Wall clock time and date at job start Tue Mar 31 2020 12:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00149 * 2 1 4 4 H 1.08996 * 109.52651 * 30.12692 * 3 2 1 5 5 C 1.53098 * 109.52414 * 270.00431 * 3 2 1 6 6 O 1.42913 * 109.41254 * 297.63777 * 5 3 2 7 7 C 1.42893 * 114.09893 * 298.84584 * 6 5 3 8 8 C 1.53095 * 109.41961 * 61.15480 * 7 6 5 9 9 C 1.53176 * 109.21595 * 302.36117 * 8 7 6 10 10 H 1.09003 * 109.54172 * 297.14656 * 9 8 7 11 11 C 1.52997 * 109.54570 * 176.87682 * 9 8 7 12 12 N 1.46501 * 109.47052 * 64.99556 * 11 9 8 13 13 C 1.34769 * 119.99945 * 179.97438 * 12 11 9 14 14 O 1.21552 * 120.00371 * 0.02562 * 13 12 11 15 15 C 1.47894 * 120.00018 * 180.02562 * 13 12 11 16 16 C 1.39917 * 120.02205 * 0.02562 * 15 13 12 17 17 C 1.38328 * 120.35259 * 180.02562 * 16 15 13 18 18 C 1.37754 * 120.41681 * 359.97438 * 17 16 15 19 19 C 1.40746 * 120.03815 * 359.97438 * 18 17 16 20 20 C 1.41434 * 120.18044 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99753 * 24.35832 * 20 19 18 22 22 C 1.39933 * 120.00440 * 204.35848 * 20 19 18 23 23 N 1.30828 * 119.99938 * 17.74429 * 22 20 19 24 24 Si 1.86799 * 120.00191 * 197.73759 * 22 20 19 25 25 H 1.48502 * 109.46937 * 90.00572 * 24 22 20 26 26 H 1.48498 * 109.47237 * 209.99946 * 24 22 20 27 27 H 1.48500 * 109.47373 * 330.00626 * 24 22 20 28 28 C 1.38999 * 120.02191 * 179.72834 * 15 13 12 29 29 H 1.08992 * 109.47837 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47059 * 299.99955 * 1 2 3 31 31 H 1.09000 * 109.47334 * 59.99411 * 1 2 3 32 32 H 1.08995 * 109.48139 * 177.66204 * 5 3 2 33 33 H 1.08991 * 109.48281 * 57.61946 * 5 3 2 34 34 H 1.09004 * 109.48293 * 301.17441 * 7 6 5 35 35 H 1.09000 * 109.49034 * 181.14913 * 7 6 5 36 36 H 1.09004 * 109.51989 * 62.29953 * 8 7 6 37 37 H 1.08995 * 109.52244 * 182.42449 * 8 7 6 38 38 H 1.09000 * 109.47133 * 185.00040 * 11 9 8 39 39 H 1.09000 * 109.47095 * 305.00233 * 11 9 8 40 40 H 0.97003 * 120.00004 * 0.02562 * 12 11 9 41 41 H 1.07995 * 119.82397 * 359.97438 * 16 15 13 42 42 H 1.08004 * 119.78903 * 180.02562 * 17 16 15 43 43 H 1.07999 * 119.98121 * 179.97438 * 18 17 16 44 44 H 0.96996 * 120.00113 * 179.97438 * 23 22 20 45 45 H 1.07997 * 120.20283 * 0.02562 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3467 1.9996 0.5156 5 6 2.2182 1.7729 -1.4429 6 8 3.1339 0.8939 -2.0997 7 6 4.4314 0.8508 -1.5026 8 6 4.3123 0.3463 -0.0621 9 6 3.3649 1.2640 0.7168 10 1 3.7848 2.2690 0.7605 11 6 3.1792 0.7226 2.1356 12 7 4.4550 0.7853 2.8530 13 6 4.5321 0.3588 4.1291 14 8 3.5433 -0.0782 4.6848 15 6 5.8199 0.4226 4.8536 16 6 6.9584 0.9261 4.2147 17 6 8.1664 0.9883 4.8856 18 6 8.2629 0.5562 6.1900 19 6 7.1282 0.0477 6.8494 20 6 7.2237 -0.3964 8.1889 21 1 8.0011 -0.0105 8.8316 22 6 6.3108 -1.3356 8.6815 23 7 5.6029 -2.0576 7.8512 24 14 6.1031 -1.5588 10.5244 25 1 5.0454 -0.6409 11.0181 26 1 5.7139 -2.9627 10.8123 27 1 7.3848 -1.2503 11.2080 28 6 5.8987 -0.0118 6.1716 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 2.6230 2.7849 -1.4424 33 1 1.2639 1.7631 -1.9694 34 1 4.8651 1.8508 -1.5028 35 1 5.0715 0.1769 -2.0720 36 1 3.9165 -0.6693 -0.0633 37 1 5.2952 0.3536 0.4088 38 1 2.4374 1.3248 2.6601 39 1 2.8396 -0.3121 2.0882 40 1 5.2441 1.1344 2.4098 41 1 6.8937 1.2671 3.1920 42 1 9.0394 1.3790 4.3838 43 1 9.2097 0.6076 6.7070 44 1 4.9704 -2.7089 8.1926 45 1 5.0215 -0.3971 6.6700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452660187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:51 Heat of formation + Delta-G solvation = -116.954709 kcal Electronic energy + Delta-G solvation = -26703.448282 eV Core-core repulsion = 22878.312452 eV Total energy + Delta-G solvation = -3825.135830 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.27765 -39.03119 -37.18958 -37.03560 -35.32793 -33.75481 -32.53556 -30.78640 -30.17604 -29.43394 -27.33884 -26.80165 -25.28700 -23.68055 -23.38107 -21.80716 -20.91490 -20.27640 -19.48077 -17.79537 -16.90067 -16.74597 -16.22883 -16.03638 -15.66619 -15.50314 -15.10919 -14.82280 -14.62343 -14.58567 -14.17788 -13.74853 -13.39690 -13.25047 -13.16394 -12.65295 -12.62103 -12.48968 -12.35881 -12.01730 -11.63150 -11.56128 -11.21742 -11.15762 -11.06242 -10.94302 -10.73934 -10.58983 -10.49680 -10.28475 -10.01442 -9.69325 -9.37486 -9.21987 -8.99121 -8.62355 -7.62775 -7.52349 -6.79921 -4.41598 2.22026 2.81454 3.07816 3.11042 3.15656 3.38942 3.66232 3.76042 3.88540 3.92373 4.41293 4.46496 4.59108 4.65257 4.67177 4.96603 5.03221 5.10287 5.15200 5.19122 5.24057 5.37661 5.41647 5.52108 5.59799 5.61827 5.69596 5.76601 5.90546 6.03218 6.11837 6.22549 6.26685 6.71839 6.81628 6.87745 6.99009 7.02053 7.07813 7.21336 7.38121 7.70039 7.76041 7.92699 8.10205 8.19546 8.50754 8.80274 8.83534 8.97486 10.14749 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020905 B = 0.002795 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.058759 B =10016.684453 C =11057.816346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.366 6.366 3 C 0.062 3.938 4 H 0.073 0.927 5 C 0.043 3.957 6 O -0.373 6.373 7 C 0.061 3.939 8 C -0.149 4.149 9 C -0.097 4.097 10 H 0.088 0.912 11 C 0.133 3.867 12 N -0.737 5.737 13 C 0.563 3.437 14 O -0.546 6.546 15 C -0.127 4.127 16 C -0.219 4.219 17 C -0.097 4.097 18 C -0.213 4.213 19 C 0.099 3.901 20 C -0.460 4.460 21 H 0.081 0.919 22 C 0.073 3.927 23 N -0.782 5.782 24 Si 0.911 3.089 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.262 1.262 28 C -0.092 4.092 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.038 0.962 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.049 0.951 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.397 0.603 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.285 0.715 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.384 6.925 -16.081 18.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C 0.003 3.997 4 H 0.090 0.910 5 C -0.035 4.035 6 O -0.291 6.291 7 C -0.016 4.016 8 C -0.187 4.187 9 C -0.116 4.116 10 H 0.106 0.894 11 C 0.009 3.991 12 N -0.391 5.391 13 C 0.354 3.646 14 O -0.424 6.424 15 C -0.131 4.131 16 C -0.239 4.239 17 C -0.116 4.116 18 C -0.233 4.233 19 C 0.096 3.904 20 C -0.489 4.489 21 H 0.099 0.901 22 C -0.146 4.146 23 N -0.406 5.406 24 Si 0.735 3.265 25 H -0.192 1.192 26 H -0.202 1.202 27 H -0.186 1.186 28 C -0.113 4.113 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.067 0.933 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.233 0.767 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.096 0.904 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.229 6.114 -15.850 18.463 hybrid contribution 0.112 0.384 0.762 0.860 sum -7.116 6.498 -15.089 17.904 Atomic orbital electron populations 1.22814 0.81245 1.03007 0.99660 1.88007 1.19317 1.26285 1.94860 1.22759 0.94859 0.86203 0.95897 0.90953 1.23049 0.94389 0.93032 0.93016 1.87956 1.22129 1.65549 1.53482 1.22620 0.84691 1.00569 0.93719 1.22208 0.99993 1.01091 0.95365 1.21570 0.94763 1.00431 0.94838 0.89374 1.21136 0.86504 1.02091 0.89415 1.45946 1.11918 1.67245 1.14001 1.18838 0.89275 0.75983 0.80528 1.90697 1.38170 1.45900 1.67622 1.19483 0.91482 1.06043 0.96065 1.20315 0.93592 1.11511 0.98461 1.20429 0.95812 1.00268 0.95071 1.21093 0.97474 1.09917 0.94787 1.17604 0.90192 0.89528 0.93047 1.19598 1.12539 1.20543 0.96206 0.90063 1.25972 0.94043 0.94140 1.00480 1.69791 1.18337 1.15553 1.36964 0.86265 0.79782 0.78214 0.82225 1.19152 1.20215 1.18584 1.21646 0.98765 0.98697 0.92153 0.89491 0.93934 0.94300 0.92273 0.88817 0.93290 0.88651 0.89745 0.90502 0.92197 0.90792 0.76731 0.89354 0.88936 0.88634 0.90416 0.84862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.35 16 2 O -0.37 -4.25 9.08 -42.65 -0.39 -4.64 16 3 C 0.06 0.60 2.43 -26.52 -0.06 0.53 16 4 H 0.07 0.59 7.79 -51.93 -0.40 0.19 16 5 C 0.04 0.37 6.49 37.21 0.24 0.61 16 6 O -0.37 -4.11 10.70 -42.65 -0.46 -4.57 16 7 C 0.06 0.56 6.84 37.21 0.25 0.82 16 8 C -0.15 -1.57 5.09 -26.59 -0.14 -1.71 16 9 C -0.10 -1.02 2.16 -90.37 -0.19 -1.22 16 10 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 11 C 0.13 1.90 4.83 -4.04 -0.02 1.88 16 12 N -0.74 -12.16 5.26 -61.24 -0.32 -12.48 16 13 C 0.56 12.45 7.77 -12.31 -0.10 12.35 16 14 O -0.55 -13.95 16.33 5.32 0.09 -13.86 16 15 C -0.13 -3.02 5.87 -105.03 -0.62 -3.64 16 16 C -0.22 -4.56 9.55 -38.92 -0.37 -4.93 16 17 C -0.10 -2.07 10.01 -39.73 -0.40 -2.46 16 18 C -0.21 -5.05 9.78 -38.81 -0.38 -5.43 16 19 C 0.10 2.62 5.57 -106.87 -0.60 2.02 16 20 C -0.46 -12.11 9.05 -37.73 -0.34 -12.45 16 21 H 0.08 2.03 7.91 -52.48 -0.41 1.61 16 22 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 23 N -0.78 -20.86 10.96 55.55 0.61 -20.25 16 24 Si 0.91 18.85 29.59 -169.99 -5.03 13.82 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 27 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 28 C -0.09 -2.48 8.24 -38.44 -0.32 -2.80 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.04 0.27 7.83 -51.93 -0.41 -0.14 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.70 7.83 -51.93 -0.41 0.29 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.06 7.83 -51.93 -0.41 0.66 16 37 H 0.08 0.78 7.28 -51.93 -0.38 0.40 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.21 7.77 -51.93 -0.40 0.81 16 40 H 0.40 5.59 5.69 -40.82 -0.23 5.36 16 41 H 0.09 1.50 6.38 -52.49 -0.33 1.17 16 42 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 43 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 44 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 45 H 0.13 3.88 5.74 -52.49 -0.30 3.58 16 LS Contribution 366.30 15.07 5.52 5.52 Total: -1.00 -31.49 366.30 -8.64 -40.13 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -6.63 Total: 9.65 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -2.03 Total: -13.32 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 0.29 Total: -32.73 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.76 Total: -23.07 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.49 -8.64 -40.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452660187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.829 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds