Wall clock time and date at job start Tue Mar 31 2020 12:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00149 * 2 1 4 4 H 1.08996 * 109.52651 * 30.12692 * 3 2 1 5 5 C 1.53098 * 109.52414 * 270.00431 * 3 2 1 6 6 O 1.42913 * 109.41254 * 297.63777 * 5 3 2 7 7 C 1.42893 * 114.09893 * 298.84584 * 6 5 3 8 8 C 1.53095 * 109.41961 * 61.15480 * 7 6 5 9 9 C 1.53176 * 109.21595 * 302.36117 * 8 7 6 10 10 H 1.09003 * 109.54172 * 297.14656 * 9 8 7 11 11 C 1.52997 * 109.54570 * 176.87682 * 9 8 7 12 12 N 1.46501 * 109.47052 * 64.99556 * 11 9 8 13 13 C 1.34769 * 119.99945 * 179.97438 * 12 11 9 14 14 O 1.21552 * 120.00371 * 0.02562 * 13 12 11 15 15 C 1.47894 * 120.00018 * 180.02562 * 13 12 11 16 16 C 1.39917 * 120.02205 * 0.02562 * 15 13 12 17 17 C 1.38328 * 120.35259 * 180.02562 * 16 15 13 18 18 C 1.37754 * 120.41681 * 359.97438 * 17 16 15 19 19 C 1.40746 * 120.03815 * 359.97438 * 18 17 16 20 20 C 1.41434 * 120.18044 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99753 * 24.35832 * 20 19 18 22 22 C 1.39933 * 120.00440 * 204.35848 * 20 19 18 23 23 N 1.30828 * 119.99938 * 17.74429 * 22 20 19 24 24 Si 1.86799 * 120.00191 * 197.73759 * 22 20 19 25 25 H 1.48502 * 109.46937 * 90.00572 * 24 22 20 26 26 H 1.48498 * 109.47237 * 209.99946 * 24 22 20 27 27 H 1.48500 * 109.47373 * 330.00626 * 24 22 20 28 28 C 1.38999 * 120.02191 * 179.72834 * 15 13 12 29 29 H 1.08992 * 109.47837 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47059 * 299.99955 * 1 2 3 31 31 H 1.09000 * 109.47334 * 59.99411 * 1 2 3 32 32 H 1.08995 * 109.48139 * 177.66204 * 5 3 2 33 33 H 1.08991 * 109.48281 * 57.61946 * 5 3 2 34 34 H 1.09004 * 109.48293 * 301.17441 * 7 6 5 35 35 H 1.09000 * 109.49034 * 181.14913 * 7 6 5 36 36 H 1.09004 * 109.51989 * 62.29953 * 8 7 6 37 37 H 1.08995 * 109.52244 * 182.42449 * 8 7 6 38 38 H 1.09000 * 109.47133 * 185.00040 * 11 9 8 39 39 H 1.09000 * 109.47095 * 305.00233 * 11 9 8 40 40 H 0.97003 * 120.00004 * 0.02562 * 12 11 9 41 41 H 1.07995 * 119.82397 * 359.97438 * 16 15 13 42 42 H 1.08004 * 119.78903 * 180.02562 * 17 16 15 43 43 H 1.07999 * 119.98121 * 179.97438 * 18 17 16 44 44 H 0.96996 * 120.00113 * 179.97438 * 23 22 20 45 45 H 1.07997 * 120.20283 * 0.02562 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3467 1.9996 0.5156 5 6 2.2182 1.7729 -1.4429 6 8 3.1339 0.8939 -2.0997 7 6 4.4314 0.8508 -1.5026 8 6 4.3123 0.3463 -0.0621 9 6 3.3649 1.2640 0.7168 10 1 3.7848 2.2690 0.7605 11 6 3.1792 0.7226 2.1356 12 7 4.4550 0.7853 2.8530 13 6 4.5321 0.3588 4.1291 14 8 3.5433 -0.0782 4.6848 15 6 5.8199 0.4226 4.8536 16 6 6.9584 0.9261 4.2147 17 6 8.1664 0.9883 4.8856 18 6 8.2629 0.5562 6.1900 19 6 7.1282 0.0477 6.8494 20 6 7.2237 -0.3964 8.1889 21 1 8.0011 -0.0105 8.8316 22 6 6.3108 -1.3356 8.6815 23 7 5.6029 -2.0576 7.8512 24 14 6.1031 -1.5588 10.5244 25 1 5.0454 -0.6409 11.0181 26 1 5.7139 -2.9627 10.8123 27 1 7.3848 -1.2503 11.2080 28 6 5.8987 -0.0118 6.1716 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 2.6230 2.7849 -1.4424 33 1 1.2639 1.7631 -1.9694 34 1 4.8651 1.8508 -1.5028 35 1 5.0715 0.1769 -2.0720 36 1 3.9165 -0.6693 -0.0633 37 1 5.2952 0.3536 0.4088 38 1 2.4374 1.3248 2.6601 39 1 2.8396 -0.3121 2.0882 40 1 5.2441 1.1344 2.4098 41 1 6.8937 1.2671 3.1920 42 1 9.0394 1.3790 4.3838 43 1 9.2097 0.6076 6.7070 44 1 4.9704 -2.7089 8.1926 45 1 5.0215 -0.3971 6.6700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452660187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:51 Heat of formation + Delta-G solvation = -137.891590 kcal Electronic energy + Delta-G solvation = -26704.356173 eV Core-core repulsion = 22878.312452 eV Total energy + Delta-G solvation = -3826.043721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.26447 -40.54171 -38.82239 -37.94144 -36.61852 -35.60282 -33.81145 -31.94744 -31.47629 -31.26880 -28.50345 -27.49107 -27.13802 -24.72397 -24.39539 -23.23061 -22.71020 -21.37877 -20.89195 -19.53376 -18.08140 -17.65488 -17.34519 -17.29129 -16.85195 -16.59116 -16.46132 -16.32240 -15.96862 -15.85601 -15.27517 -15.00967 -14.89880 -14.58850 -14.42782 -14.26547 -14.06146 -13.48891 -13.42040 -13.21384 -13.00145 -12.91758 -12.81475 -12.52295 -12.26285 -12.19515 -12.03605 -11.89730 -11.70313 -11.50137 -11.37723 -11.08917 -11.01105 -10.81647 -10.17638 -10.06228 -9.47030 -9.38320 -8.66905 -6.38595 0.37966 1.00860 1.35706 1.47729 1.50296 2.09755 2.18488 2.21549 2.73230 2.78538 3.07990 3.59840 3.65681 3.70031 3.75870 3.90207 4.05998 4.29015 4.29978 4.37508 4.42546 4.48099 4.49565 4.57096 4.60072 4.61948 4.71984 4.75298 4.85683 4.87500 4.88921 4.98167 5.08038 5.08966 5.19739 5.30953 5.32484 5.44687 5.52223 5.86711 5.92549 6.05516 6.13430 6.28838 6.40118 6.50977 6.68650 6.87687 6.94813 7.30700 8.29784 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020905 B = 0.002795 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.058759 B =10016.684453 C =11057.816346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.057 3.943 4 H 0.088 0.912 5 C 0.042 3.958 6 O -0.396 6.396 7 C 0.062 3.938 8 C -0.147 4.147 9 C -0.089 4.089 10 H 0.117 0.883 11 C 0.135 3.865 12 N -0.709 5.709 13 C 0.558 3.442 14 O -0.592 6.592 15 C -0.139 4.139 16 C -0.196 4.196 17 C -0.095 4.095 18 C -0.217 4.217 19 C 0.067 3.933 20 C -0.497 4.497 21 H 0.084 0.916 22 C 0.028 3.972 23 N -0.826 5.826 24 Si 0.983 3.017 25 H -0.266 1.266 26 H -0.270 1.270 27 H -0.250 1.250 28 C -0.132 4.132 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.047 0.953 40 H 0.413 0.587 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.109 0.891 44 H 0.286 0.714 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.164 9.188 -18.265 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.001 4.001 4 H 0.106 0.894 5 C -0.035 4.035 6 O -0.315 6.315 7 C -0.015 4.015 8 C -0.185 4.185 9 C -0.108 4.108 10 H 0.135 0.865 11 C 0.012 3.988 12 N -0.363 5.363 13 C 0.348 3.652 14 O -0.474 6.474 15 C -0.142 4.142 16 C -0.215 4.215 17 C -0.113 4.113 18 C -0.237 4.237 19 C 0.064 3.936 20 C -0.527 4.527 21 H 0.103 0.897 22 C -0.186 4.186 23 N -0.452 5.452 24 Si 0.804 3.196 25 H -0.191 1.191 26 H -0.195 1.195 27 H -0.173 1.173 28 C -0.153 4.153 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.252 0.748 41 H 0.156 0.844 42 H 0.158 0.842 43 H 0.127 0.873 44 H 0.096 0.904 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.979 8.409 -18.093 20.828 hybrid contribution -0.239 -0.238 1.226 1.271 sum -6.218 8.171 -16.867 19.746 Atomic orbital electron populations 1.22931 0.80089 1.03411 1.00697 1.87972 1.20790 1.27779 1.95094 1.22917 0.94430 0.85862 0.96936 0.89413 1.23187 0.94742 0.93667 0.91858 1.87930 1.23027 1.66426 1.54155 1.22695 0.84394 1.01960 0.92402 1.22177 0.99948 0.99616 0.96766 1.21584 0.95892 1.01454 0.91845 0.86547 1.21213 0.85124 1.00858 0.91644 1.45704 1.13523 1.65025 1.12025 1.18782 0.88247 0.76090 0.82040 1.90674 1.39416 1.48186 1.69090 1.19786 0.93415 1.05664 0.95379 1.20850 0.92117 1.08300 1.00263 1.20937 0.97540 0.98773 0.94018 1.21419 0.97076 1.09042 0.96166 1.17949 0.91078 0.90710 0.93815 1.19874 1.13924 1.21890 0.96987 0.89749 1.26871 0.93263 0.93337 1.05173 1.69897 1.19527 1.16647 1.39079 0.85183 0.79982 0.78250 0.76201 1.19119 1.19478 1.17279 1.21446 0.98000 1.01795 0.94038 0.89580 0.93656 0.92407 0.89842 0.87841 0.90904 0.88128 0.92648 0.89865 0.92552 0.93430 0.74850 0.84383 0.84166 0.87329 0.90368 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.82 113.37 1.23 1.64 16 2 O -0.40 -8.96 9.08 -141.89 -1.29 -10.25 16 3 C 0.06 0.98 2.43 30.73 0.07 1.05 16 4 H 0.09 1.21 7.79 -2.39 -0.02 1.19 16 5 C 0.04 0.60 6.49 72.01 0.47 1.07 16 6 O -0.40 -7.73 10.70 -141.89 -1.52 -9.25 16 7 C 0.06 0.96 6.84 72.01 0.49 1.45 16 8 C -0.15 -2.78 5.09 30.69 0.16 -2.63 16 9 C -0.09 -1.65 2.16 -10.63 -0.02 -1.67 16 10 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 11 C 0.14 3.75 4.83 86.38 0.42 4.17 16 12 N -0.71 -22.30 5.26 -465.93 -2.45 -24.75 16 13 C 0.56 24.92 7.77 86.80 0.67 25.60 16 14 O -0.59 -31.72 16.33 -3.88 -0.06 -31.78 16 15 C -0.14 -6.61 5.87 -20.13 -0.12 -6.73 16 16 C -0.20 -7.52 9.55 22.70 0.22 -7.30 16 17 C -0.09 -3.68 10.01 22.18 0.22 -3.46 16 18 C -0.22 -10.10 9.78 22.77 0.22 -9.88 16 19 C 0.07 3.65 5.57 -21.32 -0.12 3.53 16 20 C -0.50 -27.29 9.05 23.47 0.21 -27.08 16 21 H 0.08 4.36 7.91 -2.91 -0.02 4.34 16 22 C 0.03 1.50 5.14 85.25 0.44 1.94 16 23 N -0.83 -46.85 10.96 21.82 0.24 -46.62 16 24 Si 0.98 40.12 29.59 68.60 2.03 42.15 16 25 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 26 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 27 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 28 C -0.13 -7.42 8.24 23.01 0.19 -7.23 16 29 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.04 0.70 8.09 -2.38 -0.02 0.68 16 31 H 0.06 0.71 7.83 -2.39 -0.02 0.69 16 32 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.10 1.24 7.83 -2.39 -0.02 1.22 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.05 1.38 7.83 -2.38 -0.02 1.36 16 37 H 0.08 1.42 7.28 -2.39 -0.02 1.41 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.05 1.60 7.77 -2.39 -0.02 1.59 16 40 H 0.41 10.11 5.69 -92.71 -0.53 9.58 16 41 H 0.14 3.88 6.38 -2.91 -0.02 3.86 16 42 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 43 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 44 H 0.29 14.98 8.30 -92.71 -0.77 14.21 16 45 H 0.10 6.08 5.74 -2.91 -0.02 6.06 16 Total: -1.00 -74.52 366.30 2.17 -72.35 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: 0.47 Total: 33.69 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 4.75 Total: -25.53 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -2.21 Total: -71.37 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -2.87 Total: -51.28 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Total: -74.52 2.17 -72.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452660187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.540 kcal (2) G-P(sol) polarization free energy of solvation -74.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds