Wall clock time and date at job start Tue Mar 31 2020 12:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00057 * 2 1 4 4 C 1.53001 * 109.46872 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47313 * 64.99541 * 4 3 2 6 6 C 1.37090 * 120.00075 * 264.16538 * 5 4 3 7 7 H 1.07996 * 120.00225 * 135.94601 * 6 5 4 8 8 C 1.38954 * 120.00005 * 315.94048 * 6 5 4 9 9 N 1.31409 * 119.99863 * 2.67194 * 8 6 5 10 10 Si 1.86802 * 119.99950 * 182.66416 * 8 6 5 11 11 H 1.48500 * 109.46649 * 60.00541 * 10 8 6 12 12 H 1.48496 * 109.46926 * 180.02562 * 10 8 6 13 13 H 1.48490 * 109.47291 * 300.00727 * 10 8 6 14 14 C 1.34778 * 119.99763 * 84.16839 * 5 4 3 15 15 O 1.21293 * 119.99878 * 4.42771 * 14 5 4 16 16 C 1.50697 * 119.99845 * 184.43639 * 14 5 4 17 17 H 1.09000 * 109.24422 * 327.87515 * 16 14 5 18 18 C 1.52729 * 109.22531 * 87.32340 * 16 14 5 19 19 C 1.53332 * 108.38724 * 171.30471 * 18 16 14 20 20 C 1.52745 * 108.35702 * 290.11528 * 19 18 16 21 21 C 1.50619 * 110.58143 * 51.09001 * 20 19 18 22 22 C 1.39404 * 117.75119 * 162.49046 * 21 20 19 23 23 O 1.35895 * 119.78202 * 359.68588 * 22 21 20 24 24 C 1.38426 * 120.42820 * 179.66248 * 22 21 20 25 25 C 1.38176 * 119.70825 * 0.02562 * 24 22 21 26 26 C 1.37951 * 119.83346 * 0.10744 * 25 24 22 27 27 C 1.37578 * 122.59890 * 342.36702 * 21 20 19 28 28 H 1.09004 * 109.47341 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47411 * 300.00382 * 1 2 3 30 30 H 1.08999 * 109.47234 * 60.00202 * 1 2 3 31 31 H 1.08993 * 109.47253 * 59.99791 * 3 2 1 32 32 H 1.09006 * 109.46796 * 299.99722 * 3 2 1 33 33 H 1.09003 * 109.46922 * 304.99805 * 4 3 2 34 34 H 1.08999 * 109.46929 * 184.99530 * 4 3 2 35 35 H 0.96999 * 119.99994 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.67871 * 291.02768 * 18 16 14 37 37 H 1.09003 * 109.68050 * 51.58023 * 18 16 14 38 38 H 1.08997 * 109.68935 * 170.39509 * 19 18 16 39 39 H 1.09002 * 109.71943 * 49.84606 * 19 18 16 40 40 H 1.08996 * 109.24897 * 290.80060 * 20 19 18 41 41 H 1.08996 * 109.24801 * 171.37230 * 20 19 18 42 42 H 0.96701 * 114.00539 * 90.00110 * 23 22 21 43 43 H 1.08005 * 120.14480 * 180.02562 * 24 22 21 44 44 H 1.08003 * 120.08242 * 180.10968 * 25 24 22 45 45 H 1.08004 * 119.66622 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5642 -1.2527 6 6 4.2120 -0.7852 -1.3030 7 1 3.8514 -1.3658 -2.1392 8 6 4.9158 -1.4060 -0.2782 9 7 5.3091 -0.7096 0.7644 10 14 5.3025 -3.2306 -0.3826 11 1 6.1229 -3.4942 -1.5920 12 1 6.0558 -3.6469 0.8275 13 1 4.0359 -4.0011 -0.4661 14 6 4.1483 1.3202 -2.3551 15 8 4.0173 2.5243 -2.2912 16 6 4.5038 0.6694 -3.6669 17 1 5.1101 -0.2161 -3.4760 18 6 3.2219 0.2563 -4.3871 19 6 3.5888 -0.2006 -5.8040 20 6 4.0276 1.0234 -6.6056 21 6 5.0776 1.7995 -5.8547 22 6 5.8488 2.7115 -6.5736 23 8 5.6407 2.8677 -7.9074 24 6 6.8247 3.4593 -5.9376 25 6 7.0348 3.2991 -4.5813 26 6 6.2732 2.3944 -3.8710 27 6 5.2933 1.6406 -4.5052 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8514 0.5681 0.8410 34 1 3.9785 2.1764 0.0888 35 1 5.8000 -1.1430 1.4800 36 1 2.7462 -0.5635 -3.8487 37 1 2.5406 1.1056 -4.4401 38 1 2.7210 -0.6585 -6.2785 39 1 4.4052 -0.9214 -5.7582 40 1 3.1646 1.6650 -6.7831 41 1 4.4363 0.6986 -7.5624 42 1 4.9873 3.5460 -8.1269 43 1 7.4192 4.1649 -6.4990 44 1 7.7935 3.8807 -4.0786 45 1 6.4401 2.2710 -2.8111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457201863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:27 Heat of formation + Delta-G solvation = -101.830866 kcal Electronic energy + Delta-G solvation = -28256.585663 eV Core-core repulsion = 24432.105653 eV Total energy + Delta-G solvation = -3824.480011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.28100 -38.64486 -37.17176 -36.46246 -35.38316 -34.65001 -31.53910 -31.41540 -29.93395 -29.16126 -27.92053 -25.81213 -24.77183 -23.82172 -22.49365 -22.24500 -21.32710 -19.29256 -18.98623 -17.92815 -16.67051 -16.28450 -15.73478 -15.56891 -15.46157 -15.31505 -14.98956 -14.42165 -14.34399 -14.13022 -13.85859 -13.57423 -13.27374 -13.14085 -12.60043 -12.33199 -12.23183 -11.95249 -11.87030 -11.60508 -11.47977 -11.21431 -11.08442 -11.00285 -10.94906 -10.81242 -10.69266 -10.56139 -10.34198 -10.19479 -10.00308 -9.74861 -9.04636 -8.93992 -8.46473 -8.14383 -8.07881 -7.42498 -6.24345 -4.09748 1.64482 1.71843 3.17869 3.24047 3.25185 3.84916 3.95075 4.16057 4.48603 4.53971 4.80003 4.95565 5.03218 5.09942 5.31411 5.39418 5.46906 5.56849 5.67952 5.72577 5.73462 5.82515 5.87049 5.98362 5.99841 6.04719 6.10872 6.16216 6.18075 6.23795 6.31368 6.38391 6.45123 6.51534 6.57759 6.74026 6.76942 6.82493 6.88663 7.11477 7.20536 7.36849 7.61650 7.85819 7.87551 8.09972 8.43631 9.12884 9.53361 9.94957 10.72967 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013381 B = 0.004693 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.952920 B = 5965.261890 C = 6366.074749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.053 3.947 4 C 0.104 3.896 5 N -0.430 5.430 6 C -0.318 4.318 7 H 0.085 0.915 8 C 0.047 3.953 9 N -0.873 5.873 10 Si 0.918 3.082 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.482 3.518 15 O -0.601 6.601 16 C -0.059 4.059 17 H 0.111 0.889 18 C -0.103 4.103 19 C -0.117 4.117 20 C -0.072 4.072 21 C -0.101 4.101 22 C 0.087 3.913 23 O -0.500 6.500 24 C -0.152 4.152 25 C -0.115 4.115 26 C -0.091 4.091 27 C -0.028 4.028 28 H 0.077 0.923 29 H 0.029 0.971 30 H 0.030 0.970 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.134 0.866 34 H 0.064 0.936 35 H 0.269 0.731 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.382 0.618 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.143 2.753 -8.768 9.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C -0.025 4.025 4 C -0.020 4.020 5 N -0.147 5.147 6 C -0.446 4.446 7 H 0.103 0.897 8 C -0.157 4.157 9 N -0.511 5.511 10 Si 0.744 3.256 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.270 3.730 15 O -0.486 6.486 16 C -0.080 4.080 17 H 0.128 0.872 18 C -0.141 4.141 19 C -0.155 4.155 20 C -0.109 4.109 21 C -0.102 4.102 22 C 0.043 3.957 23 O -0.309 6.309 24 C -0.171 4.171 25 C -0.133 4.133 26 C -0.109 4.109 27 C -0.028 4.028 28 H 0.095 0.905 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.151 0.849 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.236 0.764 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.566 2.674 -8.551 9.320 hybrid contribution -0.437 -0.207 0.201 0.524 sum -3.003 2.466 -8.351 9.210 Atomic orbital electron populations 1.22636 0.83641 1.01636 0.98732 1.88143 1.17154 1.27832 1.95002 1.23062 0.97060 0.84121 0.98254 1.21777 0.88600 0.99297 0.92289 1.43292 1.56823 1.07323 1.07286 1.19279 1.33558 0.82837 1.08941 0.89702 1.25434 0.94967 0.99735 0.95552 1.69552 1.36761 1.36463 1.08369 0.86147 0.78750 0.82847 0.77832 1.19789 1.20957 1.19794 1.20182 0.80356 0.86497 0.85950 1.90539 1.57150 1.14652 1.86300 1.20031 0.96996 0.98207 0.92733 0.87159 1.21401 0.96315 1.01404 0.94952 1.21561 1.01159 0.97147 0.95589 1.20302 0.96328 0.96173 0.98129 1.19804 0.98141 0.99123 0.93118 1.18321 0.97066 0.97707 0.82612 1.84780 1.64424 1.61669 1.20006 1.21168 1.00099 1.00880 0.94938 1.20869 0.99946 0.98954 0.93510 1.21252 0.94434 0.94992 1.00249 1.19267 0.95313 0.96305 0.91928 0.90479 0.95238 0.95152 0.94509 0.94620 0.84858 0.91781 0.92016 0.90568 0.91999 0.91574 0.91401 0.91343 0.90693 0.76387 0.86179 0.86116 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.73 10.46 -35.23 -0.37 -8.10 16 3 C 0.05 1.11 6.24 37.16 0.23 1.34 16 4 C 0.10 2.47 5.29 -4.04 -0.02 2.45 16 5 N -0.43 -10.50 2.50 -114.81 -0.29 -10.78 16 6 C -0.32 -7.83 7.85 -14.94 -0.12 -7.95 16 7 H 0.09 2.01 6.50 -52.49 -0.34 1.67 16 8 C 0.05 1.18 5.36 -17.47 -0.09 1.08 16 9 N -0.87 -22.61 10.73 55.50 0.60 -22.02 16 10 Si 0.92 19.51 29.55 -169.99 -5.02 14.49 16 11 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 14 C 0.48 11.32 5.68 -10.99 -0.06 11.25 16 15 O -0.60 -15.30 14.94 5.55 0.08 -15.22 16 16 C -0.06 -1.18 1.85 -93.09 -0.17 -1.35 16 17 H 0.11 2.29 6.85 -51.93 -0.36 1.94 16 18 C -0.10 -1.78 5.20 -26.70 -0.14 -1.92 16 19 C -0.12 -1.66 5.98 -26.69 -0.16 -1.82 16 20 C -0.07 -1.02 5.28 -28.05 -0.15 -1.17 16 21 C -0.10 -1.70 5.75 -104.47 -0.60 -2.30 16 22 C 0.09 1.35 6.66 -39.08 -0.26 1.09 16 23 O -0.50 -6.50 12.53 -19.41 -0.24 -6.74 16 24 C -0.15 -2.31 9.98 -39.53 -0.39 -2.71 16 25 C -0.11 -1.88 10.04 -39.71 -0.40 -2.28 16 26 C -0.09 -1.76 8.32 -39.42 -0.33 -2.09 16 27 C -0.03 -0.53 5.11 -104.63 -0.53 -1.06 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.13 3.43 5.20 -51.93 -0.27 3.16 16 34 H 0.06 1.55 7.54 -51.93 -0.39 1.16 16 35 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 36 H 0.08 1.34 7.37 -51.93 -0.38 0.96 16 37 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.99 7.76 -51.93 -0.40 0.58 16 42 H 0.38 3.23 9.06 45.56 0.41 3.64 16 43 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 44 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 45 H 0.12 2.62 7.12 -52.48 -0.37 2.24 16 LS Contribution 362.64 15.07 5.46 5.46 Total: -1.00 -29.90 362.64 -7.75 -37.65 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -5.89 Total: 11.08 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -2.09 Total: -5.82 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.31 Total: -32.80 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.53 Total: -30.06 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.90 -7.75 -37.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457201863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.184 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds