Wall clock time and date at job start Tue Mar 31 2020 12:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99897 * 2 1 4 4 C 1.52995 * 109.47239 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46533 * 65.00203 * 4 3 2 6 6 C 1.37102 * 119.99971 * 264.46722 * 5 4 3 7 7 H 1.07991 * 119.99667 * 138.27158 * 6 5 4 8 8 C 1.38948 * 119.99919 * 318.26811 * 6 5 4 9 9 N 1.31409 * 120.00293 * 341.89229 * 8 6 5 10 10 Si 1.86801 * 119.99897 * 161.88641 * 8 6 5 11 11 H 1.48500 * 109.47013 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47184 * 120.00055 * 10 8 6 13 13 H 1.48499 * 109.47058 * 240.00271 * 10 8 6 14 14 C 1.34781 * 120.00056 * 84.47568 * 5 4 3 15 15 O 1.21293 * 119.99932 * 359.97438 * 14 5 4 16 16 C 1.50698 * 120.00009 * 179.97438 * 14 5 4 17 17 O 1.42898 * 109.46861 * 179.97438 * 16 14 5 18 18 C 1.42904 * 113.99589 * 180.02562 * 17 16 14 19 19 C 1.50701 * 109.46771 * 180.02562 * 18 17 16 20 20 C 1.32570 * 120.00195 * 134.99799 * 19 18 17 21 21 C 1.47811 * 120.00435 * 179.97438 * 20 19 18 22 22 C 1.39529 * 120.14145 * 179.97438 * 21 20 19 23 23 C 1.37980 * 119.85423 * 179.97438 * 22 21 20 24 24 C 1.38348 * 120.14220 * 0.02562 * 23 22 21 25 25 C 1.38345 * 120.28424 * 359.97438 * 24 23 22 26 26 C 1.37970 * 120.14331 * 0.02562 * 25 24 23 27 27 H 1.09004 * 109.46857 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47254 * 300.00181 * 1 2 3 29 29 H 1.09002 * 109.46996 * 60.00607 * 1 2 3 30 30 H 1.09008 * 109.47086 * 59.99621 * 3 2 1 31 31 H 1.08999 * 109.47126 * 299.99633 * 3 2 1 32 32 H 1.09002 * 109.47390 * 305.00566 * 4 3 2 33 33 H 1.08996 * 109.47268 * 184.99939 * 4 3 2 34 34 H 0.97005 * 120.00446 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.47079 * 59.99886 * 16 14 5 36 36 H 1.08993 * 109.47255 * 299.99925 * 16 14 5 37 37 H 1.08994 * 109.47563 * 60.00176 * 18 17 16 38 38 H 1.09002 * 109.46983 * 299.99924 * 18 17 16 39 39 H 1.08002 * 119.99947 * 314.99628 * 19 18 17 40 40 H 1.08002 * 119.99858 * 359.97438 * 20 19 18 41 41 H 1.08000 * 120.07433 * 0.02562 * 22 21 20 42 42 H 1.08000 * 119.92879 * 179.72434 * 23 22 21 43 43 H 1.07994 * 119.85402 * 179.97438 * 24 23 22 44 44 H 1.07998 * 119.92761 * 180.02562 * 25 24 23 45 45 H 1.07996 * 120.07506 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2510 6 6 4.2071 -0.7864 -1.3024 7 1 3.8793 -1.3579 -2.1581 8 6 4.8625 -1.4198 -0.2536 9 7 5.5677 -0.7146 0.6021 10 14 4.7411 -3.2738 -0.0600 11 1 3.8933 -3.8303 -1.1448 12 1 6.0991 -3.8695 -0.1373 13 1 4.1338 -3.5952 1.2564 14 6 4.1559 1.3208 -2.3518 15 8 3.9517 2.5155 -2.3064 16 6 4.6102 0.6824 -3.6391 17 8 4.7258 1.6835 -4.6523 18 6 5.1523 1.1806 -5.9201 19 6 5.2398 2.3161 -6.9071 20 6 6.2927 2.4204 -7.7060 21 6 6.3783 3.5337 -8.6745 22 6 7.4853 3.6465 -9.5162 23 6 7.5588 4.6878 -10.4185 24 6 6.5382 5.6192 -10.4892 25 6 5.4379 5.5129 -9.6573 26 6 5.3523 4.4763 -8.7508 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.6885 1.8464 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 3.8508 0.5685 0.8426 33 1 3.9784 2.1766 0.0902 34 1 6.0255 -1.1568 1.3341 35 1 3.8818 -0.0665 -3.9501 36 1 5.5786 0.2060 -3.4865 37 1 4.4352 0.4421 -6.2781 38 1 6.1321 0.7146 -5.8151 39 1 4.4448 3.0449 -6.9637 40 1 7.0879 1.6918 -7.6491 41 1 8.2825 2.9199 -9.4623 42 1 8.4173 4.7789 -11.0675 43 1 6.6008 6.4326 -11.1968 44 1 4.6443 6.2429 -9.7177 45 1 4.4927 4.3942 -8.1022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457200088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:55 Heat of formation + Delta-G solvation = -93.393610 kcal Electronic energy + Delta-G solvation = -25633.964060 eV Core-core repulsion = 21809.849916 eV Total energy + Delta-G solvation = -3824.114144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.65574 -40.08980 -38.92048 -38.28551 -36.55926 -35.48047 -33.54325 -31.89819 -31.70515 -31.07132 -28.61148 -27.26622 -26.63831 -26.14502 -23.84206 -23.55981 -22.82301 -21.10931 -20.36547 -18.88981 -18.36313 -17.89141 -17.41549 -17.21551 -16.87862 -16.69856 -16.45295 -16.08060 -15.98908 -15.80732 -15.59183 -15.24981 -14.82831 -14.55670 -14.22087 -13.92816 -13.87952 -13.65358 -13.47943 -13.20623 -13.10488 -12.89580 -12.79328 -12.55817 -12.50051 -12.27766 -12.01499 -11.97240 -11.79806 -11.72913 -11.25703 -11.01895 -10.60774 -10.55508 -10.31859 -9.85908 -9.43626 -9.07003 -8.27065 -6.05855 -0.05436 0.50352 1.43881 1.47314 1.52038 1.63433 1.97027 2.27646 2.51658 2.98043 3.01038 3.13131 3.36538 3.84086 3.87635 4.11388 4.14915 4.19034 4.23741 4.28453 4.31874 4.40725 4.42894 4.47629 4.51970 4.54641 4.56616 4.61334 4.62718 4.64437 4.69619 4.78758 4.86746 5.06166 5.14329 5.29680 5.34495 5.47020 5.50423 5.61270 5.64437 5.83634 6.01315 6.10255 6.19175 6.39285 6.44197 7.16370 7.56766 7.99633 8.78009 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017458 B = 0.002349 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.509313 B =11919.625600 C =12865.468497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.064 3.936 4 C 0.121 3.879 5 N -0.436 5.436 6 C -0.341 4.341 7 H 0.093 0.907 8 C 0.009 3.991 9 N -0.896 5.896 10 Si 0.983 3.017 11 H -0.257 1.257 12 H -0.279 1.279 13 H -0.282 1.282 14 C 0.457 3.543 15 O -0.627 6.627 16 C 0.078 3.922 17 O -0.394 6.394 18 C 0.084 3.916 19 C -0.147 4.147 20 C -0.107 4.107 21 C -0.075 4.075 22 C -0.118 4.118 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.129 4.129 26 C -0.134 4.134 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.271 0.729 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.113 0.887 40 H 0.137 0.863 41 H 0.141 0.859 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.138 0.862 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.584 3.227 -16.284 16.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.315 6.315 3 C -0.014 4.014 4 C -0.003 4.003 5 N -0.155 5.155 6 C -0.469 4.469 7 H 0.111 0.889 8 C -0.194 4.194 9 N -0.533 5.533 10 Si 0.807 3.193 11 H -0.181 1.181 12 H -0.205 1.205 13 H -0.208 1.208 14 C 0.247 3.753 15 O -0.514 6.514 16 C -0.001 4.001 17 O -0.313 6.313 18 C 0.008 3.992 19 C -0.165 4.165 20 C -0.125 4.125 21 C -0.075 4.075 22 C -0.135 4.135 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.147 4.147 26 C -0.152 4.152 27 H 0.115 0.885 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.131 0.869 40 H 0.155 0.845 41 H 0.158 0.842 42 H 0.166 0.834 43 H 0.163 0.837 44 H 0.156 0.844 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.505 3.796 -16.043 16.494 hybrid contribution -0.248 -0.696 0.626 0.969 sum -0.753 3.100 -15.417 15.744 Atomic orbital electron populations 1.22901 0.80557 1.03470 1.00233 1.88049 1.20529 1.27622 1.95319 1.22802 0.94321 0.84713 0.99519 1.21305 0.91480 0.97605 0.89924 1.43431 1.56824 1.07651 1.07634 1.19579 1.36999 0.82058 1.08227 0.88903 1.26172 0.92963 1.04058 0.96175 1.70036 1.28338 1.38489 1.16417 0.85045 0.77891 0.77838 0.78552 1.18084 1.20497 1.20831 1.20838 0.80844 0.86278 0.87351 1.90497 1.57774 1.16660 1.86493 1.21861 1.01985 0.90036 0.86261 1.87956 1.89119 1.34501 1.19772 1.21657 1.00101 0.95291 0.82140 1.23083 0.99105 0.98628 0.95646 1.21779 0.97646 0.97161 0.95943 1.19236 0.95736 0.95548 0.97019 1.21558 0.97404 0.99241 0.95333 1.21459 0.99682 0.94413 0.98752 1.21584 0.93764 0.99701 0.99316 1.21381 0.99309 0.98104 0.95857 1.21567 0.98876 0.95351 0.99412 0.88539 0.92974 0.94355 0.91378 0.95117 0.89150 0.92638 0.91933 0.89816 0.90105 0.90566 0.91305 0.86894 0.84479 0.84153 0.83432 0.83656 0.84370 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 11.01 113.37 1.25 1.98 16 2 O -0.40 -16.53 10.44 -148.98 -1.56 -18.09 16 3 C 0.06 2.70 6.24 71.98 0.45 3.15 16 4 C 0.12 5.98 5.27 86.38 0.45 6.44 16 5 N -0.44 -22.62 2.45 -635.54 -1.56 -24.18 16 6 C -0.34 -17.23 8.29 84.04 0.70 -16.54 16 7 H 0.09 4.44 7.21 -2.92 -0.02 4.42 16 8 C 0.01 0.47 4.95 84.93 0.42 0.89 16 9 N -0.90 -47.88 11.66 21.66 0.25 -47.63 16 10 Si 0.98 39.78 29.59 68.60 2.03 41.81 16 11 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 12 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 13 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 14 C 0.46 23.71 7.67 87.66 0.67 24.39 16 15 O -0.63 -36.03 16.17 15.97 0.26 -35.77 16 16 C 0.08 3.28 5.15 71.24 0.37 3.65 16 17 O -0.39 -16.20 9.86 -129.94 -1.28 -17.48 16 18 C 0.08 2.46 6.36 71.24 0.45 2.92 16 19 C -0.15 -3.99 9.31 24.53 0.23 -3.76 16 20 C -0.11 -2.52 9.51 23.65 0.22 -2.29 16 21 C -0.08 -1.73 5.87 -20.12 -0.12 -1.84 16 22 C -0.12 -2.20 9.79 22.52 0.22 -1.98 16 23 C -0.13 -1.99 10.03 22.23 0.22 -1.76 16 24 C -0.13 -2.01 10.04 22.32 0.22 -1.78 16 25 C -0.13 -2.41 10.03 22.23 0.22 -2.19 16 26 C -0.13 -3.06 9.40 22.52 0.21 -2.85 16 27 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 31 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.09 4.76 5.81 -2.39 -0.01 4.75 16 33 H 0.06 2.84 7.59 -2.39 -0.02 2.82 16 34 H 0.27 13.63 8.31 -92.70 -0.77 12.86 16 35 H 0.08 3.18 7.70 -2.38 -0.02 3.16 16 36 H 0.08 3.30 8.10 -2.39 -0.02 3.28 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.07 1.80 7.88 -2.39 -0.02 1.78 16 39 H 0.11 3.18 6.04 -2.91 -0.02 3.16 16 40 H 0.14 2.65 7.92 -2.91 -0.02 2.63 16 41 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 42 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 43 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 44 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 45 H 0.12 2.77 6.17 -2.91 -0.02 2.75 16 Total: -1.00 -69.47 384.22 5.31 -64.15 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 0.97 Total: 28.76 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 6.20 Total: 8.42 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -1.31 Total: -71.81 kcal Atomic # 8 Polarization: -68.77 SS G_CDS: -2.58 Total: -71.34 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -69.47 5.31 -64.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457200088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.242 kcal (2) G-P(sol) polarization free energy of solvation -69.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds