Wall clock time and date at job start Tue Mar 31 2020 12:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99818 * 2 1 4 4 C 1.53003 * 109.46968 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47178 * 65.00196 * 4 3 2 6 6 C 1.36897 * 119.99891 * 278.14544 * 5 4 3 7 7 H 1.07996 * 120.00530 * 53.34478 * 6 5 4 8 8 C 1.39021 * 119.99651 * 233.35011 * 6 5 4 9 9 N 1.31390 * 120.00242 * 41.19376 * 8 6 5 10 10 Si 1.86803 * 120.00157 * 221.18936 * 8 6 5 11 11 H 1.48501 * 109.47026 * 64.99719 * 10 8 6 12 12 H 1.48494 * 109.47316 * 184.99999 * 10 8 6 13 13 H 1.48498 * 109.47078 * 305.00269 * 10 8 6 14 14 C 1.34777 * 119.99911 * 98.13645 * 5 4 3 15 15 O 1.21623 * 119.99813 * 186.34227 * 14 5 4 16 16 C 1.47496 * 119.99986 * 6.34881 * 14 5 4 17 17 C 1.39797 * 120.09254 * 135.26437 * 16 14 5 18 18 C 1.37688 * 119.90007 * 179.72038 * 17 16 14 19 19 C 1.39007 * 120.09849 * 0.26905 * 18 17 16 20 20 O 1.35712 * 119.90831 * 179.97438 * 19 18 17 21 21 C 1.42902 * 116.99758 * 356.64782 * 20 19 18 22 22 C 1.53777 * 113.61440 * 255.14449 * 21 20 19 23 23 C 1.53951 * 87.02304 * 220.04970 * 22 21 20 24 24 C 1.53783 * 87.10996 * 25.36530 * 23 22 21 25 25 C 1.39008 * 120.18669 * 0.03325 * 19 18 17 26 26 C 1.37691 * 120.09411 * 359.94408 * 25 19 18 27 27 H 1.09000 * 109.47265 * 299.99841 * 1 2 3 28 28 H 1.08997 * 109.46806 * 59.99941 * 1 2 3 29 29 H 1.09000 * 109.46994 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47258 * 60.00125 * 3 2 1 31 31 H 1.08998 * 109.47506 * 299.99919 * 3 2 1 32 32 H 1.08995 * 109.47389 * 304.99941 * 4 3 2 33 33 H 1.09007 * 109.46800 * 184.99924 * 4 3 2 34 34 H 0.97000 * 119.99674 * 184.98795 * 9 8 6 35 35 H 1.07999 * 120.04802 * 359.97438 * 17 16 14 36 36 H 1.08009 * 119.94977 * 180.30264 * 18 17 16 37 37 H 1.08999 * 112.85358 * 26.34877 * 21 20 19 38 38 H 1.08999 * 113.61719 * 334.57060 * 22 21 20 39 39 H 1.09007 * 113.60995 * 105.47419 * 22 21 20 40 40 H 1.08999 * 113.54194 * 270.81609 * 23 22 21 41 41 H 1.08997 * 113.66756 * 139.93161 * 23 22 21 42 42 H 1.08998 * 113.61587 * 220.08997 * 24 23 22 43 43 H 1.08997 * 113.68907 * 89.19835 * 24 23 22 44 44 H 1.08005 * 119.95429 * 179.97438 * 25 19 18 45 45 H 1.08005 * 120.04665 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 3.9390 -0.7973 -1.3903 7 1 3.0224 -1.3348 -1.1970 8 6 5.0806 -1.4879 -1.7807 9 7 6.2511 -1.1558 -1.2848 10 14 4.9505 -2.8883 -3.0102 11 1 4.5018 -2.3554 -4.3217 12 1 6.2782 -3.5346 -3.1666 13 1 3.9680 -3.8879 -2.5198 14 6 4.4197 1.3333 -2.2650 15 8 4.6766 0.8306 -3.3423 16 6 4.5929 2.7848 -2.0684 17 6 5.7457 3.4228 -2.5356 18 6 5.9007 4.7789 -2.3551 19 6 4.9156 5.5126 -1.7043 20 8 5.0726 6.8491 -1.5280 21 6 6.3052 7.4213 -1.9699 22 6 7.2697 7.7676 -0.8234 23 6 7.6071 9.0519 -1.6023 24 6 6.2178 8.9309 -2.2505 25 6 3.7706 4.8811 -1.2326 26 6 3.6073 3.5254 -1.4094 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8899 32 1 3.8508 0.5686 0.8426 33 1 3.9784 2.1766 0.0902 34 1 7.0561 -1.5882 -1.6103 35 1 6.5117 2.8534 -3.0411 36 1 6.7889 5.2735 -2.7200 37 1 6.7705 6.8537 -2.7757 38 1 6.7695 7.9522 0.1273 39 1 8.1082 7.0767 -0.7346 40 1 8.4298 8.9302 -2.3070 41 1 7.7181 9.9316 -0.9685 42 1 6.2083 9.1778 -3.3121 43 1 5.4286 9.4339 -1.6918 44 1 3.0077 5.4548 -0.7272 45 1 2.7172 3.0356 -1.0429 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457200050.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:45 Heat of formation + Delta-G solvation = -61.637461 kcal Electronic energy + Delta-G solvation = -27153.570831 eV Core-core repulsion = 23330.833737 eV Total energy + Delta-G solvation = -3822.737094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.59936 -40.67172 -38.97664 -38.55869 -37.03982 -36.23301 -34.22169 -32.16497 -31.10260 -30.51272 -27.31093 -26.88519 -26.60678 -26.24790 -24.30424 -23.52744 -23.33420 -21.26833 -20.52087 -19.53386 -18.89622 -17.96214 -17.47498 -17.26384 -16.78162 -16.51830 -16.44109 -16.09997 -15.89917 -15.79031 -15.46063 -15.30775 -15.03037 -14.54896 -14.28026 -13.81121 -13.77706 -13.46639 -13.37251 -13.26175 -13.02560 -12.99986 -12.79685 -12.65620 -12.51918 -12.34337 -12.17846 -12.09820 -11.97466 -11.77373 -11.27949 -11.17655 -10.59360 -10.42373 -10.32816 -10.03018 -9.32407 -9.10038 -8.36448 -6.00955 0.12993 0.32552 1.31877 1.41602 1.52373 2.09346 2.21991 2.36471 2.73109 3.00850 3.04751 3.19059 3.57040 3.60160 3.70011 3.80175 3.85904 3.89946 4.02422 4.19532 4.24753 4.34208 4.39449 4.52839 4.53533 4.58301 4.62970 4.66079 4.66973 4.80016 4.81474 4.90223 4.98363 5.01645 5.05394 5.09427 5.11258 5.17799 5.28077 5.40150 5.50643 5.56339 5.67119 6.30939 6.44325 6.44773 6.98333 7.11423 7.56076 8.18774 8.61207 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015502 B = 0.003558 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.745472 B = 7868.519607 C = 9153.685347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.051 3.949 4 C 0.086 3.914 5 N -0.439 5.439 6 C -0.365 4.365 7 H 0.081 0.919 8 C 0.052 3.948 9 N -0.857 5.857 10 Si 0.936 3.064 11 H -0.292 1.292 12 H -0.281 1.281 13 H -0.256 1.256 14 C 0.507 3.493 15 O -0.616 6.616 16 C -0.168 4.168 17 C -0.050 4.050 18 C -0.209 4.209 19 C 0.143 3.857 20 O -0.304 6.304 21 C 0.031 3.969 22 C -0.159 4.159 23 C -0.130 4.130 24 C -0.126 4.126 25 C -0.152 4.152 26 C -0.066 4.066 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.265 0.735 35 H 0.108 0.892 36 H 0.154 0.846 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.164 0.836 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.993 21.088 4.168 21.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C -0.026 4.026 4 C -0.037 4.037 5 N -0.158 5.158 6 C -0.491 4.491 7 H 0.099 0.901 8 C -0.156 4.156 9 N -0.491 5.491 10 Si 0.760 3.240 11 H -0.219 1.219 12 H -0.207 1.207 13 H -0.180 1.180 14 C 0.298 3.702 15 O -0.501 6.501 16 C -0.171 4.171 17 C -0.069 4.069 18 C -0.227 4.227 19 C 0.096 3.904 20 O -0.217 6.217 21 C -0.025 4.025 22 C -0.197 4.197 23 C -0.167 4.167 24 C -0.164 4.164 25 C -0.170 4.170 26 C -0.085 4.085 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.126 0.874 36 H 0.171 0.829 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.112 0.888 44 H 0.181 0.819 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.704 20.703 3.856 21.232 hybrid contribution 0.367 -1.169 -0.907 1.525 sum -2.336 19.534 2.948 19.892 Atomic orbital electron populations 1.22884 0.80467 1.03198 1.00585 1.88096 1.20650 1.28194 1.95367 1.23165 0.93364 0.85134 1.00898 1.22131 0.93601 0.99235 0.88687 1.43270 1.57035 1.05240 1.10232 1.18931 0.95708 0.81897 1.52530 0.90106 1.25919 0.94739 0.99180 0.95807 1.70311 0.99759 1.44373 1.34644 0.85917 0.77725 0.79315 0.81005 1.21871 1.20658 1.17973 1.18880 0.80740 0.86512 0.84097 1.90553 1.56064 1.75922 1.27604 1.20083 0.98391 0.93425 1.05227 1.20925 0.95724 0.94482 0.95757 1.21251 1.01905 0.93508 1.06028 1.19239 0.94103 0.83391 0.93625 1.86117 1.39678 1.18085 1.77833 1.24677 0.83713 0.95361 0.98741 1.23560 0.98807 0.98856 0.98446 1.22682 0.96579 0.97803 0.99617 1.23202 0.98713 0.91764 1.02693 1.20581 0.98111 0.93336 1.05017 1.21692 0.98347 0.93567 0.94853 0.92095 0.94158 0.89620 0.89229 0.93208 0.92109 0.88154 0.92560 0.87420 0.82868 0.87709 0.89263 0.90854 0.88671 0.89140 0.89564 0.88781 0.81851 0.83076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 11.01 113.37 1.25 1.91 16 2 O -0.40 -15.31 9.10 -148.98 -1.36 -16.66 16 3 C 0.05 1.69 5.32 71.98 0.38 2.08 16 4 C 0.09 3.54 5.32 86.38 0.46 4.00 16 5 N -0.44 -23.17 2.52 -639.17 -1.61 -24.78 16 6 C -0.36 -21.51 8.28 84.09 0.70 -20.81 16 7 H 0.08 4.82 6.97 -2.91 -0.02 4.80 16 8 C 0.05 3.13 4.14 84.95 0.35 3.48 16 9 N -0.86 -52.48 13.88 21.68 0.30 -52.18 16 10 Si 0.94 48.53 29.69 68.60 2.04 50.57 16 11 H -0.29 -16.15 7.11 99.48 0.71 -15.44 16 12 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 13 H -0.26 -12.27 7.11 99.48 0.71 -11.57 16 14 C 0.51 27.38 7.01 86.68 0.61 27.98 16 15 O -0.62 -38.84 16.20 -4.10 -0.07 -38.90 16 16 C -0.17 -7.11 5.14 -20.08 -0.10 -7.21 16 17 C -0.05 -1.92 9.68 22.52 0.22 -1.71 16 18 C -0.21 -6.19 9.08 22.32 0.20 -5.98 16 19 C 0.14 3.89 6.69 22.64 0.15 4.04 16 20 O -0.30 -7.07 10.14 -90.34 -0.92 -7.98 16 21 C 0.03 0.54 3.85 31.12 0.12 0.66 16 22 C -0.16 -2.39 7.93 31.18 0.25 -2.14 16 23 C -0.13 -1.36 8.09 31.18 0.25 -1.10 16 24 C -0.13 -1.61 7.91 31.12 0.25 -1.36 16 25 C -0.15 -4.07 9.97 22.33 0.22 -3.85 16 26 C -0.07 -2.17 7.37 22.52 0.17 -2.00 16 27 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.05 1.60 6.27 -2.39 -0.01 1.58 16 32 H 0.06 2.67 8.10 -2.39 -0.02 2.65 16 33 H 0.10 3.64 4.94 -2.38 -0.01 3.63 16 34 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 36 H 0.15 3.61 5.68 -2.91 -0.02 3.60 16 37 H 0.11 1.78 5.61 -2.39 -0.01 1.76 16 38 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 45 H 0.15 4.50 3.59 -2.91 -0.01 4.49 16 Total: -1.00 -79.52 366.65 4.86 -74.66 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 1.00 Total: 17.29 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 5.47 Total: -2.01 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -1.31 Total: -76.96 kcal Atomic # 8 Polarization: -61.21 SS G_CDS: -2.34 Total: -63.55 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.04 Total: 50.57 kcal Total: -79.52 4.86 -74.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457200050.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.024 kcal (2) G-P(sol) polarization free energy of solvation -79.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds