Wall clock time and date at job start Tue Mar 31 2020 12:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00163 * 2 1 4 4 H 1.09003 * 109.52175 * 329.99478 * 3 2 1 5 5 C 1.53081 * 109.57448 * 90.15924 * 3 2 1 6 6 O 1.42900 * 109.41979 * 62.32769 * 5 3 2 7 7 C 1.42908 * 114.09703 * 61.15640 * 6 5 3 8 8 C 1.53088 * 109.41509 * 298.84645 * 7 6 5 9 9 C 1.53180 * 109.52241 * 209.87741 * 3 2 1 10 10 H 1.08997 * 109.54185 * 177.14531 * 9 3 2 11 11 C 1.53005 * 109.54505 * 56.87666 * 9 3 2 12 12 N 1.46500 * 109.46905 * 175.00276 * 11 9 3 13 13 C 1.34779 * 119.99704 * 180.02562 * 12 11 9 14 14 O 1.21579 * 120.00445 * 359.97438 * 13 12 11 15 15 C 1.47638 * 119.99724 * 179.97438 * 13 12 11 16 16 C 1.40017 * 119.89995 * 359.72428 * 15 13 12 17 17 C 1.36319 * 120.10953 * 179.71450 * 16 15 13 18 18 C 1.40885 * 119.89162 * 0.56057 * 17 16 15 19 19 C 1.41100 * 120.10419 * 179.74163 * 18 17 16 20 20 H 1.08011 * 119.99889 * 204.62398 * 19 18 17 21 21 C 1.40227 * 120.00177 * 24.61741 * 19 18 17 22 22 N 1.30638 * 119.99916 * 17.89138 * 21 19 18 23 23 Si 1.86806 * 119.99973 * 197.88942 * 21 19 18 24 24 H 1.48499 * 109.47183 * 59.99841 * 23 21 19 25 25 H 1.48504 * 109.46983 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47086 * 300.00014 * 23 21 19 27 27 C 1.40890 * 119.78983 * 359.71155 * 18 17 16 28 28 C 1.36314 * 119.89860 * 0.02562 * 27 18 17 29 29 H 1.08999 * 109.46933 * 60.00347 * 1 2 3 30 30 H 1.08999 * 109.46989 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46732 * 299.99986 * 1 2 3 32 32 H 1.09007 * 109.48212 * 182.31264 * 5 3 2 33 33 H 1.09000 * 109.48113 * 302.34357 * 5 3 2 34 34 H 1.08998 * 109.47999 * 178.86489 * 7 6 5 35 35 H 1.09001 * 109.48913 * 58.83460 * 7 6 5 36 36 H 1.09005 * 109.52563 * 297.70437 * 8 7 6 37 37 H 1.09000 * 109.52245 * 177.51440 * 8 7 6 38 38 H 1.08999 * 109.47133 * 294.99946 * 11 9 3 39 39 H 1.08998 * 109.46881 * 55.00486 * 11 9 3 40 40 H 0.97001 * 120.00190 * 359.97438 * 12 11 9 41 41 H 1.08009 * 119.93997 * 359.97438 * 16 15 13 42 42 H 1.07999 * 120.05091 * 180.27842 * 17 16 15 43 43 H 0.96998 * 120.00209 * 180.02562 * 22 21 19 44 44 H 1.08002 * 120.05106 * 180.02562 * 27 18 17 45 45 H 1.08000 * 119.95226 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3457 2.0001 -0.5138 5 6 2.2225 1.7723 1.4423 6 8 3.1394 0.8928 2.0964 7 6 4.4354 0.8492 1.4957 8 6 4.3121 0.3452 0.0554 9 6 3.3621 1.2639 -0.7192 10 1 3.7823 2.2686 -0.7639 11 6 3.1708 0.7234 -2.1378 12 7 4.4414 0.7958 -2.8633 13 6 4.5131 0.3718 -4.1407 14 8 3.5234 -0.0711 -4.6907 15 6 5.7934 0.4453 -4.8721 16 6 6.9305 0.9611 -4.2386 17 6 8.1163 1.0256 -4.9080 18 6 8.1937 0.5831 -6.2433 19 6 9.4175 0.6528 -6.9422 20 1 9.4211 0.7044 -8.0210 21 6 10.6290 0.6551 -6.2361 22 7 10.6625 0.2488 -4.9950 23 14 12.1951 1.2392 -7.0703 24 1 12.0291 2.6501 -7.5026 25 1 13.3293 1.1433 -6.1165 26 1 12.4720 0.3878 -8.2551 27 6 7.0454 0.0701 -6.8784 28 6 5.8653 0.0046 -6.1992 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.6277 2.7843 1.4410 33 1 1.2696 1.7629 1.9714 34 1 5.0765 0.1746 2.0632 35 1 4.8698 1.8489 1.4950 36 1 3.9156 -0.6703 0.0575 37 1 5.2936 0.3530 -0.4185 38 1 2.8384 -0.3136 -2.0897 39 1 2.4216 1.3215 -2.6564 40 1 5.2310 1.1495 -2.4247 41 1 6.8690 1.3046 -3.2164 42 1 8.9939 1.4195 -4.4169 43 1 11.5004 0.2508 -4.5064 44 1 7.1001 -0.2707 -7.9018 45 1 4.9847 -0.3888 -6.6851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452647874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:27 Heat of formation + Delta-G solvation = -139.554402 kcal Electronic energy + Delta-G solvation = -26508.620424 eV Core-core repulsion = 22682.504598 eV Total energy + Delta-G solvation = -3826.115826 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.20790 -40.47848 -38.89950 -37.93909 -36.54019 -35.66920 -33.78635 -31.95785 -31.48475 -31.29338 -28.78706 -27.47737 -27.27241 -24.44052 -24.24642 -23.19970 -22.68012 -21.37772 -20.90982 -19.36470 -18.57952 -17.64712 -17.36557 -17.35180 -16.98185 -16.55151 -16.43220 -15.95911 -15.83051 -15.74469 -15.31414 -15.01535 -14.89686 -14.53658 -14.44382 -14.12341 -13.85723 -13.66722 -13.41825 -13.23639 -13.18011 -12.92543 -12.84698 -12.63024 -12.35987 -12.25876 -12.03578 -11.79095 -11.70058 -11.38929 -11.35552 -11.11335 -11.01476 -10.73795 -10.11603 -10.03084 -9.57241 -9.40286 -8.79137 -6.48069 0.44604 1.15250 1.39512 1.44860 1.52649 2.12611 2.18296 2.35550 2.73752 2.78992 3.07457 3.61042 3.66799 3.69482 3.76652 3.91913 4.24653 4.28885 4.30327 4.32015 4.39644 4.44516 4.49396 4.51121 4.57178 4.64343 4.72943 4.74986 4.87457 4.88504 4.92218 4.97272 5.03549 5.07568 5.16218 5.30320 5.31778 5.55122 5.59695 5.82456 5.94645 5.99427 6.13181 6.23001 6.39818 6.53926 6.70816 6.77317 6.89291 7.44191 8.15932 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020956 B = 0.002614 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.782946 B =10707.766645 C =11813.637141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.059 3.941 4 H 0.089 0.911 5 C 0.041 3.959 6 O -0.395 6.395 7 C 0.061 3.939 8 C -0.146 4.146 9 C -0.091 4.091 10 H 0.112 0.888 11 C 0.139 3.861 12 N -0.722 5.722 13 C 0.570 3.430 14 O -0.609 6.609 15 C -0.294 4.294 16 C -0.052 4.052 17 C -0.197 4.197 18 C 0.102 3.898 19 C -0.474 4.474 20 H 0.085 0.915 21 C 0.039 3.961 22 N -0.797 5.797 23 Si 0.987 3.013 24 H -0.258 1.258 25 H -0.263 1.263 26 H -0.260 1.260 27 C -0.254 4.254 28 C -0.033 4.033 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.408 0.592 41 H 0.125 0.875 42 H 0.116 0.884 43 H 0.298 0.702 44 H 0.103 0.897 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.381 6.319 14.279 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C 0.001 3.999 4 H 0.107 0.893 5 C -0.036 4.036 6 O -0.314 6.314 7 C -0.015 4.015 8 C -0.184 4.184 9 C -0.110 4.110 10 H 0.130 0.870 11 C 0.015 3.985 12 N -0.374 5.374 13 C 0.364 3.636 14 O -0.493 6.493 15 C -0.299 4.299 16 C -0.071 4.071 17 C -0.217 4.217 18 C 0.098 3.902 19 C -0.501 4.501 20 H 0.103 0.897 21 C -0.181 4.181 22 N -0.420 5.420 23 Si 0.807 3.193 24 H -0.182 1.182 25 H -0.187 1.187 26 H -0.184 1.184 27 C -0.274 4.274 28 C -0.053 4.053 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.245 0.755 41 H 0.143 0.857 42 H 0.133 0.867 43 H 0.109 0.891 44 H 0.121 0.879 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.874 5.677 14.316 18.294 hybrid contribution 0.710 0.218 -0.698 1.019 sum -9.165 5.895 13.618 17.441 Atomic orbital electron populations 1.22941 0.80032 1.03466 1.00708 1.87974 1.20846 1.27649 1.95084 1.22855 0.94361 0.85931 0.96769 0.89296 1.23199 0.94698 0.93592 0.92096 1.87927 1.22998 1.66380 1.54114 1.22680 0.84494 1.01819 0.92500 1.22158 0.99818 0.99756 0.96674 1.21566 0.95873 1.01228 0.92334 0.87048 1.21151 0.85366 1.00757 0.91199 1.45735 1.13463 1.65772 1.12456 1.18431 0.87922 0.75725 0.81563 1.90611 1.39247 1.49954 1.69525 1.19181 0.93570 1.20479 0.96659 1.20719 0.91763 0.96313 0.98291 1.21020 0.97181 1.07007 0.96458 1.18132 0.92827 0.86371 0.92831 1.20095 0.91041 1.43361 0.95602 0.89708 1.26914 1.04391 0.91537 0.95220 1.69748 1.31049 1.29841 1.11359 0.85166 0.75186 0.79931 0.79036 1.18187 1.18720 1.18399 1.20853 0.94197 1.11546 1.00777 1.20504 0.96376 0.94930 0.93459 0.93536 0.89455 0.92527 0.90069 0.87691 0.88208 0.91207 0.92380 0.90344 0.93303 0.92572 0.75507 0.85707 0.86653 0.89116 0.87886 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.82 113.37 1.23 1.62 16 2 O -0.40 -8.83 9.08 -141.93 -1.29 -10.11 16 3 C 0.06 1.04 2.43 30.68 0.07 1.11 16 4 H 0.09 1.23 7.79 -2.39 -0.02 1.21 16 5 C 0.04 0.61 6.49 72.01 0.47 1.08 16 6 O -0.40 -8.12 10.70 -141.93 -1.52 -9.64 16 7 C 0.06 1.06 6.84 72.01 0.49 1.56 16 8 C -0.15 -3.00 5.10 30.68 0.16 -2.84 16 9 C -0.09 -1.79 2.14 -10.67 -0.02 -1.81 16 10 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 11 C 0.14 3.85 4.81 86.38 0.42 4.27 16 12 N -0.72 -23.12 5.27 -466.16 -2.46 -25.58 16 13 C 0.57 24.32 7.76 86.73 0.67 24.99 16 14 O -0.61 -29.83 16.32 -3.96 -0.06 -29.89 16 15 C -0.29 -13.49 5.89 -19.93 -0.12 -13.60 16 16 C -0.05 -2.24 9.47 22.25 0.21 -2.03 16 17 C -0.20 -9.63 8.63 22.47 0.19 -9.43 16 18 C 0.10 5.26 5.58 -21.28 -0.12 5.14 16 19 C -0.47 -23.81 9.04 23.46 0.21 -23.60 16 20 H 0.08 4.09 7.91 -2.91 -0.02 4.06 16 21 C 0.04 1.78 5.14 85.35 0.44 2.21 16 22 N -0.80 -37.59 10.95 21.87 0.24 -37.35 16 23 Si 0.99 34.37 29.60 68.60 2.03 36.40 16 24 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 25 H -0.26 -8.56 7.11 99.48 0.71 -7.85 16 26 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 27 C -0.25 -12.70 9.73 22.47 0.22 -12.49 16 28 C -0.03 -1.63 9.52 22.25 0.21 -1.41 16 29 H 0.05 0.67 8.09 -2.39 -0.02 0.66 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 0.68 7.85 -2.39 -0.02 0.66 16 32 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.11 1.30 7.85 -2.39 -0.02 1.28 16 34 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 1.49 7.83 -2.38 -0.02 1.47 16 37 H 0.08 1.56 7.31 -2.39 -0.02 1.54 16 38 H 0.05 1.61 7.78 -2.39 -0.02 1.59 16 39 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.41 11.03 5.71 -92.71 -0.53 10.50 16 41 H 0.13 4.30 6.37 -2.91 -0.02 4.28 16 42 H 0.12 5.66 6.16 -2.91 -0.02 5.65 16 43 H 0.30 12.47 8.29 -92.71 -0.77 11.70 16 44 H 0.10 4.85 8.06 -2.91 -0.02 4.82 16 45 H 0.10 4.78 7.63 -2.91 -0.02 4.75 16 Total: -1.00 -65.63 366.12 2.15 -63.48 By element: Atomic # 1 Polarization: 37.47 SS G_CDS: 0.47 Total: 37.94 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: 4.73 Total: -25.24 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: -2.22 Total: -62.93 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: -2.87 Total: -49.65 kcal Atomic # 14 Polarization: 34.37 SS G_CDS: 2.03 Total: 36.40 kcal Total: -65.63 2.15 -63.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452647874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.071 kcal (2) G-P(sol) polarization free energy of solvation -65.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds