Wall clock time and date at job start Tue Mar 31 2020 12:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 113.99963 * 2 1 4 4 H 1.08998 * 109.57884 * 29.84363 * 3 2 1 5 5 C 1.53097 * 109.52181 * 269.68535 * 3 2 1 6 6 O 1.42895 * 109.41484 * 297.70424 * 5 3 2 7 7 C 1.42902 * 114.09907 * 298.83659 * 6 5 3 8 8 C 1.53093 * 109.41156 * 61.16298 * 7 6 5 9 9 C 1.53175 * 109.52610 * 150.00283 * 3 2 1 10 10 H 1.08998 * 109.62218 * 182.83384 * 9 3 2 11 11 C 1.53000 * 109.54053 * 303.06084 * 9 3 2 12 12 N 1.46508 * 109.47123 * 184.55632 * 11 9 3 13 13 C 1.34770 * 119.99885 * 179.97438 * 12 11 9 14 14 O 1.21593 * 120.00522 * 359.97438 * 13 12 11 15 15 C 1.47642 * 120.00137 * 179.97438 * 13 12 11 16 16 C 1.40006 * 119.90106 * 180.02562 * 15 13 12 17 17 C 1.36322 * 120.11163 * 179.97438 * 16 15 13 18 18 C 1.40881 * 119.88887 * 359.97438 * 17 16 15 19 19 C 1.41108 * 120.10470 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99764 * 335.47662 * 19 18 17 21 21 C 1.40228 * 120.00106 * 155.47291 * 19 18 17 22 22 N 1.30645 * 119.99872 * 342.27683 * 21 19 18 23 23 Si 1.86795 * 120.00027 * 162.28277 * 21 19 18 24 24 H 1.48504 * 109.47315 * 180.02562 * 23 21 19 25 25 H 1.48499 * 109.46967 * 299.99752 * 23 21 19 26 26 H 1.48504 * 109.47445 * 59.99714 * 23 21 19 27 27 C 1.40891 * 119.79318 * 0.25813 * 18 17 16 28 28 C 1.36317 * 119.89470 * 359.50287 * 27 18 17 29 29 H 1.09001 * 109.47027 * 299.99669 * 1 2 3 30 30 H 1.09000 * 109.47146 * 59.99972 * 1 2 3 31 31 H 1.08996 * 109.46897 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47726 * 177.71525 * 5 3 2 33 33 H 1.09003 * 109.48785 * 57.69662 * 5 3 2 34 34 H 1.08998 * 109.48217 * 301.17770 * 7 6 5 35 35 H 1.09005 * 109.49115 * 181.14739 * 7 6 5 36 36 H 1.09004 * 109.52448 * 182.48257 * 8 7 6 37 37 H 1.08998 * 109.57480 * 62.32545 * 8 7 6 38 38 H 1.08997 * 109.47797 * 64.54999 * 11 9 3 39 39 H 1.09001 * 109.47069 * 304.55265 * 11 9 3 40 40 H 0.96993 * 119.99818 * 359.97438 * 12 11 9 41 41 H 1.08006 * 119.94653 * 359.97438 * 16 15 13 42 42 H 1.07999 * 120.05174 * 179.97438 * 17 16 15 43 43 H 0.96998 * 120.00158 * 179.97438 * 22 21 19 44 44 H 1.08007 * 120.05140 * 179.72192 * 27 18 17 45 45 H 1.07996 * 119.94951 * 180.21275 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 2.0014 0.5110 5 6 2.2256 1.7696 -1.4429 6 8 3.1432 0.8883 -2.0934 7 6 4.4380 0.8453 -1.4903 8 6 4.3116 0.3440 -0.0493 9 6 3.3607 1.2646 0.7218 10 1 3.7821 2.2688 0.7668 11 6 3.1664 0.7268 2.1409 12 7 4.4381 0.7902 2.8655 13 6 4.5075 0.3668 4.1431 14 8 3.5146 -0.0673 4.6946 15 6 5.7892 0.4301 4.8732 16 6 5.8590 -0.0107 6.2002 17 6 7.0403 0.0453 6.8783 18 6 8.1923 0.5473 6.2413 19 6 9.4173 0.6079 6.9390 20 1 9.4223 0.6593 8.0177 21 6 10.6281 0.6013 6.2317 22 7 10.6567 0.1979 4.9894 23 14 12.2001 1.1690 7.0657 24 1 13.3323 1.0668 6.1102 25 1 12.0472 2.5803 7.5019 26 1 12.4706 0.3121 8.2480 27 6 8.1160 0.9944 4.9074 28 6 6.9314 0.9299 4.2359 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.6312 2.7813 -1.4426 33 1 1.2737 1.7598 -1.9739 34 1 4.8726 1.8449 -1.4906 35 1 5.0802 0.1695 -2.0552 36 1 5.2923 0.3522 0.4266 37 1 3.9153 -0.6714 -0.0493 38 1 2.8259 -0.3076 2.0942 39 1 2.4221 1.3311 2.6597 40 1 5.2301 1.1368 2.4258 41 1 4.9755 -0.3959 6.6876 42 1 7.0930 -0.2947 7.9020 43 1 11.4942 0.1937 4.5000 44 1 8.9955 1.3843 4.4164 45 1 6.8727 1.2692 3.2123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452647876.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:31 Heat of formation + Delta-G solvation = -139.548533 kcal Electronic energy + Delta-G solvation = -26511.200216 eV Core-core repulsion = 22685.084644 eV Total energy + Delta-G solvation = -3826.115572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.20862 -40.47768 -38.89910 -37.93883 -36.54113 -35.66745 -33.78475 -31.95790 -31.48418 -31.29332 -28.78786 -27.47595 -27.27344 -24.44290 -24.24635 -23.19963 -22.68058 -21.37472 -20.91185 -19.36445 -18.58040 -17.64770 -17.36608 -17.35086 -16.98246 -16.55161 -16.43298 -15.95689 -15.83158 -15.74409 -15.31405 -15.01524 -14.89709 -14.53889 -14.44251 -14.12307 -13.85753 -13.66922 -13.41762 -13.23636 -13.17986 -12.92423 -12.84652 -12.62949 -12.35956 -12.25904 -12.03418 -11.78977 -11.70091 -11.38887 -11.35542 -11.11696 -11.01506 -10.73751 -10.11597 -10.03062 -9.57233 -9.40255 -8.79101 -6.48125 0.44568 1.15171 1.39501 1.44923 1.52596 2.12568 2.18316 2.35472 2.73807 2.79004 3.07487 3.60988 3.66883 3.69555 3.76641 3.91960 4.24563 4.28866 4.30357 4.31998 4.39644 4.44409 4.49410 4.51137 4.57228 4.64342 4.72987 4.74944 4.87347 4.88482 4.92148 4.97292 5.03601 5.07591 5.16125 5.30275 5.31834 5.55021 5.59662 5.82384 5.94592 5.99459 6.13264 6.22976 6.39893 6.53901 6.70746 6.77318 6.89227 7.44097 8.16020 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020945 B = 0.002616 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.492811 B =10700.158053 C =11807.296613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.059 3.941 4 H 0.089 0.911 5 C 0.041 3.959 6 O -0.395 6.395 7 C 0.062 3.938 8 C -0.146 4.146 9 C -0.091 4.091 10 H 0.112 0.888 11 C 0.139 3.861 12 N -0.722 5.722 13 C 0.570 3.430 14 O -0.609 6.609 15 C -0.294 4.294 16 C -0.033 4.033 17 C -0.254 4.254 18 C 0.102 3.898 19 C -0.474 4.474 20 H 0.085 0.915 21 C 0.039 3.961 22 N -0.797 5.797 23 Si 0.987 3.013 24 H -0.263 1.263 25 H -0.258 1.258 26 H -0.260 1.260 27 C -0.197 4.197 28 C -0.052 4.052 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.407 0.593 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.297 0.703 44 H 0.116 0.884 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.364 6.351 -14.275 18.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C 0.001 3.999 4 H 0.107 0.893 5 C -0.036 4.036 6 O -0.314 6.314 7 C -0.015 4.015 8 C -0.184 4.184 9 C -0.110 4.110 10 H 0.130 0.870 11 C 0.015 3.985 12 N -0.374 5.374 13 C 0.364 3.636 14 O -0.493 6.493 15 C -0.299 4.299 16 C -0.053 4.053 17 C -0.274 4.274 18 C 0.099 3.901 19 C -0.501 4.501 20 H 0.103 0.897 21 C -0.181 4.181 22 N -0.420 5.420 23 Si 0.807 3.193 24 H -0.187 1.187 25 H -0.182 1.182 26 H -0.184 1.184 27 C -0.217 4.217 28 C -0.071 4.071 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.245 0.755 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.109 0.891 44 H 0.133 0.867 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.860 5.716 -14.310 18.294 hybrid contribution 0.713 0.207 0.695 1.017 sum -9.147 5.923 -13.615 17.439 Atomic orbital electron populations 1.22942 0.80032 1.03464 1.00711 1.87975 1.20845 1.27644 1.95083 1.22853 0.94364 0.85937 0.96757 0.89276 1.23201 0.94676 0.93570 0.92137 1.87925 1.23054 1.66254 1.54184 1.22679 0.84523 1.01830 0.92453 1.22157 0.99809 0.99750 0.96694 1.21565 0.95885 1.01232 0.92324 0.87046 1.21155 0.85342 1.00779 0.91220 1.45732 1.13240 1.66023 1.12418 1.18434 0.87984 0.75668 0.81562 1.90615 1.39072 1.50201 1.69458 1.19180 0.93395 1.20676 0.96619 1.20504 0.96402 0.94878 0.93481 1.20854 0.94092 1.11675 1.00756 1.18134 0.92835 0.86347 0.92830 1.20095 0.91021 1.43391 0.95600 0.89708 1.26917 1.04456 0.91474 0.95223 1.69750 1.31169 1.29824 1.11290 0.85162 0.75159 0.79949 0.79032 1.18723 1.18198 1.18388 1.21023 0.97224 1.06955 0.96453 1.20715 0.91753 0.96351 0.98261 0.93536 0.92522 0.89460 0.90075 0.87690 0.91206 0.88209 0.90354 0.92384 0.93300 0.92560 0.75509 0.88154 0.87878 0.89122 0.86667 0.85716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.82 113.37 1.23 1.62 16 2 O -0.40 -8.82 9.07 -141.81 -1.29 -10.11 16 3 C 0.06 1.04 2.43 30.69 0.07 1.11 16 4 H 0.09 1.23 7.79 -2.39 -0.02 1.21 16 5 C 0.04 0.61 6.49 72.01 0.47 1.08 16 6 O -0.40 -8.13 10.69 -141.81 -1.52 -9.64 16 7 C 0.06 1.07 6.84 72.01 0.49 1.56 16 8 C -0.15 -3.00 5.10 30.69 0.16 -2.85 16 9 C -0.09 -1.79 2.15 -10.67 -0.02 -1.81 16 10 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 11 C 0.14 3.84 4.83 86.38 0.42 4.26 16 12 N -0.72 -23.13 5.26 -466.14 -2.45 -25.58 16 13 C 0.57 24.32 7.76 86.73 0.67 24.99 16 14 O -0.61 -29.83 16.32 -4.01 -0.07 -29.89 16 15 C -0.29 -13.48 5.89 -19.93 -0.12 -13.60 16 16 C -0.03 -1.62 9.52 22.25 0.21 -1.41 16 17 C -0.25 -12.71 9.73 22.47 0.22 -12.49 16 18 C 0.10 5.27 5.57 -21.28 -0.12 5.15 16 19 C -0.47 -23.82 9.04 23.46 0.21 -23.61 16 20 H 0.08 4.09 7.91 -2.91 -0.02 4.06 16 21 C 0.04 1.77 5.14 85.35 0.44 2.21 16 22 N -0.80 -37.62 10.95 21.87 0.24 -37.38 16 23 Si 0.99 34.38 29.60 68.60 2.03 36.41 16 24 H -0.26 -8.56 7.11 99.48 0.71 -7.85 16 25 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 26 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 27 C -0.20 -9.62 8.63 22.47 0.19 -9.43 16 28 C -0.05 -2.24 9.47 22.25 0.21 -2.03 16 29 H 0.05 0.67 8.09 -2.39 -0.02 0.66 16 30 H 0.06 0.68 7.86 -2.39 -0.02 0.66 16 31 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.11 1.30 7.86 -2.39 -0.02 1.28 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 35 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.08 1.55 7.28 -2.38 -0.02 1.54 16 37 H 0.06 1.49 7.83 -2.39 -0.02 1.47 16 38 H 0.05 1.61 7.76 -2.39 -0.02 1.59 16 39 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.41 11.04 5.68 -92.71 -0.53 10.51 16 41 H 0.10 4.78 7.63 -2.91 -0.02 4.76 16 42 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 43 H 0.30 12.47 8.29 -92.71 -0.77 11.70 16 44 H 0.12 5.66 6.16 -2.91 -0.02 5.64 16 45 H 0.13 4.30 6.37 -2.91 -0.02 4.28 16 Total: -1.00 -65.64 366.07 2.16 -63.48 By element: Atomic # 1 Polarization: 37.47 SS G_CDS: 0.47 Total: 37.95 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: 4.74 Total: -25.24 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: -2.21 Total: -62.96 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: -2.87 Total: -49.64 kcal Atomic # 14 Polarization: 34.38 SS G_CDS: 2.03 Total: 36.41 kcal Total: -65.64 2.16 -63.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452647876.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.067 kcal (2) G-P(sol) polarization free energy of solvation -65.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds