Wall clock time and date at job start Tue Mar 31 2020 12:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00315 * 2 1 4 4 H 1.08994 * 109.51988 * 329.99937 * 3 2 1 5 5 C 1.53089 * 109.57361 * 90.15573 * 3 2 1 6 6 O 1.42911 * 109.41193 * 177.54755 * 5 3 2 7 7 C 1.42898 * 114.09438 * 298.83749 * 6 5 3 8 8 C 1.53091 * 109.41557 * 61.16111 * 7 6 5 9 9 C 1.53178 * 109.16451 * 302.38867 * 8 7 6 10 10 H 1.09000 * 109.61684 * 297.06722 * 9 8 7 11 11 C 1.53005 * 109.54504 * 176.84382 * 9 8 7 12 12 N 1.46501 * 109.46964 * 65.44479 * 11 9 8 13 13 C 1.34769 * 119.99936 * 179.97438 * 12 11 9 14 14 O 1.21589 * 120.00137 * 359.97438 * 13 12 11 15 15 C 1.47643 * 119.99841 * 179.97438 * 13 12 11 16 16 C 1.40013 * 119.89999 * 359.72992 * 15 13 12 17 17 C 1.36313 * 120.11018 * 179.72118 * 16 15 13 18 18 C 1.40889 * 119.89217 * 0.54773 * 17 16 15 19 19 C 1.41100 * 120.10458 * 179.74752 * 18 17 16 20 20 H 1.07998 * 120.00013 * 330.12648 * 19 18 17 21 21 C 1.40232 * 120.00169 * 150.13179 * 19 18 17 22 22 N 1.30647 * 120.00014 * 161.74641 * 21 19 18 23 23 Si 1.86800 * 119.99795 * 341.74181 * 21 19 18 24 24 H 1.48504 * 109.46757 * 95.41616 * 23 21 19 25 25 H 1.48501 * 109.47298 * 215.41113 * 23 21 19 26 26 H 1.48495 * 109.47181 * 335.41683 * 23 21 19 27 27 C 1.40894 * 119.78987 * 359.72258 * 18 17 16 28 28 C 1.36311 * 119.89185 * 359.97438 * 27 18 17 29 29 H 1.09004 * 109.46939 * 59.99900 * 1 2 3 30 30 H 1.08994 * 109.47447 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47233 * 300.00413 * 1 2 3 32 32 H 1.09000 * 109.48081 * 297.52852 * 5 3 2 33 33 H 1.09003 * 109.48232 * 57.56367 * 5 3 2 34 34 H 1.09000 * 109.48682 * 301.17759 * 7 6 5 35 35 H 1.09005 * 109.47884 * 181.14264 * 7 6 5 36 36 H 1.09004 * 109.52770 * 182.47844 * 8 7 6 37 37 H 1.09006 * 109.57313 * 62.32536 * 8 7 6 38 38 H 1.09003 * 109.47018 * 185.44164 * 11 9 8 39 39 H 1.09001 * 109.47016 * 305.44697 * 11 9 8 40 40 H 0.97009 * 119.99849 * 359.97438 * 12 11 9 41 41 H 1.08010 * 119.94143 * 359.97438 * 16 15 13 42 42 H 1.08001 * 120.05418 * 180.27455 * 17 16 15 43 43 H 0.97000 * 119.99918 * 179.97438 * 22 21 19 44 44 H 1.08003 * 120.04728 * 180.02562 * 27 18 17 45 45 H 1.08003 * 119.94815 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3457 2.0000 -0.5137 5 6 2.2225 1.7724 1.4424 6 8 2.8560 3.0534 1.4386 7 6 4.1447 3.0650 0.8212 8 6 4.0097 2.6500 -0.6461 9 6 3.3621 1.2637 -0.7191 10 1 4.0095 0.5315 -0.2364 11 6 3.1511 0.8738 -2.1835 12 7 4.4517 0.7179 -2.8396 13 6 4.5128 0.3741 -4.1413 14 8 3.4886 0.1928 -4.7710 15 6 5.8235 0.2176 -4.8026 16 6 7.0015 0.4324 -4.0770 17 6 8.2140 0.2836 -4.6818 18 6 8.2805 -0.0758 -6.0425 19 6 9.5331 -0.2258 -6.6744 20 1 10.3795 0.3561 -6.3407 21 6 9.6791 -1.1306 -7.7359 22 7 10.6987 -1.0278 -8.5462 23 14 8.4158 -2.4827 -7.9910 24 1 7.4085 -2.0374 -8.9872 25 1 9.0943 -3.7071 -8.4866 26 1 7.7401 -2.7784 -6.7021 27 6 7.0923 -0.2853 -6.7700 28 6 5.8846 -0.1402 -6.1549 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.2588 1.8449 1.9465 33 1 2.8544 1.0558 1.9672 34 1 4.8018 2.3654 1.3379 35 1 4.5658 4.0689 0.8778 36 1 4.9968 2.6156 -1.1073 37 1 3.3861 3.3716 -1.1739 38 1 2.6038 -0.0676 -2.2335 39 1 2.5805 1.6532 -2.6884 40 1 5.2688 0.8622 -2.3371 41 1 6.9494 0.7125 -3.0351 42 1 9.1221 0.4452 -4.1201 43 1 10.7999 -1.6539 -9.2802 44 1 7.1385 -0.5613 -7.8132 45 1 4.9732 -0.3010 -6.7117 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452647863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:22 Heat of formation + Delta-G solvation = -141.107980 kcal Electronic energy + Delta-G solvation = -26435.055992 eV Core-core repulsion = 22608.872798 eV Total energy + Delta-G solvation = -3826.183194 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.24523 -40.55179 -39.07456 -38.28273 -36.58655 -35.68422 -33.88590 -32.44558 -31.67929 -31.40834 -28.87024 -27.53780 -27.20614 -24.22959 -24.12869 -23.62472 -22.64941 -21.57277 -21.16496 -19.48102 -18.89056 -17.89576 -17.54248 -17.22214 -17.04053 -16.62791 -16.45483 -16.06249 -15.91517 -15.72244 -15.39189 -15.27264 -15.00479 -14.58437 -14.39228 -14.22618 -14.17468 -13.99030 -13.74314 -13.55145 -13.42779 -12.80511 -12.72007 -12.63127 -12.31575 -12.23864 -12.10610 -11.99432 -11.80420 -11.55115 -11.45798 -11.12643 -11.04843 -10.80335 -10.22839 -10.09990 -9.70834 -9.53798 -9.06323 -6.63035 0.25527 0.88844 1.23567 1.34117 1.44327 1.97034 2.06750 2.29162 2.53677 2.67782 3.07768 3.47862 3.51811 3.64085 3.74290 3.97443 4.10336 4.14545 4.18390 4.26840 4.29331 4.36151 4.44807 4.48161 4.55239 4.63960 4.69678 4.72036 4.78108 4.82392 4.85831 4.88407 4.93044 4.99122 5.05301 5.15661 5.20572 5.47236 5.50833 5.64238 5.73116 5.85149 5.99480 6.08977 6.26143 6.29872 6.58434 6.65625 6.72360 7.38748 7.99173 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024210 B = 0.002612 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.246600 B =10717.432330 C =11494.759609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.397 6.397 3 C 0.065 3.935 4 H 0.072 0.928 5 C 0.046 3.954 6 O -0.393 6.393 7 C 0.056 3.944 8 C -0.148 4.148 9 C -0.092 4.092 10 H 0.093 0.907 11 C 0.136 3.864 12 N -0.718 5.718 13 C 0.571 3.429 14 O -0.604 6.604 15 C -0.282 4.282 16 C -0.030 4.030 17 C -0.224 4.224 18 C 0.093 3.907 19 C -0.459 4.459 20 H 0.075 0.925 21 C 0.056 3.944 22 N -0.820 5.820 23 Si 0.958 3.042 24 H -0.263 1.263 25 H -0.271 1.271 26 H -0.255 1.255 27 C -0.264 4.264 28 C -0.024 4.024 29 H 0.043 0.957 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.410 0.590 41 H 0.144 0.856 42 H 0.122 0.878 43 H 0.300 0.700 44 H 0.099 0.901 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.886 4.407 19.450 24.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.316 6.316 3 C 0.006 3.994 4 H 0.090 0.910 5 C -0.031 4.031 6 O -0.312 6.312 7 C -0.021 4.021 8 C -0.185 4.185 9 C -0.110 4.110 10 H 0.111 0.889 11 C 0.013 3.987 12 N -0.371 5.371 13 C 0.363 3.637 14 O -0.488 6.488 15 C -0.286 4.286 16 C -0.049 4.049 17 C -0.243 4.243 18 C 0.090 3.910 19 C -0.486 4.486 20 H 0.093 0.907 21 C -0.164 4.164 22 N -0.444 5.444 23 Si 0.782 3.218 24 H -0.188 1.188 25 H -0.197 1.197 26 H -0.179 1.179 27 C -0.283 4.283 28 C -0.043 4.043 29 H 0.062 0.938 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.124 0.876 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.130 0.870 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.248 0.752 41 H 0.161 0.839 42 H 0.140 0.860 43 H 0.111 0.889 44 H 0.117 0.883 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.367 4.237 18.909 24.123 hybrid contribution 0.128 -0.555 -0.802 0.984 sum -14.239 3.682 18.107 23.327 Atomic orbital electron populations 1.23005 0.79518 1.03893 1.00913 1.87912 1.21384 1.27217 1.95099 1.22720 0.94481 0.85280 0.96878 0.91027 1.23037 0.99388 0.85433 0.95256 1.87946 1.33216 1.30502 1.79497 1.22800 0.84341 1.03786 0.91125 1.22310 1.02635 0.94980 0.98619 1.21508 0.96946 0.98991 0.93604 0.88884 1.21192 0.84871 1.00738 0.91930 1.45683 1.09872 1.71418 1.10098 1.18371 0.88590 0.74882 0.81820 1.90645 1.37667 1.54585 1.65943 1.19266 0.92323 1.21448 0.95560 1.20807 0.90850 0.94235 0.98971 1.20973 0.97706 1.11710 0.93901 1.18051 0.92236 0.88229 0.92480 1.19725 0.96543 1.20271 1.12100 0.90719 1.26855 0.97210 0.99889 0.92411 1.69608 1.29099 1.34084 1.11591 0.85576 0.78282 0.77389 0.80544 1.18826 1.19690 1.17879 1.20797 0.92970 1.15238 0.99273 1.20560 0.96517 0.93296 0.93972 0.93803 0.88630 0.92269 0.87587 0.91762 0.91591 0.86958 0.88876 0.90995 0.92729 0.92795 0.75204 0.83880 0.85984 0.88851 0.88288 0.87698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.82 113.37 1.23 1.53 16 2 O -0.40 -7.51 9.74 -148.98 -1.45 -8.96 16 3 C 0.07 1.08 2.21 30.68 0.07 1.15 16 4 H 0.07 1.19 7.79 -2.39 -0.02 1.17 16 5 C 0.05 0.66 6.47 72.01 0.47 1.12 16 6 O -0.39 -6.47 10.77 -148.98 -1.60 -8.08 16 7 C 0.06 0.70 6.84 72.01 0.49 1.19 16 8 C -0.15 -2.11 5.26 30.68 0.16 -1.95 16 9 C -0.09 -1.59 2.03 -10.67 -0.02 -1.61 16 10 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 11 C 0.14 3.36 5.01 86.38 0.43 3.79 16 12 N -0.72 -19.85 5.27 -466.15 -2.46 -22.30 16 13 C 0.57 21.80 7.76 86.73 0.67 22.47 16 14 O -0.60 -27.38 16.32 -3.99 -0.07 -27.45 16 15 C -0.28 -11.47 5.89 -19.93 -0.12 -11.58 16 16 C -0.03 -1.08 9.47 22.25 0.21 -0.87 16 17 C -0.22 -9.27 9.73 22.47 0.22 -9.05 16 18 C 0.09 4.51 5.11 -21.28 -0.11 4.40 16 19 C -0.46 -23.88 9.56 23.46 0.22 -23.65 16 20 H 0.07 4.07 8.06 -2.91 -0.02 4.05 16 21 C 0.06 2.81 5.40 85.35 0.46 3.27 16 22 N -0.82 -41.90 13.92 21.87 0.30 -41.60 16 23 Si 0.96 41.55 24.52 68.60 1.68 43.23 16 24 H -0.26 -11.12 6.71 99.48 0.67 -10.45 16 25 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 26 H -0.26 -11.52 6.87 99.48 0.68 -10.84 16 27 C -0.26 -12.60 7.11 22.47 0.16 -12.44 16 28 C -0.02 -1.10 9.52 22.25 0.21 -0.89 16 29 H 0.04 0.59 8.09 -2.38 -0.02 0.57 16 30 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 0.57 7.95 -2.38 -0.02 0.55 16 32 H 0.11 1.24 7.95 -2.39 -0.02 1.22 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.09 1.18 7.31 -2.38 -0.02 1.17 16 37 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.05 1.57 7.65 -2.39 -0.02 1.55 16 39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.41 8.88 5.71 -92.70 -0.53 8.35 16 41 H 0.14 3.67 6.37 -2.91 -0.02 3.65 16 42 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 43 H 0.30 13.72 8.29 -92.71 -0.77 12.95 16 44 H 0.10 4.74 4.72 -2.91 -0.01 4.73 16 45 H 0.10 4.70 7.63 -2.91 -0.02 4.68 16 Total: -1.00 -64.32 361.99 1.58 -62.74 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.41 Total: 25.54 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 4.76 Total: -23.12 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: -2.15 Total: -63.90 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -3.12 Total: -44.49 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 1.68 Total: 43.23 kcal Total: -64.32 1.58 -62.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452647863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.370 kcal (2) G-P(sol) polarization free energy of solvation -64.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds