Wall clock time and date at job start Tue Mar 31 2020 12:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 113.99963 * 2 1 4 4 H 1.08998 * 109.57884 * 29.84363 * 3 2 1 5 5 C 1.53097 * 109.52181 * 269.68535 * 3 2 1 6 6 O 1.42895 * 109.41484 * 297.70424 * 5 3 2 7 7 C 1.42902 * 114.09907 * 298.83659 * 6 5 3 8 8 C 1.53093 * 109.41156 * 61.16298 * 7 6 5 9 9 C 1.53175 * 109.52610 * 150.00283 * 3 2 1 10 10 H 1.08998 * 109.62218 * 182.83384 * 9 3 2 11 11 C 1.53000 * 109.54053 * 303.06084 * 9 3 2 12 12 N 1.46508 * 109.47123 * 184.55632 * 11 9 3 13 13 C 1.34770 * 119.99885 * 179.97438 * 12 11 9 14 14 O 1.21593 * 120.00522 * 359.97438 * 13 12 11 15 15 C 1.47642 * 120.00137 * 179.97438 * 13 12 11 16 16 C 1.40006 * 119.90106 * 180.02562 * 15 13 12 17 17 C 1.36322 * 120.11163 * 179.97438 * 16 15 13 18 18 C 1.40881 * 119.88887 * 359.97438 * 17 16 15 19 19 C 1.41108 * 120.10470 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99764 * 335.47662 * 19 18 17 21 21 C 1.40228 * 120.00106 * 155.47291 * 19 18 17 22 22 N 1.30645 * 119.99872 * 342.27683 * 21 19 18 23 23 Si 1.86795 * 120.00027 * 162.28277 * 21 19 18 24 24 H 1.48504 * 109.47315 * 180.02562 * 23 21 19 25 25 H 1.48499 * 109.46967 * 299.99752 * 23 21 19 26 26 H 1.48504 * 109.47445 * 59.99714 * 23 21 19 27 27 C 1.40891 * 119.79318 * 0.25813 * 18 17 16 28 28 C 1.36317 * 119.89470 * 359.50287 * 27 18 17 29 29 H 1.09001 * 109.47027 * 299.99669 * 1 2 3 30 30 H 1.09000 * 109.47146 * 59.99972 * 1 2 3 31 31 H 1.08996 * 109.46897 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47726 * 177.71525 * 5 3 2 33 33 H 1.09003 * 109.48785 * 57.69662 * 5 3 2 34 34 H 1.08998 * 109.48217 * 301.17770 * 7 6 5 35 35 H 1.09005 * 109.49115 * 181.14739 * 7 6 5 36 36 H 1.09004 * 109.52448 * 182.48257 * 8 7 6 37 37 H 1.08998 * 109.57480 * 62.32545 * 8 7 6 38 38 H 1.08997 * 109.47797 * 64.54999 * 11 9 3 39 39 H 1.09001 * 109.47069 * 304.55265 * 11 9 3 40 40 H 0.96993 * 119.99818 * 359.97438 * 12 11 9 41 41 H 1.08006 * 119.94653 * 359.97438 * 16 15 13 42 42 H 1.07999 * 120.05174 * 179.97438 * 17 16 15 43 43 H 0.96998 * 120.00158 * 179.97438 * 22 21 19 44 44 H 1.08007 * 120.05140 * 179.72192 * 27 18 17 45 45 H 1.07996 * 119.94951 * 180.21275 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 2.0014 0.5110 5 6 2.2256 1.7696 -1.4429 6 8 3.1432 0.8883 -2.0934 7 6 4.4380 0.8453 -1.4903 8 6 4.3116 0.3440 -0.0493 9 6 3.3607 1.2646 0.7218 10 1 3.7821 2.2688 0.7668 11 6 3.1664 0.7268 2.1409 12 7 4.4381 0.7902 2.8655 13 6 4.5075 0.3668 4.1431 14 8 3.5146 -0.0673 4.6946 15 6 5.7892 0.4301 4.8732 16 6 5.8590 -0.0107 6.2002 17 6 7.0403 0.0453 6.8783 18 6 8.1923 0.5473 6.2413 19 6 9.4173 0.6079 6.9390 20 1 9.4223 0.6593 8.0177 21 6 10.6281 0.6013 6.2317 22 7 10.6567 0.1979 4.9894 23 14 12.2001 1.1690 7.0657 24 1 13.3323 1.0668 6.1102 25 1 12.0472 2.5803 7.5019 26 1 12.4706 0.3121 8.2480 27 6 8.1160 0.9944 4.9074 28 6 6.9314 0.9299 4.2359 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.6312 2.7813 -1.4426 33 1 1.2737 1.7598 -1.9739 34 1 4.8726 1.8449 -1.4906 35 1 5.0802 0.1695 -2.0552 36 1 5.2923 0.3522 0.4266 37 1 3.9153 -0.6714 -0.0493 38 1 2.8259 -0.3076 2.0942 39 1 2.4221 1.3311 2.6597 40 1 5.2301 1.1368 2.4258 41 1 4.9755 -0.3959 6.6876 42 1 7.0930 -0.2947 7.9020 43 1 11.4942 0.1937 4.5000 44 1 8.9955 1.3843 4.4164 45 1 6.8727 1.2692 3.2123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452647876.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:32 Heat of formation + Delta-G solvation = -121.137369 kcal Electronic energy + Delta-G solvation = -26510.401848 eV Core-core repulsion = 22685.084644 eV Total energy + Delta-G solvation = -3825.317204 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.25071 -38.94237 -37.18084 -37.12662 -35.27913 -33.87303 -32.52257 -30.76308 -30.20878 -29.44724 -27.51168 -26.79852 -25.67432 -23.64267 -23.02133 -21.64757 -20.89755 -20.23938 -19.55203 -17.53812 -17.14270 -16.85774 -16.42591 -16.08123 -15.66390 -15.54552 -15.36958 -14.81400 -14.55627 -14.16548 -14.04645 -13.82740 -13.37368 -13.22823 -13.16846 -12.72251 -12.60882 -12.37201 -12.08683 -12.01874 -11.87623 -11.55417 -11.35754 -11.27279 -11.15102 -10.99446 -10.90643 -10.65527 -10.55667 -10.26471 -10.06692 -9.56427 -9.37604 -9.33551 -8.94439 -8.56058 -7.72737 -7.54650 -7.04264 -4.61000 2.23840 2.91851 2.93485 2.97577 3.02919 3.40969 3.72994 3.75872 3.78548 3.88191 4.44012 4.49406 4.56372 4.64473 4.70741 4.98158 5.06446 5.10961 5.16754 5.21620 5.26513 5.40876 5.44456 5.51575 5.56447 5.65793 5.78297 5.86130 5.96529 6.02778 6.17555 6.27139 6.31715 6.76086 6.82052 6.83664 6.94419 7.05994 7.09639 7.12991 7.42768 7.64900 7.78540 7.85125 8.06507 8.25046 8.38937 8.62380 8.74685 9.09657 9.87815 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020945 B = 0.002616 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.492811 B =10700.158053 C =11807.296613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.366 6.366 3 C 0.062 3.938 4 H 0.072 0.928 5 C 0.042 3.958 6 O -0.373 6.373 7 C 0.060 3.940 8 C -0.148 4.148 9 C -0.098 4.098 10 H 0.088 0.912 11 C 0.135 3.865 12 N -0.742 5.742 13 C 0.571 3.429 14 O -0.576 6.576 15 C -0.284 4.284 16 C -0.022 4.022 17 C -0.239 4.239 18 C 0.129 3.871 19 C -0.443 4.443 20 H 0.084 0.916 21 C 0.075 3.925 22 N -0.772 5.772 23 Si 0.914 3.086 24 H -0.276 1.276 25 H -0.261 1.261 26 H -0.262 1.262 27 C -0.178 4.178 28 C -0.062 4.062 29 H 0.042 0.958 30 H 0.038 0.962 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.049 0.951 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.395 0.605 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.287 0.713 44 H 0.120 0.880 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.976 4.736 -12.749 16.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C 0.003 3.997 4 H 0.090 0.910 5 C -0.035 4.035 6 O -0.291 6.291 7 C -0.016 4.016 8 C -0.186 4.186 9 C -0.117 4.117 10 H 0.106 0.894 11 C 0.011 3.989 12 N -0.395 5.395 13 C 0.366 3.634 14 O -0.458 6.458 15 C -0.289 4.289 16 C -0.041 4.041 17 C -0.259 4.259 18 C 0.126 3.874 19 C -0.471 4.471 20 H 0.102 0.898 21 C -0.147 4.147 22 N -0.395 5.395 23 Si 0.737 3.263 24 H -0.201 1.201 25 H -0.185 1.185 26 H -0.187 1.187 27 C -0.198 4.198 28 C -0.082 4.082 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.231 0.769 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.098 0.902 44 H 0.138 0.862 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.460 4.091 -12.738 16.982 hybrid contribution 0.993 0.756 0.267 1.277 sum -9.466 4.847 -12.471 16.390 Atomic orbital electron populations 1.22810 0.81314 1.02949 0.99647 1.88010 1.19259 1.26337 1.94863 1.22732 0.94888 0.86138 0.95908 0.90982 1.23045 0.94330 0.93037 0.93088 1.87952 1.22281 1.65366 1.53529 1.22627 0.84699 1.00642 0.93664 1.22202 1.00015 1.00990 0.95393 1.21558 0.94730 1.00474 0.94941 0.89395 1.21086 0.86752 1.01820 0.89251 1.45906 1.11734 1.67912 1.13970 1.18577 0.89029 0.75557 0.80242 1.90635 1.38292 1.48536 1.68311 1.18911 0.92256 1.21030 0.96656 1.20364 0.96552 0.94532 0.92659 1.20721 0.93887 1.11014 1.00254 1.17777 0.92161 0.85645 0.91859 1.19818 0.90091 1.41949 0.95242 0.89758 1.26096 1.01717 0.92157 0.94698 1.69734 1.29632 1.30025 1.10144 0.86262 0.79333 0.80634 0.80045 1.20053 1.18490 1.18651 1.20974 0.96512 1.05845 0.96431 1.20454 0.93038 0.97847 0.96834 0.93978 0.94297 0.89535 0.92279 0.88857 0.93249 0.88629 0.90447 0.89807 0.91040 0.92440 0.76922 0.88132 0.88392 0.90185 0.86217 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.37 -4.25 9.07 -42.73 -0.39 -4.64 16 3 C 0.06 0.61 2.43 -26.59 -0.06 0.55 16 4 H 0.07 0.60 7.79 -51.93 -0.40 0.19 16 5 C 0.04 0.38 6.49 37.21 0.24 0.62 16 6 O -0.37 -4.24 10.69 -42.73 -0.46 -4.69 16 7 C 0.06 0.59 6.84 37.21 0.25 0.85 16 8 C -0.15 -1.63 5.10 -26.59 -0.14 -1.77 16 9 C -0.10 -1.07 2.15 -90.44 -0.19 -1.26 16 10 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 11 C 0.14 1.94 4.83 -4.04 -0.02 1.92 16 12 N -0.74 -12.37 5.26 -61.31 -0.32 -12.69 16 13 C 0.57 12.27 7.76 -12.42 -0.10 12.18 16 14 O -0.58 -13.97 16.32 5.28 0.09 -13.89 16 15 C -0.28 -6.51 5.89 -104.73 -0.62 -7.12 16 16 C -0.02 -0.52 9.52 -39.61 -0.38 -0.90 16 17 C -0.24 -5.81 9.73 -39.27 -0.38 -6.19 16 18 C 0.13 3.27 5.57 -106.80 -0.60 2.68 16 19 C -0.44 -10.99 9.04 -37.75 -0.34 -11.33 16 20 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 21 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 22 N -0.77 -18.37 10.95 55.56 0.61 -17.76 16 23 Si 0.91 17.17 29.60 -169.99 -5.03 12.14 16 24 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 25 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 26 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 27 C -0.18 -4.34 8.63 -39.27 -0.34 -4.67 16 28 C -0.06 -1.37 9.47 -39.61 -0.38 -1.75 16 29 H 0.04 0.33 8.09 -51.93 -0.42 -0.09 16 30 H 0.04 0.27 7.86 -51.93 -0.41 -0.14 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.72 7.86 -51.93 -0.41 0.31 16 34 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.84 7.28 -51.93 -0.38 0.46 16 37 H 0.08 1.08 7.83 -51.93 -0.41 0.68 16 38 H 0.07 1.17 7.76 -51.93 -0.40 0.76 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.40 5.82 5.68 -40.82 -0.23 5.59 16 41 H 0.10 2.32 7.63 -52.48 -0.40 1.92 16 42 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 43 H 0.29 6.15 8.29 -40.82 -0.34 5.81 16 44 H 0.12 2.94 6.16 -52.48 -0.32 2.61 16 45 H 0.09 1.61 6.37 -52.49 -0.33 1.28 16 LS Contribution 366.07 15.07 5.52 5.52 Total: -1.00 -29.91 366.07 -8.65 -38.56 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -6.63 Total: 10.69 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -2.04 Total: -13.22 kcal Atomic # 7 Polarization: -30.74 SS G_CDS: 0.29 Total: -30.46 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.76 Total: -23.22 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.91 -8.65 -38.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452647876.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.579 kcal (2) G-P(sol) polarization free energy of solvation -29.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds