Wall clock time and date at job start Tue Mar 31 2020 12:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00163 * 2 1 4 4 H 1.09003 * 109.52175 * 329.99478 * 3 2 1 5 5 C 1.53081 * 109.57448 * 90.15924 * 3 2 1 6 6 O 1.42900 * 109.41979 * 62.32769 * 5 3 2 7 7 C 1.42908 * 114.09703 * 61.15640 * 6 5 3 8 8 C 1.53088 * 109.41509 * 298.84645 * 7 6 5 9 9 C 1.53180 * 109.52241 * 209.87741 * 3 2 1 10 10 H 1.08997 * 109.54185 * 177.14531 * 9 3 2 11 11 C 1.53005 * 109.54505 * 56.87666 * 9 3 2 12 12 N 1.46500 * 109.46905 * 175.00276 * 11 9 3 13 13 C 1.34779 * 119.99704 * 180.02562 * 12 11 9 14 14 O 1.21579 * 120.00445 * 359.97438 * 13 12 11 15 15 C 1.47638 * 119.99724 * 179.97438 * 13 12 11 16 16 C 1.40017 * 119.89995 * 359.72428 * 15 13 12 17 17 C 1.36319 * 120.10953 * 179.71450 * 16 15 13 18 18 C 1.40885 * 119.89162 * 0.56057 * 17 16 15 19 19 C 1.41100 * 120.10419 * 179.74163 * 18 17 16 20 20 H 1.08011 * 119.99889 * 204.62398 * 19 18 17 21 21 C 1.40227 * 120.00177 * 24.61741 * 19 18 17 22 22 N 1.30638 * 119.99916 * 17.89138 * 21 19 18 23 23 Si 1.86806 * 119.99973 * 197.88942 * 21 19 18 24 24 H 1.48499 * 109.47183 * 59.99841 * 23 21 19 25 25 H 1.48504 * 109.46983 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47086 * 300.00014 * 23 21 19 27 27 C 1.40890 * 119.78983 * 359.71155 * 18 17 16 28 28 C 1.36314 * 119.89860 * 0.02562 * 27 18 17 29 29 H 1.08999 * 109.46933 * 60.00347 * 1 2 3 30 30 H 1.08999 * 109.46989 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46732 * 299.99986 * 1 2 3 32 32 H 1.09007 * 109.48212 * 182.31264 * 5 3 2 33 33 H 1.09000 * 109.48113 * 302.34357 * 5 3 2 34 34 H 1.08998 * 109.47999 * 178.86489 * 7 6 5 35 35 H 1.09001 * 109.48913 * 58.83460 * 7 6 5 36 36 H 1.09005 * 109.52563 * 297.70437 * 8 7 6 37 37 H 1.09000 * 109.52245 * 177.51440 * 8 7 6 38 38 H 1.08999 * 109.47133 * 294.99946 * 11 9 3 39 39 H 1.08998 * 109.46881 * 55.00486 * 11 9 3 40 40 H 0.97001 * 120.00190 * 359.97438 * 12 11 9 41 41 H 1.08009 * 119.93997 * 359.97438 * 16 15 13 42 42 H 1.07999 * 120.05091 * 180.27842 * 17 16 15 43 43 H 0.96998 * 120.00209 * 180.02562 * 22 21 19 44 44 H 1.08002 * 120.05106 * 180.02562 * 27 18 17 45 45 H 1.08000 * 119.95226 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3457 2.0001 -0.5138 5 6 2.2225 1.7723 1.4423 6 8 3.1394 0.8928 2.0964 7 6 4.4354 0.8492 1.4957 8 6 4.3121 0.3452 0.0554 9 6 3.3621 1.2639 -0.7192 10 1 3.7823 2.2686 -0.7639 11 6 3.1708 0.7234 -2.1378 12 7 4.4414 0.7958 -2.8633 13 6 4.5131 0.3718 -4.1407 14 8 3.5234 -0.0711 -4.6907 15 6 5.7934 0.4453 -4.8721 16 6 6.9305 0.9611 -4.2386 17 6 8.1163 1.0256 -4.9080 18 6 8.1937 0.5831 -6.2433 19 6 9.4175 0.6528 -6.9422 20 1 9.4211 0.7044 -8.0210 21 6 10.6290 0.6551 -6.2361 22 7 10.6625 0.2488 -4.9950 23 14 12.1951 1.2392 -7.0703 24 1 12.0291 2.6501 -7.5026 25 1 13.3293 1.1433 -6.1165 26 1 12.4720 0.3878 -8.2551 27 6 7.0454 0.0701 -6.8784 28 6 5.8653 0.0046 -6.1992 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.6277 2.7843 1.4410 33 1 1.2696 1.7629 1.9714 34 1 5.0765 0.1746 2.0632 35 1 4.8698 1.8489 1.4950 36 1 3.9156 -0.6703 0.0575 37 1 5.2936 0.3530 -0.4185 38 1 2.8384 -0.3136 -2.0897 39 1 2.4216 1.3215 -2.6564 40 1 5.2310 1.1495 -2.4247 41 1 6.8690 1.3046 -3.2164 42 1 8.9939 1.4195 -4.4169 43 1 11.5004 0.2508 -4.5064 44 1 7.1001 -0.2707 -7.9018 45 1 4.9847 -0.3888 -6.6851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452647874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:27 Heat of formation + Delta-G solvation = -121.138345 kcal Electronic energy + Delta-G solvation = -26507.821844 eV Core-core repulsion = 22682.504598 eV Total energy + Delta-G solvation = -3825.317246 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.25013 -38.94307 -37.18109 -37.12695 -35.27842 -33.87514 -32.52456 -30.76385 -30.20870 -29.44759 -27.51031 -26.79976 -25.67414 -23.64109 -23.02123 -21.64730 -20.89720 -20.24257 -19.54991 -17.53858 -17.14148 -16.85763 -16.42709 -16.07972 -15.66474 -15.54529 -15.36996 -14.81501 -14.55534 -14.16554 -14.04642 -13.82841 -13.36946 -13.23057 -13.16914 -12.72359 -12.60965 -12.37177 -12.08655 -12.01868 -11.87638 -11.55388 -11.35762 -11.27280 -11.15293 -10.99447 -10.90605 -10.65713 -10.55744 -10.26455 -10.06880 -9.56557 -9.37358 -9.33446 -8.94457 -8.55994 -7.72817 -7.54673 -7.04354 -4.60975 2.23843 2.91822 2.93388 2.97602 3.02975 3.40942 3.72937 3.75913 3.78519 3.88198 4.43951 4.49436 4.56355 4.64509 4.70687 4.98208 5.06408 5.10937 5.16741 5.21549 5.26511 5.40857 5.44470 5.51554 5.56352 5.65762 5.78437 5.86185 5.96565 6.02723 6.17481 6.27171 6.31816 6.76128 6.81951 6.83577 6.94521 7.06077 7.09573 7.13004 7.42762 7.64934 7.78568 7.85071 8.06500 8.25091 8.38928 8.62349 8.74715 9.09740 9.87670 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020956 B = 0.002614 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.782946 B =10707.766645 C =11813.637141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.366 6.366 3 C 0.062 3.938 4 H 0.072 0.928 5 C 0.042 3.958 6 O -0.373 6.373 7 C 0.060 3.940 8 C -0.148 4.148 9 C -0.098 4.098 10 H 0.088 0.912 11 C 0.135 3.865 12 N -0.742 5.742 13 C 0.571 3.429 14 O -0.576 6.576 15 C -0.284 4.284 16 C -0.063 4.063 17 C -0.178 4.178 18 C 0.129 3.871 19 C -0.443 4.443 20 H 0.084 0.916 21 C 0.075 3.925 22 N -0.772 5.772 23 Si 0.914 3.086 24 H -0.260 1.260 25 H -0.276 1.276 26 H -0.262 1.262 27 C -0.239 4.239 28 C -0.022 4.022 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.038 0.962 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.049 0.951 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.395 0.605 41 H 0.087 0.913 42 H 0.120 0.880 43 H 0.287 0.713 44 H 0.098 0.902 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.990 4.691 12.752 16.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C 0.003 3.997 4 H 0.090 0.910 5 C -0.035 4.035 6 O -0.291 6.291 7 C -0.016 4.016 8 C -0.186 4.186 9 C -0.117 4.117 10 H 0.106 0.894 11 C 0.011 3.989 12 N -0.395 5.395 13 C 0.366 3.634 14 O -0.458 6.458 15 C -0.289 4.289 16 C -0.082 4.082 17 C -0.198 4.198 18 C 0.125 3.875 19 C -0.471 4.471 20 H 0.102 0.898 21 C -0.147 4.147 22 N -0.395 5.395 23 Si 0.737 3.263 24 H -0.185 1.185 25 H -0.201 1.201 26 H -0.187 1.187 27 C -0.259 4.259 28 C -0.041 4.041 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.231 0.769 41 H 0.106 0.894 42 H 0.138 0.862 43 H 0.098 0.902 44 H 0.116 0.884 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.471 4.040 12.743 16.980 hybrid contribution 0.989 0.772 -0.269 1.283 sum -9.482 4.811 12.473 16.391 Atomic orbital electron populations 1.22810 0.81315 1.02948 0.99645 1.88009 1.19259 1.26344 1.94864 1.22735 0.94890 0.86134 0.95915 0.90994 1.23043 0.94348 0.93059 0.93052 1.87955 1.22225 1.65497 1.53458 1.22628 0.84671 1.00632 0.93709 1.22203 1.00028 1.00993 0.95375 1.21560 0.94714 1.00469 0.94951 0.89398 1.21083 0.86771 1.01801 0.89233 1.45909 1.11971 1.67647 1.14009 1.18574 0.88963 0.75620 0.80244 1.90631 1.38464 1.48289 1.68378 1.18912 0.92437 1.20821 0.96697 1.20458 0.93055 0.97801 0.96873 1.20970 0.96461 1.05897 0.96437 1.17776 0.92154 0.85673 0.91859 1.19817 0.90111 1.41919 0.95247 0.89756 1.26094 1.01680 0.92193 0.94694 1.69732 1.29518 1.30035 1.10214 0.86266 0.79325 0.80651 0.80054 1.18482 1.20051 1.18654 1.20720 0.93986 1.10886 1.00275 1.20364 0.96525 0.94586 0.92635 0.93980 0.89535 0.94298 0.92272 0.88859 0.88632 0.93249 0.89809 0.90433 0.91040 0.92444 0.76924 0.89447 0.86208 0.90181 0.88394 0.88131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.37 -4.25 9.08 -42.60 -0.39 -4.64 16 3 C 0.06 0.61 2.43 -26.60 -0.06 0.55 16 4 H 0.07 0.60 7.79 -51.93 -0.40 0.19 16 5 C 0.04 0.38 6.49 37.20 0.24 0.62 16 6 O -0.37 -4.24 10.70 -42.60 -0.46 -4.69 16 7 C 0.06 0.59 6.84 37.20 0.25 0.84 16 8 C -0.15 -1.63 5.10 -26.59 -0.14 -1.77 16 9 C -0.10 -1.06 2.14 -90.43 -0.19 -1.26 16 10 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 11 C 0.14 1.95 4.81 -4.04 -0.02 1.93 16 12 N -0.74 -12.37 5.27 -61.31 -0.32 -12.69 16 13 C 0.57 12.28 7.76 -12.42 -0.10 12.18 16 14 O -0.58 -13.97 16.32 5.30 0.09 -13.88 16 15 C -0.28 -6.51 5.89 -104.73 -0.62 -7.13 16 16 C -0.06 -1.38 9.47 -39.61 -0.38 -1.75 16 17 C -0.18 -4.34 8.63 -39.27 -0.34 -4.67 16 18 C 0.13 3.27 5.58 -106.81 -0.60 2.67 16 19 C -0.44 -10.99 9.04 -37.75 -0.34 -11.33 16 20 H 0.08 1.99 7.91 -52.48 -0.42 1.58 16 21 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 22 N -0.77 -18.36 10.95 55.56 0.61 -17.75 16 23 Si 0.91 17.16 29.60 -169.99 -5.03 12.13 16 24 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 25 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 26 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 27 C -0.24 -5.81 9.73 -39.27 -0.38 -6.19 16 28 C -0.02 -0.52 9.52 -39.61 -0.38 -0.90 16 29 H 0.04 0.33 8.09 -51.93 -0.42 -0.09 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.27 7.85 -51.93 -0.41 -0.14 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.72 7.85 -51.93 -0.41 0.31 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 1.08 7.83 -51.93 -0.41 0.67 16 37 H 0.08 0.84 7.31 -51.93 -0.38 0.46 16 38 H 0.07 1.17 7.78 -51.93 -0.40 0.76 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.40 5.82 5.71 -40.82 -0.23 5.59 16 41 H 0.09 1.61 6.37 -52.48 -0.33 1.27 16 42 H 0.12 2.94 6.16 -52.49 -0.32 2.61 16 43 H 0.29 6.15 8.29 -40.82 -0.34 5.81 16 44 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 45 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -29.90 366.12 -8.65 -38.55 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -6.63 Total: 10.68 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -2.04 Total: -13.22 kcal Atomic # 7 Polarization: -30.73 SS G_CDS: 0.29 Total: -30.44 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.76 Total: -23.22 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.13 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.90 -8.65 -38.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452647874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.586 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds