Wall clock time and date at job start Tue Mar 31 2020 12:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99586 * 2 1 4 4 H 1.09000 * 109.52374 * 29.87821 * 3 2 1 5 5 C 1.53093 * 109.52486 * 269.68638 * 3 2 1 6 6 O 1.42900 * 109.41244 * 182.48691 * 5 3 2 7 7 C 1.42900 * 114.10064 * 61.16184 * 6 5 3 8 8 C 1.53097 * 109.41374 * 298.83693 * 7 6 5 9 9 C 1.53172 * 109.16128 * 57.60697 * 8 7 6 10 10 H 1.08996 * 109.62027 * 62.93353 * 9 8 7 11 11 C 1.53002 * 109.54422 * 183.15518 * 9 8 7 12 12 N 1.46496 * 109.47069 * 294.55473 * 11 9 8 13 13 C 1.34779 * 120.00150 * 179.97438 * 12 11 9 14 14 O 1.21581 * 119.99647 * 0.02562 * 13 12 11 15 15 C 1.47640 * 120.00088 * 180.02562 * 13 12 11 16 16 C 1.40017 * 119.89597 * 0.29035 * 15 13 12 17 17 C 1.36315 * 120.10489 * 180.30229 * 16 15 13 18 18 C 1.40885 * 119.89334 * 359.43599 * 17 16 15 19 19 C 1.41111 * 120.10536 * 180.30167 * 18 17 16 20 20 H 1.07996 * 120.00198 * 154.52656 * 19 18 17 21 21 C 1.40227 * 119.99546 * 334.52369 * 19 18 17 22 22 N 1.30644 * 120.00033 * 343.06447 * 21 19 18 23 23 Si 1.86799 * 119.99848 * 163.06669 * 21 19 18 24 24 H 1.48503 * 109.47357 * 59.99742 * 23 21 19 25 25 H 1.48498 * 109.47368 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.47336 * 300.00015 * 23 21 19 27 27 C 1.40888 * 119.79168 * 0.27218 * 18 17 16 28 28 C 1.36313 * 119.89186 * 0.02562 * 27 18 17 29 29 H 1.08998 * 109.47234 * 60.00474 * 1 2 3 30 30 H 1.09009 * 109.46869 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47642 * 299.99516 * 1 2 3 32 32 H 1.08995 * 109.47733 * 302.46865 * 5 3 2 33 33 H 1.08996 * 109.47953 * 62.49342 * 5 3 2 34 34 H 1.08993 * 109.48207 * 58.81958 * 7 6 5 35 35 H 1.08997 * 109.48385 * 178.84516 * 7 6 5 36 36 H 1.09002 * 109.51923 * 297.70934 * 8 7 6 37 37 H 1.08989 * 109.52418 * 177.51664 * 8 7 6 38 38 H 1.08999 * 109.46955 * 174.55707 * 11 9 8 39 39 H 1.08994 * 109.47252 * 54.55742 * 11 9 8 40 40 H 0.97001 * 119.99865 * 0.02562 * 12 11 9 41 41 H 1.08000 * 119.95039 * 0.03357 * 16 15 13 42 42 H 1.08004 * 120.05046 * 179.70310 * 17 16 15 43 43 H 0.97005 * 119.99903 * 179.97438 * 22 21 19 44 44 H 1.08007 * 120.05374 * 180.02562 * 27 18 17 45 45 H 1.07999 * 119.94443 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3445 2.0005 0.5118 5 6 2.2254 1.7697 -1.4429 6 8 2.8595 3.0503 -1.4402 7 6 4.1470 3.0627 -0.8202 8 6 4.0089 2.6505 0.6477 9 6 3.3606 1.2647 0.7219 10 1 4.0085 0.5313 0.2419 11 6 3.1464 0.8775 2.1866 12 7 4.4456 0.7223 2.8456 13 6 4.5040 0.3819 4.1483 14 8 3.4785 0.2032 4.7765 15 6 5.8133 0.2260 4.8126 16 6 6.9928 0.4383 4.0887 17 6 8.2041 0.2896 4.6961 18 6 8.2677 -0.0668 6.0577 19 6 9.5190 -0.2158 6.6926 20 1 9.6024 -0.0789 7.7606 21 6 10.6543 -0.5415 5.9367 22 7 10.5193 -1.0270 4.7314 23 14 12.3597 -0.2814 6.6533 24 1 12.5065 -1.0921 7.8888 25 1 13.3825 -0.7011 5.6619 26 1 12.5458 1.1555 6.9791 27 6 7.0780 -0.2734 6.7835 28 6 5.8715 -0.1283 6.1659 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 2.8580 1.0520 -1.9650 33 1 1.2628 1.8416 -1.9490 34 1 4.8047 2.3619 -1.3343 35 1 4.5687 4.0661 -0.8780 36 1 3.3839 3.3735 1.1718 37 1 4.9949 2.6166 1.1108 38 1 2.5986 -0.0634 2.2373 39 1 2.5752 1.6581 2.6889 40 1 5.2637 0.8653 2.3445 41 1 6.9430 0.7162 3.0462 42 1 9.1134 0.4489 4.1356 43 1 11.3047 -1.2520 4.2083 44 1 7.1218 -0.5463 7.8276 45 1 4.9590 -0.2868 6.7214 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452647877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:36 Heat of formation + Delta-G solvation = -141.551057 kcal Electronic energy + Delta-G solvation = -26401.977077 eV Core-core repulsion = 22575.774670 eV Total energy + Delta-G solvation = -3826.202408 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.22021 -40.48129 -38.90522 -38.29267 -36.57491 -35.66381 -33.84131 -31.96821 -31.42116 -31.29837 -28.81136 -27.54006 -27.29187 -24.33430 -24.17647 -23.22330 -22.69497 -21.52038 -21.09877 -19.36419 -18.60472 -17.89647 -17.52254 -17.27576 -16.89130 -16.66377 -16.44197 -15.92222 -15.89935 -15.74573 -15.30068 -15.07944 -14.96164 -14.44022 -14.39185 -14.16047 -13.87546 -13.71174 -13.58199 -13.44231 -13.20775 -12.84672 -12.74826 -12.61913 -12.36368 -12.32246 -12.12730 -11.83235 -11.77552 -11.47627 -11.36754 -11.12421 -11.06030 -10.75480 -10.23522 -10.07702 -9.57540 -9.39823 -8.78421 -6.48429 0.43914 1.14845 1.39618 1.44801 1.52600 2.12287 2.18340 2.33381 2.52921 2.78983 3.06279 3.50497 3.63266 3.68372 3.73388 3.96577 4.09477 4.22410 4.25610 4.31414 4.34872 4.44182 4.44367 4.48628 4.55061 4.68820 4.70736 4.76619 4.81105 4.85375 4.92001 4.96342 5.03063 5.03976 5.15677 5.18498 5.29946 5.53421 5.59428 5.81828 5.94087 5.98415 5.99254 6.22935 6.28791 6.53883 6.69274 6.77349 6.88914 7.42690 8.16689 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019474 B = 0.002601 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.498403 B =10760.854842 C =11702.608718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.398 6.398 3 C 0.066 3.934 4 H 0.073 0.927 5 C 0.046 3.954 6 O -0.391 6.391 7 C 0.057 3.943 8 C -0.147 4.147 9 C -0.092 4.092 10 H 0.089 0.911 11 C 0.137 3.863 12 N -0.721 5.721 13 C 0.570 3.430 14 O -0.608 6.608 15 C -0.293 4.293 16 C -0.053 4.053 17 C -0.196 4.196 18 C 0.102 3.898 19 C -0.475 4.475 20 H 0.085 0.915 21 C 0.038 3.962 22 N -0.799 5.799 23 Si 0.987 3.013 24 H -0.260 1.260 25 H -0.264 1.264 26 H -0.258 1.258 27 C -0.253 4.253 28 C -0.034 4.034 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.114 0.886 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.407 0.593 41 H 0.125 0.875 42 H 0.115 0.885 43 H 0.297 0.703 44 H 0.104 0.896 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.944 6.112 -14.391 18.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.317 6.317 3 C 0.008 3.992 4 H 0.091 0.909 5 C -0.031 4.031 6 O -0.310 6.310 7 C -0.020 4.020 8 C -0.185 4.185 9 C -0.111 4.111 10 H 0.108 0.892 11 C 0.013 3.987 12 N -0.374 5.374 13 C 0.364 3.636 14 O -0.493 6.493 15 C -0.298 4.298 16 C -0.072 4.072 17 C -0.215 4.215 18 C 0.099 3.901 19 C -0.502 4.502 20 H 0.103 0.897 21 C -0.181 4.181 22 N -0.422 5.422 23 Si 0.807 3.193 24 H -0.184 1.184 25 H -0.188 1.188 26 H -0.182 1.182 27 C -0.273 4.273 28 C -0.053 4.053 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.127 0.873 34 H 0.082 0.918 35 H 0.132 0.868 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.245 0.755 41 H 0.143 0.857 42 H 0.133 0.867 43 H 0.108 0.892 44 H 0.122 0.878 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.529 5.884 -14.288 18.154 hybrid contribution 0.776 -0.261 0.535 0.978 sum -8.753 5.623 -13.754 17.245 Atomic orbital electron populations 1.23014 0.79443 1.03923 1.00963 1.87918 1.21480 1.27215 1.95103 1.22714 0.94336 0.85319 0.96877 0.90852 1.23040 0.99425 0.85427 0.95200 1.87939 1.33204 1.30541 1.79302 1.22784 0.84418 1.03774 0.90976 1.22299 1.02468 0.95043 0.98715 1.21509 0.97074 0.98915 0.93636 0.89250 1.21180 0.84917 1.00660 0.91897 1.45717 1.09741 1.71749 1.10171 1.18432 0.88724 0.74720 0.81722 1.90611 1.37542 1.54992 1.66115 1.19177 0.91788 1.23066 0.95730 1.20718 0.91570 0.96645 0.98217 1.21018 0.96855 1.07440 0.96205 1.18137 0.92994 0.86128 0.92862 1.20091 0.92811 1.40813 0.96457 0.89698 1.26911 1.05554 0.90985 0.94629 1.69751 1.34960 1.26644 1.10856 0.85161 0.74813 0.80146 0.79170 1.18401 1.18762 1.18180 1.20866 0.92444 1.13806 1.00151 1.20503 0.96640 0.94445 0.93689 0.92165 0.88615 0.93769 0.91877 0.87346 0.91772 0.86843 0.90815 0.89303 0.92838 0.92750 0.75518 0.85745 0.86684 0.89163 0.87832 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.82 113.37 1.23 1.56 16 2 O -0.40 -8.36 9.74 -148.98 -1.45 -9.81 16 3 C 0.07 1.24 2.21 30.69 0.07 1.31 16 4 H 0.07 1.35 7.79 -2.39 -0.02 1.33 16 5 C 0.05 0.75 6.47 72.01 0.47 1.21 16 6 O -0.39 -7.15 10.76 -148.98 -1.60 -8.76 16 7 C 0.06 0.85 6.84 72.01 0.49 1.35 16 8 C -0.15 -2.56 5.26 30.68 0.16 -2.40 16 9 C -0.09 -1.90 2.03 -10.67 -0.02 -1.92 16 10 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 11 C 0.14 3.85 5.01 86.38 0.43 4.28 16 12 N -0.72 -23.31 5.27 -466.18 -2.46 -25.76 16 13 C 0.57 24.35 7.76 86.73 0.67 25.02 16 14 O -0.61 -29.71 16.32 -3.97 -0.06 -29.77 16 15 C -0.29 -13.43 5.89 -19.93 -0.12 -13.54 16 16 C -0.05 -2.27 9.47 22.25 0.21 -2.06 16 17 C -0.20 -9.57 8.63 22.47 0.19 -9.37 16 18 C 0.10 5.28 5.57 -21.28 -0.12 5.17 16 19 C -0.47 -23.86 9.05 23.46 0.21 -23.65 16 20 H 0.08 4.09 7.90 -2.91 -0.02 4.07 16 21 C 0.04 1.76 5.15 85.35 0.44 2.20 16 22 N -0.80 -37.82 10.95 21.87 0.24 -37.58 16 23 Si 0.99 34.48 29.59 68.60 2.03 36.51 16 24 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 25 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 26 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 27 C -0.25 -12.63 9.73 22.47 0.22 -12.41 16 28 C -0.03 -1.63 9.52 22.25 0.21 -1.42 16 29 H 0.06 0.65 7.96 -2.39 -0.02 0.63 16 30 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.04 0.65 8.09 -2.39 -0.02 0.64 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.11 1.41 7.96 -2.39 -0.02 1.39 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.09 1.48 7.30 -2.39 -0.02 1.47 16 38 H 0.05 1.72 7.65 -2.39 -0.02 1.70 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.41 11.19 5.71 -92.71 -0.53 10.67 16 41 H 0.12 4.31 6.37 -2.91 -0.02 4.29 16 42 H 0.12 5.66 6.18 -2.91 -0.02 5.65 16 43 H 0.30 12.51 8.29 -92.70 -0.77 11.74 16 44 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 45 H 0.10 4.79 7.63 -2.91 -0.02 4.77 16 Total: -1.00 -63.70 367.26 1.91 -61.78 By element: Atomic # 1 Polarization: 37.60 SS G_CDS: 0.47 Total: 38.07 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: 4.75 Total: -24.68 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -2.22 Total: -63.34 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -3.12 Total: -48.34 kcal Atomic # 14 Polarization: 34.48 SS G_CDS: 2.03 Total: 36.51 kcal Total: -63.70 1.91 -61.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452647877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.768 kcal (2) G-P(sol) polarization free energy of solvation -63.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds