Wall clock time and date at job start Tue Mar 31 2020 12:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 114.00022 * 2 1 4 4 H 1.09003 * 110.91411 * 32.44691 * 3 2 1 5 5 C 1.54910 * 111.00282 * 268.54865 * 3 2 1 6 6 N 1.47428 * 104.82987 * 204.91455 * 5 3 2 7 7 C 1.34773 * 125.65114 * 204.08914 * 6 5 3 8 8 O 1.21275 * 119.99684 * 0.02562 * 7 6 5 9 9 C 1.50708 * 120.00129 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.46910 * 179.97438 * 9 7 6 11 11 H 1.09007 * 109.47019 * 54.99831 * 10 9 7 12 12 C 1.50701 * 109.47445 * 295.00368 * 10 9 7 13 13 H 1.07996 * 119.99372 * 324.85331 * 12 10 9 14 14 C 1.37875 * 120.00161 * 145.12761 * 12 10 9 15 15 N 1.31517 * 119.99646 * 184.98757 * 14 12 10 16 16 Si 1.86804 * 120.00063 * 4.98800 * 14 12 10 17 17 H 1.48500 * 109.47088 * 84.72904 * 16 14 12 18 18 H 1.48505 * 109.46825 * 204.72707 * 16 14 12 19 19 H 1.48493 * 109.46905 * 324.72855 * 16 14 12 20 20 C 1.50697 * 109.47157 * 174.99869 * 10 9 7 21 21 C 1.38241 * 119.99600 * 64.69085 * 20 10 9 22 22 C 1.38238 * 119.99547 * 179.81163 * 21 20 10 23 23 C 1.38234 * 120.00429 * 0.39764 * 22 21 20 24 24 C 1.38237 * 119.99572 * 359.85860 * 23 22 21 25 25 C 1.38231 * 120.00310 * 359.95091 * 24 23 22 26 26 C 1.47031 * 108.70231 * 24.35608 * 6 5 3 27 27 C 1.54330 * 107.26395 * 358.58202 * 26 6 5 28 28 H 1.09006 * 110.51321 * 96.45316 * 27 26 6 29 29 O 1.42894 * 110.85159 * 219.67437 * 27 26 6 30 30 H 1.08997 * 109.47273 * 300.00046 * 1 2 3 31 31 H 1.09007 * 109.46903 * 59.99765 * 1 2 3 32 32 H 1.08995 * 109.47005 * 179.97438 * 1 2 3 33 33 H 1.08993 * 110.36914 * 86.07872 * 5 3 2 34 34 H 1.09001 * 110.45930 * 323.79973 * 5 3 2 35 35 H 1.08996 * 109.46612 * 60.00527 * 9 7 6 36 36 H 1.08992 * 109.46580 * 300.00016 * 9 7 6 37 37 H 0.97007 * 119.99518 * 180.02562 * 15 14 12 38 38 H 1.07999 * 119.99869 * 0.02562 * 21 20 10 39 39 H 1.07998 * 119.99480 * 180.23368 * 22 21 20 40 40 H 1.07996 * 120.00302 * 179.83366 * 23 22 21 41 41 H 1.08001 * 119.99904 * 179.97438 * 24 23 22 42 42 H 1.08004 * 120.00080 * 179.97438 * 25 24 23 43 43 H 1.08994 * 109.88196 * 118.13170 * 26 6 5 44 44 H 1.09001 * 109.87850 * 239.29530 * 26 6 5 45 45 H 0.96703 * 114.00228 * 293.69212 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3836 2.0104 0.5463 5 6 2.2696 1.7978 -1.4457 6 7 3.3611 2.7807 -1.3196 7 6 3.6196 3.7828 -2.1830 8 8 2.9230 3.9322 -3.1644 9 6 4.7734 4.7182 -1.9282 10 6 4.8459 5.7558 -3.0503 11 1 3.8855 6.2639 -3.1379 12 6 5.1704 5.0674 -4.3510 13 1 5.8320 4.2139 -4.3597 14 6 4.6271 5.5306 -5.5305 15 7 4.8304 4.8729 -6.6511 16 14 3.6022 7.0924 -5.5368 17 1 4.4980 8.2719 -5.6453 18 1 2.6719 7.0693 -6.6941 19 1 2.8221 7.1776 -4.2761 20 6 5.9205 6.7638 -2.7336 21 6 7.2433 6.3672 -2.6710 22 6 8.2294 7.2926 -2.3844 23 6 7.8920 8.6128 -2.1523 24 6 6.5687 9.0083 -2.2097 25 6 5.5829 8.0838 -2.5002 26 6 4.1251 2.4829 -0.0991 27 6 3.4486 1.2739 0.5811 28 1 3.9551 0.3485 0.3067 29 8 3.4241 1.4369 2.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.3762 2.2730 -1.8506 34 1 2.5781 0.9678 -2.0813 35 1 5.7027 4.1493 -1.8993 36 1 4.6270 5.2240 -0.9740 37 1 4.4485 5.1991 -7.4810 38 1 7.5066 5.3351 -2.8494 39 1 9.2632 6.9834 -2.3392 40 1 8.6622 9.3352 -1.9258 41 1 6.3049 10.0397 -2.0280 42 1 4.5490 8.3927 -2.5447 43 1 5.1551 2.2370 -0.3573 44 1 4.1036 3.3426 0.5706 45 1 4.2986 1.4244 2.4130 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456396820.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:56 Heat of formation + Delta-G solvation = -119.436797 kcal Electronic energy + Delta-G solvation = -27190.107337 eV Core-core repulsion = 23364.863875 eV Total energy + Delta-G solvation = -3825.243461 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.31374 -40.16899 -39.38328 -37.83172 -36.46851 -35.82824 -33.75690 -31.73772 -31.57197 -30.23084 -29.38072 -28.03421 -27.19956 -24.75187 -23.81936 -23.23926 -22.22350 -21.37464 -20.15730 -19.06958 -18.77280 -18.34685 -17.53325 -17.24643 -16.69302 -16.58734 -16.24212 -16.20283 -15.87116 -15.59116 -15.34749 -14.95921 -14.79249 -14.59489 -14.23618 -14.05182 -13.88781 -13.78964 -13.56013 -13.46908 -13.25447 -13.17227 -12.89947 -12.77010 -12.42152 -12.06476 -11.89328 -11.84356 -11.67289 -11.49914 -11.31190 -11.03258 -10.89637 -10.71617 -10.49327 -9.65996 -9.63352 -9.31675 -8.23681 -6.19843 0.67246 0.72200 1.27994 1.31622 1.37194 1.80307 1.86601 2.37902 2.57763 3.07149 3.14866 3.21689 3.29029 3.69923 3.88362 3.93911 4.10346 4.14042 4.27947 4.30473 4.32902 4.39094 4.43562 4.48036 4.50191 4.56678 4.58948 4.68169 4.70969 4.82198 4.82875 4.84557 4.87358 5.01455 5.18377 5.29219 5.38052 5.40122 5.67951 5.76244 5.81911 6.01426 6.06433 6.31368 6.35157 6.50494 6.78938 6.84317 7.36098 7.43577 8.93674 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013688 B = 0.003967 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.123798 B = 7056.193548 C = 8400.084720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.386 6.386 3 C 0.090 3.910 4 H 0.089 0.911 5 C 0.086 3.914 6 N -0.626 5.626 7 C 0.526 3.474 8 O -0.557 6.557 9 C -0.101 4.101 10 C 0.047 3.953 11 H 0.036 0.964 12 C -0.463 4.463 13 H 0.036 0.964 14 C 0.025 3.975 15 N -0.952 5.952 16 Si 0.919 3.081 17 H -0.264 1.264 18 H -0.299 1.299 19 H -0.252 1.252 20 C -0.063 4.063 21 C -0.118 4.118 22 C -0.123 4.123 23 C -0.140 4.140 24 C -0.123 4.123 25 C -0.158 4.158 26 C 0.072 3.928 27 C 0.111 3.889 28 H 0.094 0.906 29 O -0.562 6.562 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.258 0.742 38 H 0.111 0.889 39 H 0.141 0.859 40 H 0.147 0.853 41 H 0.140 0.860 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.174 -2.872 20.752 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.304 6.304 3 C 0.030 3.970 4 H 0.107 0.893 5 C -0.038 4.038 6 N -0.365 5.365 7 C 0.316 3.684 8 O -0.434 6.434 9 C -0.141 4.141 10 C 0.028 3.972 11 H 0.055 0.945 12 C -0.501 4.501 13 H 0.054 0.946 14 C -0.172 4.172 15 N -0.594 5.594 16 Si 0.746 3.254 17 H -0.189 1.189 18 H -0.226 1.226 19 H -0.177 1.177 20 C -0.064 4.064 21 C -0.136 4.136 22 C -0.141 4.141 23 C -0.157 4.157 24 C -0.141 4.141 25 C -0.176 4.176 26 C -0.051 4.051 27 C 0.051 3.949 28 H 0.112 0.888 29 O -0.370 6.370 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.124 0.876 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.067 0.933 38 H 0.129 0.871 39 H 0.159 0.841 40 H 0.165 0.835 41 H 0.158 0.842 42 H 0.125 0.875 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -0.751 -2.867 19.900 20.119 hybrid contribution -0.400 0.497 -1.091 1.263 sum -1.150 -2.370 18.809 18.993 Atomic orbital electron populations 1.23042 0.79100 1.04365 1.00803 1.87871 1.21812 1.26033 1.94709 1.23098 0.95204 0.85742 0.92906 0.89317 1.22563 0.91235 0.92030 0.97966 1.48359 1.32195 1.30253 1.25643 1.20908 0.86070 0.80486 0.80944 1.90733 1.51187 1.72661 1.28772 1.21535 0.96095 0.96359 1.00120 1.18169 0.93584 0.92131 0.93320 0.94540 1.20801 1.26456 1.12301 0.90545 0.94601 1.25583 0.96809 0.99262 0.95511 1.70033 1.48449 1.41156 0.99721 0.86168 0.79844 0.81748 0.77607 1.18858 1.22585 1.17651 1.20474 0.96023 0.94873 0.95018 1.21019 0.92493 1.00077 1.00017 1.21415 0.99591 0.93627 0.99452 1.21350 0.96433 0.96343 1.01618 1.21338 0.93232 0.99636 0.99878 1.21211 0.99636 0.93695 1.03040 1.22967 0.96785 0.99415 0.85920 1.22611 0.93907 0.96820 0.81608 0.88785 1.86494 1.36695 1.96074 1.17771 0.92695 0.93838 0.87570 0.91595 0.91502 0.88474 0.87798 0.93297 0.87081 0.84135 0.83499 0.84200 0.87516 0.88873 0.88702 0.74335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.89 113.37 1.23 1.62 16 2 O -0.39 -8.78 10.51 -148.98 -1.57 -10.34 16 3 C 0.09 2.03 3.21 31.98 0.10 2.14 16 4 H 0.09 1.96 7.90 -2.39 -0.02 1.95 16 5 C 0.09 2.51 6.64 86.85 0.58 3.09 16 6 N -0.63 -19.57 3.33 -811.77 -2.70 -22.27 16 7 C 0.53 21.65 7.60 87.66 0.67 22.31 16 8 O -0.56 -29.51 15.24 -3.01 -0.05 -29.56 16 9 C -0.10 -3.76 4.16 29.85 0.12 -3.64 16 10 C 0.05 2.18 1.21 -12.29 -0.01 2.17 16 11 H 0.04 1.84 4.70 -2.38 -0.01 1.83 16 12 C -0.46 -26.50 6.87 25.60 0.18 -26.33 16 13 H 0.04 2.24 8.06 -2.91 -0.02 2.22 16 14 C 0.02 1.52 5.47 84.65 0.46 1.98 16 15 N -0.95 -62.91 13.96 21.45 0.30 -62.61 16 16 Si 0.92 48.63 27.15 68.60 1.86 50.50 16 17 H -0.26 -13.20 7.11 99.48 0.71 -12.49 16 18 H -0.30 -15.97 7.11 99.48 0.71 -15.26 16 19 H -0.25 -12.76 6.06 99.48 0.60 -12.15 16 20 C -0.06 -2.57 4.55 -19.87 -0.09 -2.66 16 21 C -0.12 -4.34 8.87 22.27 0.20 -4.14 16 22 C -0.12 -3.67 10.05 22.27 0.22 -3.44 16 23 C -0.14 -3.80 10.05 22.27 0.22 -3.57 16 24 C -0.12 -3.67 10.05 22.27 0.22 -3.45 16 25 C -0.16 -5.80 9.43 22.27 0.21 -5.59 16 26 C 0.07 1.46 6.27 86.73 0.54 2.00 16 27 C 0.11 2.02 4.05 31.78 0.13 2.15 16 28 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 29 O -0.56 -8.68 13.39 -148.98 -2.00 -10.67 16 30 H 0.05 0.81 8.11 -2.39 -0.02 0.79 16 31 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 2.12 8.04 -2.39 -0.02 2.10 16 34 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.10 3.32 7.86 -2.39 -0.02 3.30 16 36 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 37 H 0.26 16.29 8.31 -92.70 -0.77 15.52 16 38 H 0.11 4.17 7.80 -2.91 -0.02 4.15 16 39 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 40 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 41 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 42 H 0.11 3.88 7.95 -2.91 -0.02 3.86 16 43 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.09 1.66 8.05 -2.39 -0.02 1.64 16 45 H 0.40 2.24 9.12 -74.06 -0.68 1.56 16 Total: -1.00 -82.59 372.14 1.05 -81.54 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.21 Total: 18.78 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 4.99 Total: -15.36 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -2.40 Total: -84.88 kcal Atomic # 8 Polarization: -46.97 SS G_CDS: -3.61 Total: -50.58 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 1.86 Total: 50.50 kcal Total: -82.59 1.05 -81.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456396820.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.899 kcal (2) G-P(sol) polarization free energy of solvation -82.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds