Wall clock time and date at job start Tue Mar 31 2020 12:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42907 * 113.99737 * 2 1 4 4 H 1.08994 * 109.57369 * 330.15542 * 3 2 1 5 5 C 1.53107 * 109.59502 * 90.27942 * 3 2 1 6 6 O 1.42903 * 109.48408 * 177.42331 * 5 3 2 7 7 C 1.42905 * 114.09558 * 298.88677 * 6 5 3 8 8 C 1.53092 * 109.41881 * 61.15921 * 7 6 5 9 9 C 1.53175 * 109.16127 * 302.39457 * 8 7 6 10 10 H 1.09004 * 109.54304 * 297.02198 * 9 8 7 11 11 C 1.52997 * 109.54260 * 176.84974 * 9 8 7 12 12 N 1.46497 * 109.47525 * 65.17134 * 11 9 8 13 13 C 1.34780 * 119.99844 * 180.02562 * 12 11 9 14 14 O 1.21540 * 120.00015 * 359.97438 * 13 12 11 15 15 C 1.47884 * 119.99680 * 180.02562 * 13 12 11 16 16 C 1.39931 * 120.02488 * 359.97438 * 15 13 12 17 17 C 1.38322 * 120.35518 * 180.25272 * 16 15 13 18 18 C 1.37754 * 120.41590 * 359.45216 * 17 16 15 19 19 C 1.40755 * 120.03735 * 0.54776 * 18 17 16 20 20 C 1.41438 * 120.17836 * 179.70439 * 19 18 17 21 21 H 1.08001 * 119.99753 * 334.97518 * 20 19 18 22 22 C 1.39935 * 119.99668 * 154.97273 * 20 19 18 23 23 N 1.30825 * 120.00465 * 342.58893 * 22 20 19 24 24 Si 1.86807 * 119.99686 * 162.58729 * 22 20 19 25 25 H 1.48493 * 109.47096 * 89.99995 * 24 22 20 26 26 H 1.48500 * 109.46870 * 210.00270 * 24 22 20 27 27 H 1.48505 * 109.47004 * 329.99835 * 24 22 20 28 28 C 1.38988 * 120.02592 * 179.97438 * 15 13 12 29 29 H 1.09006 * 109.46890 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47580 * 299.99351 * 1 2 3 31 31 H 1.09002 * 109.47374 * 60.00216 * 1 2 3 32 32 H 1.08994 * 109.40924 * 57.44100 * 5 3 2 33 33 H 1.09001 * 109.49068 * 297.45351 * 5 3 2 34 34 H 1.08999 * 109.47990 * 301.17451 * 7 6 5 35 35 H 1.09000 * 109.47888 * 181.14666 * 7 6 5 36 36 H 1.08996 * 109.52319 * 182.48402 * 8 7 6 37 37 H 1.09001 * 109.51674 * 62.29724 * 8 7 6 38 38 H 1.09006 * 109.47005 * 305.17039 * 11 9 8 39 39 H 1.09003 * 109.47286 * 185.17725 * 11 9 8 40 40 H 0.96994 * 119.99837 * 0.02562 * 12 11 9 41 41 H 1.07998 * 119.82069 * 359.97438 * 16 15 13 42 42 H 1.07998 * 119.79496 * 179.70408 * 17 16 15 43 43 H 1.07995 * 119.98357 * 180.25850 * 18 17 16 44 44 H 0.97000 * 119.99925 * 179.97438 * 23 22 20 45 45 H 1.08000 * 120.20511 * 0.04608 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 2.0014 -0.5111 5 6 2.2254 1.7718 1.4424 6 8 2.8613 3.0515 1.4398 7 6 4.1491 3.0618 0.8202 8 6 4.0109 2.6495 -0.6477 9 6 3.3605 1.2647 -0.7219 10 1 4.0085 0.5313 -0.2419 11 6 3.1465 0.8776 -2.1865 12 7 4.4456 0.7266 -2.8466 13 6 4.5039 0.3870 -4.1496 14 8 3.4788 0.2055 -4.7768 15 6 5.8153 0.2340 -4.8158 16 6 6.9958 0.4423 -4.0940 17 6 8.2260 0.3062 -4.7116 18 6 8.3038 -0.0468 -6.0409 19 6 7.1271 -0.2604 -6.7832 20 6 7.2034 -0.6168 -8.1498 21 1 8.0724 -0.3456 -8.7308 22 6 6.1528 -1.3208 -8.7488 23 7 5.2740 -1.9424 -8.0054 24 14 6.0054 -1.3732 -10.6103 25 1 6.7574 -2.5417 -11.1338 26 1 4.5750 -1.4944 -10.9903 27 1 6.5666 -0.1248 -11.1866 28 6 5.8762 -0.1167 -6.1593 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.8567 1.0532 1.9649 33 1 1.2627 1.8453 1.9483 34 1 4.8056 2.3600 1.3347 35 1 4.5722 4.0646 0.8779 36 1 4.9972 2.6140 -1.1104 37 1 3.3873 3.3735 -1.1721 38 1 2.5724 1.6568 -2.6881 39 1 2.6013 -0.0649 -2.2373 40 1 5.2636 0.8711 -2.3460 41 1 6.9461 0.7152 -3.0503 42 1 9.1314 0.4737 -4.1471 43 1 9.2680 -0.1552 -6.5150 44 1 4.5456 -2.4301 -8.4207 45 1 4.9676 -0.2777 -6.7206 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452660185.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:41 Heat of formation + Delta-G solvation = -139.824620 kcal Electronic energy + Delta-G solvation = -26596.033127 eV Core-core repulsion = 22769.905583 eV Total energy + Delta-G solvation = -3826.127544 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.27998 -40.54411 -38.82644 -38.29447 -36.65051 -35.60210 -33.86790 -31.95899 -31.41863 -31.27283 -28.53436 -27.55207 -27.14046 -24.75921 -24.18141 -23.26436 -22.72157 -21.53729 -21.06164 -19.54284 -18.11515 -17.89732 -17.48796 -17.17234 -16.84340 -16.64727 -16.47523 -16.36182 -15.95517 -15.84865 -15.28209 -15.09980 -14.97490 -14.42736 -14.38922 -14.26642 -14.12757 -13.68147 -13.45895 -13.44718 -12.96145 -12.78924 -12.72772 -12.54692 -12.32938 -12.20976 -12.13086 -11.93209 -11.80828 -11.52077 -11.47176 -11.06997 -11.05703 -10.83042 -10.25049 -10.15567 -9.46961 -9.38238 -8.66669 -6.38537 0.37518 1.00940 1.35846 1.46048 1.52178 2.08934 2.18394 2.20167 2.52456 2.78650 3.06753 3.48859 3.62065 3.69174 3.72876 3.94670 4.05107 4.09633 4.24488 4.33995 4.40493 4.43142 4.47267 4.53718 4.59420 4.68294 4.70666 4.75555 4.80020 4.84055 4.88996 4.97177 5.04168 5.08716 5.18714 5.19320 5.30960 5.42732 5.51994 5.86321 5.92237 5.98529 6.05224 6.28612 6.29039 6.50246 6.67709 6.87762 6.94639 7.29332 8.30110 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019883 B = 0.002793 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.909369 B =10021.777326 C =11088.401528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.397 6.397 3 C 0.064 3.936 4 H 0.071 0.929 5 C 0.047 3.953 6 O -0.392 6.392 7 C 0.057 3.943 8 C -0.148 4.148 9 C -0.090 4.090 10 H 0.094 0.906 11 C 0.133 3.867 12 N -0.709 5.709 13 C 0.559 3.441 14 O -0.591 6.591 15 C -0.139 4.139 16 C -0.196 4.196 17 C -0.095 4.095 18 C -0.217 4.217 19 C 0.067 3.933 20 C -0.498 4.498 21 H 0.084 0.916 22 C 0.028 3.972 23 N -0.826 5.826 24 Si 0.982 3.018 25 H -0.257 1.257 26 H -0.273 1.273 27 H -0.254 1.254 28 C -0.131 4.131 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.413 0.587 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.109 0.891 44 H 0.286 0.714 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.375 7.613 18.833 20.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.317 6.317 3 C 0.006 3.994 4 H 0.089 0.911 5 C -0.030 4.030 6 O -0.311 6.311 7 C -0.019 4.019 8 C -0.186 4.186 9 C -0.109 4.109 10 H 0.112 0.888 11 C 0.010 3.990 12 N -0.362 5.362 13 C 0.349 3.651 14 O -0.473 6.473 15 C -0.143 4.143 16 C -0.215 4.215 17 C -0.113 4.113 18 C -0.237 4.237 19 C 0.065 3.935 20 C -0.527 4.527 21 H 0.103 0.897 22 C -0.186 4.186 23 N -0.452 5.452 24 Si 0.803 3.197 25 H -0.181 1.181 26 H -0.198 1.198 27 H -0.178 1.178 28 C -0.151 4.151 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.125 0.875 34 H 0.085 0.915 35 H 0.132 0.868 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.251 0.749 41 H 0.156 0.844 42 H 0.158 0.842 43 H 0.127 0.873 44 H 0.096 0.904 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.293 7.334 18.504 20.596 hybrid contribution -0.213 -0.456 -1.150 1.255 sum -5.507 6.877 17.354 19.462 Atomic orbital electron populations 1.23005 0.79517 1.03883 1.00922 1.87915 1.21400 1.27247 1.95107 1.22734 0.94400 0.85273 0.97042 0.91091 1.23023 0.99427 0.85498 0.95021 1.87945 1.33270 1.30545 1.79319 1.22802 0.84375 1.03883 0.90876 1.22317 1.02589 0.94823 0.98842 1.21503 0.97107 0.99189 0.93114 0.88782 1.21246 0.84788 1.00734 0.92244 1.45687 1.10144 1.70837 1.09579 1.18778 0.88993 0.75120 0.82204 1.90669 1.37648 1.52753 1.66237 1.19775 0.92614 1.06772 0.95100 1.20851 0.90916 1.10233 0.99524 1.20934 0.97572 0.98569 0.94198 1.21431 0.96878 1.10114 0.95242 1.17948 0.91456 0.90136 0.93988 1.19861 1.04517 1.32804 0.95543 0.89745 1.26866 0.93732 0.92236 1.05789 1.69894 1.12377 1.22882 1.40057 0.85201 0.78402 0.80136 0.75991 1.18128 1.19812 1.17797 1.21430 0.98199 1.01733 0.93781 0.88689 0.92045 0.93962 0.91664 0.87495 0.91464 0.86776 0.88830 0.91053 0.92788 0.92937 0.74864 0.84427 0.84169 0.87306 0.90368 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.82 113.37 1.23 1.58 16 2 O -0.40 -8.39 9.75 -148.98 -1.45 -9.84 16 3 C 0.06 1.19 2.21 30.69 0.07 1.25 16 4 H 0.07 1.32 7.79 -2.39 -0.02 1.30 16 5 C 0.05 0.73 6.47 72.02 0.47 1.20 16 6 O -0.39 -6.77 10.77 -148.98 -1.60 -8.37 16 7 C 0.06 0.75 6.84 72.01 0.49 1.25 16 8 C -0.15 -2.33 5.26 30.68 0.16 -2.17 16 9 C -0.09 -1.76 2.03 -10.68 -0.02 -1.78 16 10 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 11 C 0.13 3.76 5.01 86.38 0.43 4.19 16 12 N -0.71 -22.51 5.27 -465.94 -2.45 -24.96 16 13 C 0.56 24.98 7.77 86.80 0.67 25.66 16 14 O -0.59 -31.64 16.33 -3.84 -0.06 -31.70 16 15 C -0.14 -6.62 5.87 -20.13 -0.12 -6.74 16 16 C -0.20 -7.54 9.55 22.70 0.22 -7.32 16 17 C -0.09 -3.69 10.01 22.18 0.22 -3.46 16 18 C -0.22 -10.08 9.78 22.77 0.22 -9.86 16 19 C 0.07 3.66 5.57 -21.32 -0.12 3.54 16 20 C -0.50 -27.31 9.05 23.47 0.21 -27.10 16 21 H 0.08 4.35 7.90 -2.91 -0.02 4.33 16 22 C 0.03 1.51 5.14 85.25 0.44 1.95 16 23 N -0.83 -46.79 10.97 21.82 0.24 -46.55 16 24 Si 0.98 40.02 29.59 68.60 2.03 42.05 16 25 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 26 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 27 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 28 C -0.13 -7.34 8.23 23.01 0.19 -7.15 16 29 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.06 0.69 7.97 -2.39 -0.02 0.67 16 31 H 0.04 0.67 8.09 -2.39 -0.02 0.65 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.11 1.35 7.97 -2.39 -0.02 1.33 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.09 1.32 7.29 -2.39 -0.02 1.30 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.05 1.73 7.65 -2.39 -0.02 1.71 16 40 H 0.41 10.28 5.71 -92.71 -0.53 9.75 16 41 H 0.14 3.90 6.38 -2.91 -0.02 3.88 16 42 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 43 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 44 H 0.29 14.94 8.30 -92.71 -0.77 14.17 16 45 H 0.10 6.06 5.77 -2.91 -0.02 6.04 16 Total: -1.00 -72.35 367.53 1.93 -70.42 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: 0.47 Total: 33.93 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: 4.77 Total: -24.98 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -2.21 Total: -71.51 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -3.12 Total: -49.91 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Total: -72.35 1.93 -70.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452660185.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.404 kcal (2) G-P(sol) polarization free energy of solvation -72.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds