04 0.36 6.47 37.20 0.24 0.60 16 6 O -0.38 -3.65 10.77 -35.23 -0.38 -4.02 16 7 C 0.06 0.45 6.84 37.20 0.25 0.71 16 8 C -0.15 -1.32 5.26 -26.59 -0.14 -1.46 16 9 C -0.10 -1.00 2.03 -90.43 -0.18 -1.18 16 10 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 11 C 0.13 1.78 5.01 -4.04 -0.02 1.76 16 12 N -0.74 -11.33 5.27 -61.31 -0.32 -11.65 16 13 C 0.57 11.52 7.76 -12.42 -0.10 11.42 16 14 O -0.57 -13.23 16.32 5.29 0.09 -13.15 16 15 C -0.29 -6.10 5.89 -104.73 -0.62 -6.72 16 16 C -0.04 -0.86 9.47 -39.61 -0.38 -1.23 16 17 C -0.22 -4.71 9.73 -39.27 -0.38 -5.09 16 18 C 0.11 2.57 5.11 -106.80 -0.55 2.03 16 19 C -0.42 -10.76 9.56 -37.75 -0.36 -11.13 16 20 H 0.10 2.51 8.06 -52.49 -0.42 2.08 16 21 C 0.08 2.04 5.40 -17.31 -0.09 1.95 16 22 N -0.79 -19.61 13.92 55.56 0.77 -18.84 16 23 Si 0.92 20.03 24.52 -169.99 -4.17 15.86 16 24 H -0.27 -5.71 6.71 56.52 0.38 -5.33 16 25 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.24 -5.48 6.87 56.52 0.39 -5.09 16 27 C -0.25 -6.01 7.11 -39.27 -0.28 -6.29 16 28 C -0.01 -0.19 9.52 -39.61 -0.38 -0.57 16 29 H 0.04 0.33 8.09 -51.93 -0.42 -0.09 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.24 7.95 -51.92 -0.41 -0.17 16 32 H 0.09 0.68 7.95 -51.93 -0.41 0.26 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.71 7.31 -51.93 -0.38 0.33 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.07 7.65 -51.93 -0.40 0.68 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.40 5.14 5.71 -40.82 -0.23 4.90 16 41 H 0.09 1.45 6.37 -52.48 -0.33 1.12 16 42 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 43 H 0.29 6.54 8.29 -40.82 -0.34 6.20 16 44 H 0.10 2.45 4.72 -52.48 -0.25 2.20 16 45 H 0.11 2.36 7.63 -52.48 -0.40 1.96 16 LS Contribution 361.99 15.07 5.46 5.46 Total: -1.00 -29.50 361.99 -7.46 -36.96 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.62 Total: 6.98 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -1.94 Total: -13.35 kcal Atomic # 7 Polarization: -30.94 SS G_CDS: 0.45 Total: -30.49 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.64 Total: -21.42 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.17 Total: 15.86 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.50 -7.46 -36.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452647863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.460 kcal (2) G-P(sol) polarization free energy of solvation -29.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds