Wall clock time and date at job start Tue Mar 31 2020 12:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99897 * 2 1 4 4 C 1.52995 * 109.47239 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46533 * 65.00203 * 4 3 2 6 6 C 1.37102 * 119.99971 * 264.46722 * 5 4 3 7 7 H 1.07991 * 119.99667 * 138.27158 * 6 5 4 8 8 C 1.38948 * 119.99919 * 318.26811 * 6 5 4 9 9 N 1.31409 * 120.00293 * 341.89229 * 8 6 5 10 10 Si 1.86801 * 119.99897 * 161.88641 * 8 6 5 11 11 H 1.48500 * 109.47013 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47184 * 120.00055 * 10 8 6 13 13 H 1.48499 * 109.47058 * 240.00271 * 10 8 6 14 14 C 1.34781 * 120.00056 * 84.47568 * 5 4 3 15 15 O 1.21293 * 119.99932 * 359.97438 * 14 5 4 16 16 C 1.50698 * 120.00009 * 179.97438 * 14 5 4 17 17 O 1.42898 * 109.46861 * 179.97438 * 16 14 5 18 18 C 1.42904 * 113.99589 * 180.02562 * 17 16 14 19 19 C 1.50701 * 109.46771 * 180.02562 * 18 17 16 20 20 C 1.32570 * 120.00195 * 134.99799 * 19 18 17 21 21 C 1.47811 * 120.00435 * 179.97438 * 20 19 18 22 22 C 1.39529 * 120.14145 * 179.97438 * 21 20 19 23 23 C 1.37980 * 119.85423 * 179.97438 * 22 21 20 24 24 C 1.38348 * 120.14220 * 0.02562 * 23 22 21 25 25 C 1.38345 * 120.28424 * 359.97438 * 24 23 22 26 26 C 1.37970 * 120.14331 * 0.02562 * 25 24 23 27 27 H 1.09004 * 109.46857 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47254 * 300.00181 * 1 2 3 29 29 H 1.09002 * 109.46996 * 60.00607 * 1 2 3 30 30 H 1.09008 * 109.47086 * 59.99621 * 3 2 1 31 31 H 1.08999 * 109.47126 * 299.99633 * 3 2 1 32 32 H 1.09002 * 109.47390 * 305.00566 * 4 3 2 33 33 H 1.08996 * 109.47268 * 184.99939 * 4 3 2 34 34 H 0.97005 * 120.00446 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.47079 * 59.99886 * 16 14 5 36 36 H 1.08993 * 109.47255 * 299.99925 * 16 14 5 37 37 H 1.08994 * 109.47563 * 60.00176 * 18 17 16 38 38 H 1.09002 * 109.46983 * 299.99924 * 18 17 16 39 39 H 1.08002 * 119.99947 * 314.99628 * 19 18 17 40 40 H 1.08002 * 119.99858 * 359.97438 * 20 19 18 41 41 H 1.08000 * 120.07433 * 0.02562 * 22 21 20 42 42 H 1.08000 * 119.92879 * 179.72434 * 23 22 21 43 43 H 1.07994 * 119.85402 * 179.97438 * 24 23 22 44 44 H 1.07998 * 119.92761 * 180.02562 * 25 24 23 45 45 H 1.07996 * 120.07506 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2510 6 6 4.2071 -0.7864 -1.3024 7 1 3.8793 -1.3579 -2.1581 8 6 4.8625 -1.4198 -0.2536 9 7 5.5677 -0.7146 0.6021 10 14 4.7411 -3.2738 -0.0600 11 1 3.8933 -3.8303 -1.1448 12 1 6.0991 -3.8695 -0.1373 13 1 4.1338 -3.5952 1.2564 14 6 4.1559 1.3208 -2.3518 15 8 3.9517 2.5155 -2.3064 16 6 4.6102 0.6824 -3.6391 17 8 4.7258 1.6835 -4.6523 18 6 5.1523 1.1806 -5.9201 19 6 5.2398 2.3161 -6.9071 20 6 6.2927 2.4204 -7.7060 21 6 6.3783 3.5337 -8.6745 22 6 7.4853 3.6465 -9.5162 23 6 7.5588 4.6878 -10.4185 24 6 6.5382 5.6192 -10.4892 25 6 5.4379 5.5129 -9.6573 26 6 5.3523 4.4763 -8.7508 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.6885 1.8464 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 3.8508 0.5685 0.8426 33 1 3.9784 2.1766 0.0902 34 1 6.0255 -1.1568 1.3341 35 1 3.8818 -0.0665 -3.9501 36 1 5.5786 0.2060 -3.4865 37 1 4.4352 0.4421 -6.2781 38 1 6.1321 0.7146 -5.8151 39 1 4.4448 3.0449 -6.9637 40 1 7.0879 1.6918 -7.6491 41 1 8.2825 2.9199 -9.4623 42 1 8.4173 4.7789 -11.0675 43 1 6.6008 6.4326 -11.1968 44 1 4.6443 6.2429 -9.7177 45 1 4.4927 4.3942 -8.1022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457200088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:56 Heat of formation + Delta-G solvation = -76.278075 kcal Electronic energy + Delta-G solvation = -25633.221875 eV Core-core repulsion = 21809.849916 eV Total energy + Delta-G solvation = -3823.371959 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.32734 -38.78575 -37.42500 -36.71081 -34.70673 -34.38726 -31.59655 -31.12527 -30.52800 -29.58117 -27.13050 -25.81390 -25.22206 -24.50211 -23.02743 -22.00739 -21.77516 -19.52946 -19.05398 -17.34540 -17.08919 -16.40025 -15.80744 -15.77792 -15.46697 -15.29725 -15.16825 -14.78600 -14.50578 -14.29049 -14.13709 -13.96810 -13.54262 -13.32825 -13.17735 -13.07330 -12.54829 -12.11270 -12.01540 -11.80806 -11.48774 -11.25288 -11.17675 -11.15175 -11.02497 -10.98461 -10.81485 -10.67260 -10.34052 -10.28538 -10.04172 -9.20993 -9.12332 -9.10207 -8.97179 -8.38683 -8.17724 -7.46253 -6.34563 -4.07160 0.79816 1.26108 2.38484 3.14966 3.25829 3.29306 3.74869 3.86506 3.94450 4.20540 4.50853 4.63923 4.67792 4.80999 4.93045 5.00830 5.08287 5.23369 5.29405 5.32432 5.44899 5.55682 5.63212 5.66734 5.72794 5.81956 5.89130 5.94698 5.98880 6.00115 6.06619 6.16653 6.18190 6.29749 6.35431 6.35971 6.36372 6.57283 6.71138 6.72311 6.85070 7.23482 7.44167 7.61291 7.82506 8.01603 8.37407 9.11885 9.51292 9.93823 10.69400 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017458 B = 0.002349 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.509313 B =11919.625600 C =12865.468497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.051 3.949 4 C 0.124 3.876 5 N -0.430 5.430 6 C -0.330 4.330 7 H 0.084 0.916 8 C 0.050 3.950 9 N -0.863 5.863 10 Si 0.916 3.084 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.279 1.279 14 C 0.476 3.524 15 O -0.591 6.591 16 C 0.065 3.935 17 O -0.365 6.365 18 C 0.087 3.913 19 C -0.118 4.118 20 C -0.127 4.127 21 C -0.046 4.046 22 C -0.113 4.113 23 C -0.121 4.121 24 C -0.127 4.127 25 C -0.118 4.118 26 C -0.116 4.116 27 H 0.077 0.923 28 H 0.030 0.970 29 H 0.032 0.968 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.269 0.731 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.698 4.212 -14.690 15.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.027 4.027 4 C 0.000 4.000 5 N -0.150 5.150 6 C -0.458 4.458 7 H 0.102 0.898 8 C -0.156 4.156 9 N -0.499 5.499 10 Si 0.743 3.257 11 H -0.192 1.192 12 H -0.210 1.210 13 H -0.205 1.205 14 C 0.264 3.736 15 O -0.476 6.476 16 C -0.014 4.014 17 O -0.284 6.284 18 C 0.010 3.990 19 C -0.136 4.136 20 C -0.145 4.145 21 C -0.046 4.046 22 C -0.131 4.131 23 C -0.139 4.139 24 C -0.145 4.145 25 C -0.136 4.136 26 C -0.134 4.134 27 H 0.096 0.904 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.125 0.875 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.608 4.793 -14.436 15.223 hybrid contribution -0.239 -1.100 0.217 1.147 sum -0.848 3.693 -14.219 14.715 Atomic orbital electron populations 1.22645 0.83404 1.01715 0.98879 1.88122 1.17406 1.27825 1.95062 1.23063 0.96561 0.84275 0.98798 1.21343 0.89065 0.98946 0.90621 1.43185 1.57201 1.07288 1.07298 1.19282 1.36822 0.82077 1.07631 0.89793 1.25357 0.93631 0.99877 0.96753 1.69935 1.27553 1.36626 1.15810 0.86062 0.77762 0.83164 0.78728 1.19239 1.21002 1.20503 1.20050 0.81148 0.86450 0.85913 1.90541 1.56164 1.15175 1.85695 1.22070 1.01599 0.90129 0.87631 1.87995 1.88598 1.33712 1.18056 1.21418 0.99066 0.94317 0.84217 1.23214 0.97999 0.98058 0.94339 1.21565 0.98364 0.97397 0.97212 1.19072 0.94590 0.95081 0.95907 1.21269 0.97590 0.98510 0.95700 1.21077 0.98846 0.95058 0.98909 1.21190 0.94450 0.99246 0.99612 1.21099 0.98272 0.98165 0.96045 1.21414 0.98754 0.94490 0.98710 0.90431 0.95137 0.94976 0.94219 0.93913 0.87535 0.91132 0.92130 0.91644 0.90534 0.92222 0.92692 0.86121 0.86133 0.85859 0.86103 0.86267 0.85997 0.85502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.37 -7.78 10.44 -35.23 -0.37 -8.14 16 3 C 0.05 1.07 6.24 37.16 0.23 1.30 16 4 C 0.12 2.99 5.27 -4.04 -0.02 2.97 16 5 N -0.43 -10.93 2.45 -114.81 -0.28 -11.21 16 6 C -0.33 -8.35 8.29 -14.93 -0.12 -8.48 16 7 H 0.08 2.04 7.21 -52.49 -0.38 1.66 16 8 C 0.05 1.26 4.95 -17.47 -0.09 1.17 16 9 N -0.86 -22.82 11.66 55.50 0.65 -22.17 16 10 Si 0.92 19.71 29.59 -169.99 -5.03 14.68 16 11 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 12 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 13 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 14 C 0.48 12.04 7.67 -10.98 -0.08 11.95 16 15 O -0.59 -16.37 16.17 -14.36 -0.23 -16.61 16 16 C 0.06 1.36 5.15 36.00 0.19 1.55 16 17 O -0.37 -7.39 9.86 -55.14 -0.54 -7.93 16 18 C 0.09 1.28 6.36 36.01 0.23 1.51 16 19 C -0.12 -1.59 9.31 -36.21 -0.34 -1.92 16 20 C -0.13 -1.52 9.51 -37.57 -0.36 -1.88 16 21 C -0.05 -0.54 5.87 -105.02 -0.62 -1.16 16 22 C -0.11 -1.15 9.79 -39.19 -0.38 -1.54 16 23 C -0.12 -1.11 10.03 -39.64 -0.40 -1.51 16 24 C -0.13 -1.16 10.04 -39.50 -0.40 -1.55 16 25 C -0.12 -1.16 10.03 -39.64 -0.40 -1.56 16 26 C -0.12 -1.31 9.40 -39.19 -0.37 -1.68 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 31 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.11 2.73 5.81 -51.93 -0.30 2.42 16 33 H 0.07 1.72 7.59 -51.93 -0.39 1.32 16 34 H 0.27 6.69 8.31 -40.82 -0.34 6.36 16 35 H 0.07 1.26 7.70 -51.93 -0.40 0.86 16 36 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.74 7.88 -51.93 -0.41 0.33 16 39 H 0.12 1.60 6.04 -52.49 -0.32 1.29 16 40 H 0.12 1.25 7.92 -52.49 -0.42 0.84 16 41 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 44 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.13 1.37 6.17 -52.49 -0.32 1.04 16 LS Contribution 384.22 15.07 5.79 5.79 Total: -1.00 -31.75 384.22 -8.55 -40.30 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.72 Total: 4.52 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -1.81 Total: 0.78 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.37 Total: -33.38 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -1.14 Total: -32.68 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.75 -8.55 -40.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457200088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.975 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds