Wall clock time and date at job start Tue Mar 31 2020 12:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99586 * 2 1 4 4 H 1.09000 * 109.52374 * 29.87821 * 3 2 1 5 5 C 1.53093 * 109.52486 * 269.68638 * 3 2 1 6 6 O 1.42900 * 109.41244 * 182.48691 * 5 3 2 7 7 C 1.42900 * 114.10064 * 61.16184 * 6 5 3 8 8 C 1.53097 * 109.41374 * 298.83693 * 7 6 5 9 9 C 1.53172 * 109.16128 * 57.60697 * 8 7 6 10 10 H 1.08996 * 109.62027 * 62.93353 * 9 8 7 11 11 C 1.53002 * 109.54422 * 183.15518 * 9 8 7 12 12 N 1.46496 * 109.47069 * 294.55473 * 11 9 8 13 13 C 1.34779 * 120.00150 * 179.97438 * 12 11 9 14 14 O 1.21581 * 119.99647 * 0.02562 * 13 12 11 15 15 C 1.47640 * 120.00088 * 180.02562 * 13 12 11 16 16 C 1.40017 * 119.89597 * 0.29035 * 15 13 12 17 17 C 1.36315 * 120.10489 * 180.30229 * 16 15 13 18 18 C 1.40885 * 119.89334 * 359.43599 * 17 16 15 19 19 C 1.41111 * 120.10536 * 180.30167 * 18 17 16 20 20 H 1.07996 * 120.00198 * 154.52656 * 19 18 17 21 21 C 1.40227 * 119.99546 * 334.52369 * 19 18 17 22 22 N 1.30644 * 120.00033 * 343.06447 * 21 19 18 23 23 Si 1.86799 * 119.99848 * 163.06669 * 21 19 18 24 24 H 1.48503 * 109.47357 * 59.99742 * 23 21 19 25 25 H 1.48498 * 109.47368 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.47336 * 300.00015 * 23 21 19 27 27 C 1.40888 * 119.79168 * 0.27218 * 18 17 16 28 28 C 1.36313 * 119.89186 * 0.02562 * 27 18 17 29 29 H 1.08998 * 109.47234 * 60.00474 * 1 2 3 30 30 H 1.09009 * 109.46869 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47642 * 299.99516 * 1 2 3 32 32 H 1.08995 * 109.47733 * 302.46865 * 5 3 2 33 33 H 1.08996 * 109.47953 * 62.49342 * 5 3 2 34 34 H 1.08993 * 109.48207 * 58.81958 * 7 6 5 35 35 H 1.08997 * 109.48385 * 178.84516 * 7 6 5 36 36 H 1.09002 * 109.51923 * 297.70934 * 8 7 6 37 37 H 1.08989 * 109.52418 * 177.51664 * 8 7 6 38 38 H 1.08999 * 109.46955 * 174.55707 * 11 9 8 39 39 H 1.08994 * 109.47252 * 54.55742 * 11 9 8 40 40 H 0.97001 * 119.99865 * 0.02562 * 12 11 9 41 41 H 1.08000 * 119.95039 * 0.03357 * 16 15 13 42 42 H 1.08004 * 120.05046 * 179.70310 * 17 16 15 43 43 H 0.97005 * 119.99903 * 179.97438 * 22 21 19 44 44 H 1.08007 * 120.05374 * 180.02562 * 27 18 17 45 45 H 1.07999 * 119.94443 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3445 2.0005 0.5118 5 6 2.2254 1.7697 -1.4429 6 8 2.8595 3.0503 -1.4402 7 6 4.1470 3.0627 -0.8202 8 6 4.0089 2.6505 0.6477 9 6 3.3606 1.2647 0.7219 10 1 4.0085 0.5313 0.2419 11 6 3.1464 0.8775 2.1866 12 7 4.4456 0.7223 2.8456 13 6 4.5040 0.3819 4.1483 14 8 3.4785 0.2032 4.7765 15 6 5.8133 0.2260 4.8126 16 6 6.9928 0.4383 4.0887 17 6 8.2041 0.2896 4.6961 18 6 8.2677 -0.0668 6.0577 19 6 9.5190 -0.2158 6.6926 20 1 9.6024 -0.0789 7.7606 21 6 10.6543 -0.5415 5.9367 22 7 10.5193 -1.0270 4.7314 23 14 12.3597 -0.2814 6.6533 24 1 12.5065 -1.0921 7.8888 25 1 13.3825 -0.7011 5.6619 26 1 12.5458 1.1555 6.9791 27 6 7.0780 -0.2734 6.7835 28 6 5.8715 -0.1283 6.1659 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 2.8580 1.0520 -1.9650 33 1 1.2628 1.8416 -1.9490 34 1 4.8047 2.3619 -1.3343 35 1 4.5687 4.0661 -0.8780 36 1 3.3839 3.3735 1.1718 37 1 4.9949 2.6166 1.1108 38 1 2.5986 -0.0634 2.2373 39 1 2.5752 1.6581 2.6889 40 1 5.2637 0.8653 2.3445 41 1 6.9430 0.7162 3.0462 42 1 9.1134 0.4489 4.1356 43 1 11.3047 -1.2520 4.2083 44 1 7.1218 -0.5463 7.8276 45 1 4.9590 -0.2868 6.7214 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452647877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:37 Heat of formation + Delta-G solvation = -123.379281 kcal Electronic energy + Delta-G solvation = -26401.189090 eV Core-core repulsion = 22575.774670 eV Total energy + Delta-G solvation = -3825.414420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.25565 -38.94852 -37.54347 -37.13902 -35.32356 -33.86730 -32.58425 -30.72141 -30.20798 -29.45154 -27.54092 -26.87646 -25.68559 -23.43415 -23.09004 -21.65972 -20.91850 -20.52686 -19.56657 -17.53741 -17.28768 -16.91738 -16.65599 -15.92030 -15.69998 -15.57100 -15.40859 -14.84104 -14.71558 -14.09214 -14.02983 -13.77707 -13.48723 -13.30448 -13.19758 -12.72999 -12.64112 -12.53854 -12.10813 -11.93575 -11.89666 -11.62418 -11.39645 -11.27602 -11.18087 -11.03956 -10.98258 -10.70190 -10.62393 -10.33783 -10.06264 -9.56253 -9.49988 -9.36305 -8.95426 -8.57060 -7.72872 -7.53960 -7.03324 -4.61084 2.23459 2.92246 2.93726 2.97727 3.02680 3.23569 3.67016 3.73422 3.82733 3.88145 4.41952 4.45049 4.52946 4.58464 4.73460 4.86264 5.01128 5.04391 5.11810 5.23249 5.30881 5.39066 5.41974 5.45993 5.56059 5.60162 5.69062 5.79920 5.92843 6.02452 6.05051 6.20633 6.31515 6.68947 6.76106 6.82341 6.93588 7.00148 7.05537 7.12800 7.42934 7.64572 7.78219 7.85068 8.06674 8.24357 8.39111 8.62528 8.74577 9.08864 9.88809 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019474 B = 0.002601 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.498403 B =10760.854842 C =11702.608718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.065 3.935 4 H 0.073 0.927 5 C 0.043 3.957 6 O -0.378 6.378 7 C 0.057 3.943 8 C -0.151 4.151 9 C -0.100 4.100 10 H 0.088 0.912 11 C 0.134 3.866 12 N -0.741 5.741 13 C 0.571 3.429 14 O -0.576 6.576 15 C -0.283 4.283 16 C -0.063 4.063 17 C -0.177 4.177 18 C 0.129 3.871 19 C -0.444 4.444 20 H 0.084 0.916 21 C 0.074 3.926 22 N -0.773 5.773 23 Si 0.914 3.086 24 H -0.262 1.262 25 H -0.276 1.276 26 H -0.261 1.261 27 C -0.238 4.238 28 C -0.022 4.022 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.396 0.604 41 H 0.088 0.912 42 H 0.120 0.880 43 H 0.287 0.713 44 H 0.098 0.902 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.659 5.403 -12.689 16.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.006 3.994 4 H 0.091 0.909 5 C -0.034 4.034 6 O -0.297 6.297 7 C -0.020 4.020 8 C -0.188 4.188 9 C -0.119 4.119 10 H 0.106 0.894 11 C 0.010 3.990 12 N -0.394 5.394 13 C 0.366 3.634 14 O -0.458 6.458 15 C -0.288 4.288 16 C -0.082 4.082 17 C -0.196 4.196 18 C 0.126 3.874 19 C -0.472 4.472 20 H 0.102 0.898 21 C -0.147 4.147 22 N -0.397 5.397 23 Si 0.738 3.262 24 H -0.187 1.187 25 H -0.201 1.201 26 H -0.185 1.185 27 C -0.258 4.258 28 C -0.041 4.041 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.231 0.769 41 H 0.106 0.894 42 H 0.138 0.862 43 H 0.098 0.902 44 H 0.116 0.884 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.234 5.167 -12.541 16.991 hybrid contribution 1.099 -0.011 0.045 1.100 sum -9.135 5.156 -12.496 16.314 Atomic orbital electron populations 1.22844 0.80817 1.03040 1.00064 1.87953 1.19860 1.26691 1.94933 1.22717 0.95041 0.85469 0.96193 0.90910 1.23016 0.98625 0.85764 0.96036 1.87947 1.32551 1.29988 1.79213 1.22684 0.84715 1.02592 0.91964 1.22313 1.02622 0.96187 0.97715 1.21549 0.96011 0.98034 0.96263 0.89417 1.21108 0.86485 1.01591 0.89856 1.45888 1.08097 1.73773 1.11677 1.18578 0.89809 0.74596 0.80401 1.90630 1.36829 1.53353 1.64965 1.18909 0.90595 1.23489 0.95773 1.20459 0.92806 0.98312 0.96651 1.20970 0.96193 1.06150 0.96320 1.17781 0.92327 0.85399 0.91917 1.19813 0.91898 1.39466 0.95986 0.89766 1.26090 1.02133 0.92027 0.94431 1.69732 1.33266 1.26841 1.09839 0.86259 0.79855 0.80292 0.79838 1.18671 1.20063 1.18489 1.20729 0.92297 1.13098 0.99674 1.20362 0.96803 0.94123 0.92857 0.94091 0.89379 0.93656 0.92126 0.88817 0.92698 0.88324 0.90436 0.89621 0.91156 0.92327 0.76903 0.89434 0.86209 0.90201 0.88378 0.88123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.82 101.05 1.09 1.33 16 2 O -0.38 -4.18 9.74 -35.23 -0.34 -4.52 16 3 C 0.06 0.66 2.21 -26.59 -0.06 0.60 16 4 H 0.07 0.72 7.79 -51.93 -0.40 0.32 16 5 C 0.04 0.39 6.47 37.21 0.24 0.63 16 6 O -0.38 -3.91 10.76 -35.23 -0.38 -4.29 16 7 C 0.06 0.50 6.84 37.21 0.25 0.76 16 8 C -0.15 -1.46 5.26 -26.59 -0.14 -1.60 16 9 C -0.10 -1.10 2.03 -90.44 -0.18 -1.29 16 10 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 11 C 0.13 1.93 5.01 -4.04 -0.02 1.91 16 12 N -0.74 -12.39 5.27 -61.32 -0.32 -12.72 16 13 C 0.57 12.28 7.76 -12.42 -0.10 12.18 16 14 O -0.58 -13.95 16.32 5.29 0.09 -13.87 16 15 C -0.28 -6.49 5.89 -104.73 -0.62 -7.10 16 16 C -0.06 -1.39 9.47 -39.61 -0.38 -1.76 16 17 C -0.18 -4.30 8.63 -39.27 -0.34 -4.64 16 18 C 0.13 3.28 5.57 -106.80 -0.59 2.68 16 19 C -0.44 -11.01 9.05 -37.75 -0.34 -11.35 16 20 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 21 C 0.07 1.72 5.15 -17.31 -0.09 1.64 16 22 N -0.77 -18.45 10.95 55.56 0.61 -17.84 16 23 Si 0.91 17.20 29.59 -169.99 -5.03 12.17 16 24 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 25 H -0.28 -5.04 7.11 56.52 0.40 -4.64 16 26 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 27 C -0.24 -5.79 9.73 -39.27 -0.38 -6.17 16 28 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 29 H 0.04 0.26 7.96 -51.93 -0.41 -0.15 16 30 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 31 H 0.04 0.36 8.09 -51.93 -0.42 -0.06 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.73 7.96 -51.93 -0.41 0.32 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.82 7.30 -51.94 -0.38 0.44 16 38 H 0.07 1.13 7.65 -51.93 -0.40 0.74 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.40 5.85 5.71 -40.82 -0.23 5.61 16 41 H 0.09 1.61 6.37 -52.49 -0.33 1.28 16 42 H 0.12 2.94 6.18 -52.48 -0.32 2.61 16 43 H 0.29 6.17 8.29 -40.82 -0.34 5.83 16 44 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 45 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 LS Contribution 367.26 15.07 5.53 5.53 Total: -1.00 -29.47 367.26 -8.52 -37.99 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -6.65 Total: 10.64 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -2.03 Total: -13.09 kcal Atomic # 7 Polarization: -30.85 SS G_CDS: 0.29 Total: -30.56 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.64 Total: -22.68 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.47 -8.52 -37.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452647877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.391 kcal (2) G-P(sol) polarization free energy of solvation -29.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds