Wall clock time and date at job start Tue Mar 31 2020 12:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99818 * 2 1 4 4 C 1.53003 * 109.46968 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47178 * 65.00196 * 4 3 2 6 6 C 1.36897 * 119.99891 * 278.14544 * 5 4 3 7 7 H 1.07996 * 120.00530 * 53.34478 * 6 5 4 8 8 C 1.39021 * 119.99651 * 233.35011 * 6 5 4 9 9 N 1.31390 * 120.00242 * 41.19376 * 8 6 5 10 10 Si 1.86803 * 120.00157 * 221.18936 * 8 6 5 11 11 H 1.48501 * 109.47026 * 64.99719 * 10 8 6 12 12 H 1.48494 * 109.47316 * 184.99999 * 10 8 6 13 13 H 1.48498 * 109.47078 * 305.00269 * 10 8 6 14 14 C 1.34777 * 119.99911 * 98.13645 * 5 4 3 15 15 O 1.21623 * 119.99813 * 186.34227 * 14 5 4 16 16 C 1.47496 * 119.99986 * 6.34881 * 14 5 4 17 17 C 1.39797 * 120.09254 * 135.26437 * 16 14 5 18 18 C 1.37688 * 119.90007 * 179.72038 * 17 16 14 19 19 C 1.39007 * 120.09849 * 0.26905 * 18 17 16 20 20 O 1.35712 * 119.90831 * 179.97438 * 19 18 17 21 21 C 1.42902 * 116.99758 * 356.64782 * 20 19 18 22 22 C 1.53777 * 113.61440 * 255.14449 * 21 20 19 23 23 C 1.53951 * 87.02304 * 220.04970 * 22 21 20 24 24 C 1.53783 * 87.10996 * 25.36530 * 23 22 21 25 25 C 1.39008 * 120.18669 * 0.03325 * 19 18 17 26 26 C 1.37691 * 120.09411 * 359.94408 * 25 19 18 27 27 H 1.09000 * 109.47265 * 299.99841 * 1 2 3 28 28 H 1.08997 * 109.46806 * 59.99941 * 1 2 3 29 29 H 1.09000 * 109.46994 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47258 * 60.00125 * 3 2 1 31 31 H 1.08998 * 109.47506 * 299.99919 * 3 2 1 32 32 H 1.08995 * 109.47389 * 304.99941 * 4 3 2 33 33 H 1.09007 * 109.46800 * 184.99924 * 4 3 2 34 34 H 0.97000 * 119.99674 * 184.98795 * 9 8 6 35 35 H 1.07999 * 120.04802 * 359.97438 * 17 16 14 36 36 H 1.08009 * 119.94977 * 180.30264 * 18 17 16 37 37 H 1.08999 * 112.85358 * 26.34877 * 21 20 19 38 38 H 1.08999 * 113.61719 * 334.57060 * 22 21 20 39 39 H 1.09007 * 113.60995 * 105.47419 * 22 21 20 40 40 H 1.08999 * 113.54194 * 270.81609 * 23 22 21 41 41 H 1.08997 * 113.66756 * 139.93161 * 23 22 21 42 42 H 1.08998 * 113.61587 * 220.08997 * 24 23 22 43 43 H 1.08997 * 113.68907 * 89.19835 * 24 23 22 44 44 H 1.08005 * 119.95429 * 179.97438 * 25 19 18 45 45 H 1.08005 * 120.04665 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 3.9390 -0.7973 -1.3903 7 1 3.0224 -1.3348 -1.1970 8 6 5.0806 -1.4879 -1.7807 9 7 6.2511 -1.1558 -1.2848 10 14 4.9505 -2.8883 -3.0102 11 1 4.5018 -2.3554 -4.3217 12 1 6.2782 -3.5346 -3.1666 13 1 3.9680 -3.8879 -2.5198 14 6 4.4197 1.3333 -2.2650 15 8 4.6766 0.8306 -3.3423 16 6 4.5929 2.7848 -2.0684 17 6 5.7457 3.4228 -2.5356 18 6 5.9007 4.7789 -2.3551 19 6 4.9156 5.5126 -1.7043 20 8 5.0726 6.8491 -1.5280 21 6 6.3052 7.4213 -1.9699 22 6 7.2697 7.7676 -0.8234 23 6 7.6071 9.0519 -1.6023 24 6 6.2178 8.9309 -2.2505 25 6 3.7706 4.8811 -1.2326 26 6 3.6073 3.5254 -1.4094 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8899 32 1 3.8508 0.5686 0.8426 33 1 3.9784 2.1766 0.0902 34 1 7.0561 -1.5882 -1.6103 35 1 6.5117 2.8534 -3.0411 36 1 6.7889 5.2735 -2.7200 37 1 6.7705 6.8537 -2.7757 38 1 6.7695 7.9522 0.1273 39 1 8.1082 7.0767 -0.7346 40 1 8.4298 8.9302 -2.3070 41 1 7.7181 9.9316 -0.9685 42 1 6.2083 9.1778 -3.3121 43 1 5.4286 9.4339 -1.6918 44 1 3.0077 5.4548 -0.7272 45 1 2.7172 3.0356 -1.0429 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457200050.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:46 Heat of formation + Delta-G solvation = -39.741734 kcal Electronic energy + Delta-G solvation = -27152.621361 eV Core-core repulsion = 23330.833737 eV Total energy + Delta-G solvation = -3821.787624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.43713 -39.21203 -37.77778 -37.08796 -35.87806 -34.30905 -32.20489 -30.79226 -29.64942 -28.92620 -25.99754 -25.91691 -25.71840 -24.72247 -22.74607 -22.32769 -21.84072 -19.80944 -19.44520 -18.42508 -17.10369 -16.29224 -16.11056 -16.04697 -15.57596 -15.24644 -14.91617 -14.79116 -14.44187 -14.28656 -14.11804 -13.89582 -13.33993 -13.23351 -12.84737 -12.76030 -12.45470 -12.24171 -12.10610 -11.84885 -11.59891 -11.45891 -11.41211 -11.21047 -11.09868 -10.84702 -10.79227 -10.64392 -10.42570 -10.38311 -10.29831 -10.13064 -9.14863 -8.72374 -8.45657 -8.26937 -7.80056 -7.21974 -6.21714 -3.81551 1.51084 1.64594 3.22524 3.41254 3.49023 3.63143 3.78681 4.19920 4.26340 4.28998 4.33339 4.50754 4.53365 4.55894 4.88079 4.92640 5.08346 5.18639 5.20896 5.36764 5.40588 5.45075 5.50706 5.54862 5.60564 5.64107 5.65915 5.66884 5.74995 5.79681 5.88374 5.93219 5.96684 6.02464 6.06982 6.17925 6.29981 6.51975 6.62152 6.73106 6.90496 6.95865 7.56094 7.69449 7.76355 8.43267 9.05598 9.18233 9.60890 10.22071 10.78350 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015502 B = 0.003558 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.745472 B = 7868.519607 C = 9153.685347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.046 3.954 4 C 0.086 3.914 5 N -0.426 5.426 6 C -0.353 4.353 7 H 0.092 0.908 8 C 0.094 3.906 9 N -0.826 5.826 10 Si 0.888 3.112 11 H -0.269 1.269 12 H -0.292 1.292 13 H -0.276 1.276 14 C 0.516 3.484 15 O -0.558 6.558 16 C -0.132 4.132 17 C -0.034 4.034 18 C -0.217 4.217 19 C 0.129 3.871 20 O -0.304 6.304 21 C 0.051 3.949 22 C -0.156 4.156 23 C -0.141 4.141 24 C -0.131 4.131 25 C -0.161 4.161 26 C -0.074 4.074 27 H 0.031 0.969 28 H 0.034 0.966 29 H 0.080 0.920 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.265 0.735 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.128 0.872 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.046 17.942 3.107 18.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.279 6.279 3 C -0.031 4.031 4 C -0.038 4.038 5 N -0.145 5.145 6 C -0.478 4.478 7 H 0.109 0.891 8 C -0.118 4.118 9 N -0.458 5.458 10 Si 0.714 3.286 11 H -0.194 1.194 12 H -0.218 1.218 13 H -0.201 1.201 14 C 0.304 3.696 15 O -0.440 6.440 16 C -0.136 4.136 17 C -0.053 4.053 18 C -0.235 4.235 19 C 0.084 3.916 20 O -0.218 6.218 21 C -0.005 4.005 22 C -0.194 4.194 23 C -0.178 4.178 24 C -0.169 4.169 25 C -0.180 4.180 26 C -0.093 4.093 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.111 0.889 44 H 0.146 0.854 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.736 17.551 2.750 17.849 hybrid contribution 0.109 -0.404 -0.611 0.740 sum -1.628 17.147 2.139 17.356 Atomic orbital electron populations 1.22688 0.82965 1.02174 0.98940 1.88166 1.17800 1.26964 1.94986 1.23225 0.96099 0.85197 0.98621 1.21991 0.90861 0.99084 0.91830 1.43098 1.57079 1.05842 1.08518 1.18860 0.96218 0.80254 1.52435 0.89100 1.25269 0.94725 0.97016 0.94755 1.70288 0.99374 1.42606 1.33511 0.86677 0.76930 0.80980 0.84040 1.19379 1.21801 1.20098 1.18097 0.82275 0.84284 0.84909 1.90621 1.53807 1.74131 1.25456 1.20417 0.95807 0.96157 1.01196 1.21004 0.96319 0.93003 0.94978 1.21101 1.00671 0.95113 1.06629 1.19104 0.94687 0.82474 0.95360 1.86086 1.38016 1.19520 1.78138 1.24213 0.84409 0.94081 0.97832 1.23530 0.99278 0.97736 0.98857 1.22682 0.96890 0.98410 0.99821 1.23174 0.98005 0.93913 1.01790 1.20272 0.97486 0.94251 1.05985 1.21665 0.99122 0.92766 0.95726 0.95003 0.94722 0.90136 0.93742 0.93645 0.90360 0.90208 0.92543 0.85288 0.85499 0.88039 0.88983 0.90755 0.89757 0.90471 0.90627 0.88935 0.85360 0.84232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.36 -6.98 9.10 -35.23 -0.32 -7.30 16 3 C 0.05 0.80 5.32 37.16 0.20 1.00 16 4 C 0.09 1.77 5.32 -4.04 -0.02 1.75 16 5 N -0.43 -10.89 2.52 -116.00 -0.29 -11.18 16 6 C -0.35 -10.02 8.28 -15.00 -0.12 -10.14 16 7 H 0.09 2.61 6.97 -52.49 -0.37 2.24 16 8 C 0.09 2.73 4.14 -17.45 -0.07 2.65 16 9 N -0.83 -24.32 13.88 55.50 0.77 -23.55 16 10 Si 0.89 22.83 29.69 -169.99 -5.05 17.79 16 11 H -0.27 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.52 13.37 7.01 -12.49 -0.09 13.28 16 15 O -0.56 -16.66 16.20 5.26 0.09 -16.58 16 16 C -0.13 -2.75 5.14 -104.96 -0.54 -3.29 16 17 C -0.03 -0.65 9.68 -39.20 -0.38 -1.03 16 18 C -0.22 -3.37 9.08 -39.50 -0.36 -3.72 16 19 C 0.13 1.94 6.69 -39.01 -0.26 1.68 16 20 O -0.30 -4.06 10.14 -18.84 -0.19 -4.25 16 21 C 0.05 0.53 3.85 -25.92 -0.10 0.43 16 22 C -0.16 -1.39 7.93 -25.83 -0.20 -1.60 16 23 C -0.14 -0.98 8.09 -25.83 -0.21 -1.19 16 24 C -0.13 -1.06 7.91 -25.92 -0.21 -1.26 16 25 C -0.16 -2.43 9.97 -39.50 -0.39 -2.82 16 26 C -0.07 -1.28 7.37 -39.20 -0.29 -1.56 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.77 6.27 -51.93 -0.33 0.44 16 32 H 0.08 1.69 8.10 -51.93 -0.42 1.27 16 33 H 0.08 1.48 4.94 -51.93 -0.26 1.22 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.13 2.53 8.06 -52.49 -0.42 2.11 16 36 H 0.13 1.62 5.68 -52.48 -0.30 1.32 16 37 H 0.10 1.01 5.61 -51.93 -0.29 0.72 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 45 H 0.14 2.23 3.59 -52.48 -0.19 2.04 16 LS Contribution 366.65 15.07 5.53 5.53 Total: -1.00 -34.52 366.65 -7.76 -42.28 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.36 Total: 1.56 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -1.94 Total: -4.30 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.48 Total: -34.73 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.43 Total: -28.12 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.05 Total: 17.79 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.52 -7.76 -42.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457200050.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.537 kcal (2) G-P(sol) polarization free energy of solvation -34.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds