Wall clock time and date at job start Tue Mar 31 2020 12:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99852 * 2 1 4 4 C 1.52998 * 109.47006 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47100 * 66.66796 * 4 3 2 6 6 C 1.37104 * 119.99530 * 270.59760 * 5 4 3 7 7 H 1.08001 * 120.00162 * 131.36603 * 6 5 4 8 8 C 1.38947 * 119.99811 * 311.35854 * 6 5 4 9 9 N 1.31414 * 119.99752 * 171.09280 * 8 6 5 10 10 Si 1.86799 * 120.00494 * 351.09788 * 8 6 5 11 11 H 1.48501 * 109.47559 * 93.00334 * 10 8 6 12 12 H 1.48491 * 109.47231 * 213.00889 * 10 8 6 13 13 H 1.48503 * 109.46514 * 333.00351 * 10 8 6 14 14 C 1.34771 * 120.00418 * 90.59258 * 5 4 3 15 15 O 1.21293 * 119.99803 * 355.84100 * 14 5 4 16 16 C 1.50696 * 120.00446 * 175.56033 * 14 5 4 17 17 H 1.09007 * 110.26402 * 42.20483 * 16 14 5 18 18 C 1.54339 * 110.30874 * 164.28026 * 16 14 5 19 19 C 1.54345 * 102.39401 * 92.55548 * 18 16 14 20 20 C 1.51390 * 105.17481 * 26.37166 * 19 18 16 21 21 C 1.38540 * 130.32342 * 162.77326 * 20 19 18 22 22 C 1.38005 * 120.29007 * 180.02562 * 21 20 19 23 23 C 1.38746 * 119.88166 * 0.02562 * 22 21 20 24 24 O 1.35897 * 120.09332 * 179.97438 * 23 22 21 25 25 C 1.42905 * 117.00013 * 0.02562 * 24 23 22 26 26 C 1.38591 * 119.81195 * 359.97438 * 23 22 21 27 27 C 1.38261 * 109.74041 * 342.80256 * 20 19 18 28 28 H 1.09000 * 109.46952 * 60.00828 * 1 2 3 29 29 H 1.09001 * 109.46930 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47262 * 300.00407 * 1 2 3 31 31 H 1.08996 * 109.47006 * 59.99711 * 3 2 1 32 32 H 1.08994 * 109.46937 * 299.99471 * 3 2 1 33 33 H 1.08994 * 109.47576 * 306.66848 * 4 3 2 34 34 H 1.08999 * 109.47023 * 186.66362 * 4 3 2 35 35 H 0.97001 * 120.00051 * 180.02562 * 9 8 6 36 36 H 1.08994 * 110.82647 * 210.78391 * 18 16 14 37 37 H 1.09005 * 110.81914 * 334.13461 * 18 16 14 38 38 H 1.08994 * 110.30047 * 145.30305 * 19 18 16 39 39 H 1.09000 * 110.30186 * 267.35157 * 19 18 16 40 40 H 1.08000 * 119.85516 * 0.03902 * 21 20 19 41 41 H 1.08003 * 120.05534 * 180.02562 * 22 21 20 42 42 H 1.09003 * 109.46829 * 180.02562 * 25 24 23 43 43 H 1.08995 * 109.47085 * 299.99975 * 25 24 23 44 44 H 1.08993 * 109.46971 * 60.00595 * 25 24 23 45 45 H 1.08001 * 119.91353 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9796 0.6006 -1.2674 6 6 4.0893 -0.7602 -1.3940 7 1 3.6539 -1.2601 -2.2466 8 6 4.7608 -1.4961 -0.4254 9 7 4.7178 -2.8093 -0.4508 10 14 5.7245 -0.6190 0.9130 11 1 4.8579 -0.4296 2.1039 12 1 6.9078 -1.4347 1.2864 13 1 6.1740 0.7049 0.4123 14 6 4.2801 1.4007 -2.3094 15 8 4.1112 2.5987 -2.2225 16 6 4.8320 0.8078 -3.5801 17 1 4.2969 -0.1075 -3.8332 18 6 4.7279 1.8258 -4.7355 19 6 6.0996 2.5313 -4.6801 20 6 7.0409 1.5194 -4.0621 21 6 8.4255 1.4706 -4.0550 22 6 9.0822 0.4367 -3.4191 23 6 8.3532 -0.5587 -2.7844 24 8 8.9955 -1.5790 -2.1573 25 6 10.4241 -1.5640 -2.1902 26 6 6.9682 -0.5095 -2.7918 27 6 6.3123 0.5289 -3.4301 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.8489 0.5444 0.8251 34 1 3.9781 2.1736 0.1199 35 1 5.1863 -3.3231 0.2256 36 1 4.5924 1.3166 -5.6896 37 1 3.9177 2.5329 -4.5571 38 1 6.4314 2.7924 -5.6849 39 1 6.0406 3.4244 -4.0579 40 1 8.9933 2.2451 -4.5490 41 1 10.1617 0.4026 -3.4155 42 1 10.8089 -2.4320 -1.6547 43 1 10.7641 -1.5961 -3.2252 44 1 10.7888 -0.6530 -1.7159 45 1 6.3991 -1.2837 -2.2986 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457202362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:18 Heat of formation + Delta-G solvation = -75.614040 kcal Electronic energy + Delta-G solvation = -28533.859848 eV Core-core repulsion = 24710.516684 eV Total energy + Delta-G solvation = -3823.343164 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.30285 -39.03859 -37.79888 -36.89310 -34.96035 -33.99322 -31.94898 -31.07146 -29.53374 -28.13846 -27.76170 -26.21283 -25.75828 -24.56231 -22.73885 -22.28074 -20.72143 -20.31939 -18.80002 -17.63425 -16.58738 -16.49223 -15.91147 -15.75101 -15.50865 -15.37413 -14.91219 -14.67473 -14.49832 -14.25787 -14.15977 -13.56956 -13.26627 -13.05376 -12.65860 -12.48072 -12.38453 -12.21994 -11.79194 -11.63938 -11.63293 -11.44711 -11.18704 -11.11151 -10.89679 -10.84323 -10.78310 -10.58252 -10.24442 -10.15840 -9.92909 -9.85347 -9.16323 -9.07170 -8.75669 -8.09308 -7.65020 -7.51657 -6.31108 -4.05591 1.79159 1.92990 3.14423 3.29771 3.35256 3.56659 3.74827 4.16924 4.24002 4.38049 4.50339 4.92219 5.06047 5.17416 5.17917 5.29902 5.38878 5.41757 5.56157 5.59537 5.61940 5.68300 5.75800 5.81606 5.85282 5.88500 5.95791 6.03762 6.04134 6.08885 6.18803 6.32278 6.36954 6.40079 6.45847 6.50281 6.62105 6.73974 6.83004 6.89465 7.19732 7.33402 7.48793 7.80753 7.87983 8.18711 8.33636 9.05836 9.38480 9.71583 10.78231 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012899 B = 0.006264 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.120743 B = 4468.897821 C = 5939.612888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.057 3.943 4 C 0.100 3.900 5 N -0.457 5.457 6 C -0.324 4.324 7 H 0.101 0.899 8 C 0.080 3.920 9 N -0.864 5.864 10 Si 0.868 3.132 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.262 1.262 14 C 0.500 3.500 15 O -0.595 6.595 16 C -0.052 4.052 17 H 0.105 0.895 18 C -0.105 4.105 19 C -0.070 4.070 20 C -0.131 4.131 21 C -0.083 4.083 22 C -0.212 4.212 23 C 0.113 3.887 24 O -0.313 6.313 25 C 0.030 3.970 26 C -0.116 4.116 27 C -0.026 4.026 28 H 0.032 0.968 29 H 0.080 0.920 30 H 0.029 0.971 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.273 0.727 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.095 0.905 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.175 5.168 -4.428 7.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C -0.021 4.021 4 C -0.023 4.023 5 N -0.177 5.177 6 C -0.452 4.452 7 H 0.118 0.882 8 C -0.127 4.127 9 N -0.500 5.500 10 Si 0.697 3.303 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.187 1.187 14 C 0.289 3.711 15 O -0.480 6.480 16 C -0.073 4.073 17 H 0.123 0.877 18 C -0.143 4.143 19 C -0.107 4.107 20 C -0.132 4.132 21 C -0.101 4.101 22 C -0.231 4.231 23 C 0.068 3.932 24 O -0.227 6.227 25 C -0.066 4.066 26 C -0.134 4.134 27 C -0.027 4.027 28 H 0.051 0.949 29 H 0.099 0.901 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.113 0.887 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.177 5.216 -4.164 7.874 hybrid contribution 0.584 0.432 0.991 1.229 sum 4.761 5.648 -3.173 8.040 Atomic orbital electron populations 1.22654 0.83052 1.02063 0.98734 1.88204 1.17663 1.26772 1.95014 1.22857 0.95000 0.85074 0.99183 1.21740 0.92084 0.99078 0.89362 1.43592 1.57673 1.07001 1.09389 1.18855 1.35330 0.79033 1.11981 0.88199 1.25279 0.95240 0.94966 0.97230 1.69644 1.40638 1.04868 1.34837 0.87022 0.80038 0.80845 0.82426 1.20334 1.21312 1.18655 1.20174 0.79128 0.85823 0.85945 1.90511 1.58532 1.15371 1.83554 1.20511 0.92764 1.00093 0.93934 0.87687 1.22199 0.97775 0.97604 0.96678 1.20905 0.92955 0.97241 0.99558 1.20596 0.93355 0.97658 1.01562 1.20182 0.92845 0.97629 0.99479 1.20986 0.99309 0.97460 1.05319 1.18880 0.92128 0.87981 0.94190 1.86138 1.19992 1.44640 1.71904 1.22966 0.79400 1.02689 1.01513 1.20474 0.90812 1.00940 1.01184 1.19833 0.94133 0.93283 0.95450 0.94894 0.90107 0.95228 0.94116 0.93284 0.91112 0.90068 0.91625 0.91219 0.89709 0.91654 0.90158 0.86621 0.86048 0.88691 0.93029 0.93153 0.82512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.61 10.22 -35.23 -0.36 -7.97 16 3 C 0.06 1.13 6.27 37.16 0.23 1.36 16 4 C 0.10 2.26 4.47 -4.04 -0.02 2.24 16 5 N -0.46 -10.97 2.03 -114.81 -0.23 -11.21 16 6 C -0.32 -8.33 6.87 -14.93 -0.10 -8.43 16 7 H 0.10 2.73 7.26 -52.49 -0.38 2.35 16 8 C 0.08 2.12 4.15 -17.47 -0.07 2.05 16 9 N -0.86 -23.98 13.96 55.50 0.77 -23.21 16 10 Si 0.87 21.50 24.81 -169.99 -4.22 17.28 16 11 H -0.28 -6.65 6.82 56.52 0.39 -6.26 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.26 -6.62 7.03 56.52 0.40 -6.22 16 14 C 0.50 11.55 6.83 -10.99 -0.08 11.47 16 15 O -0.59 -14.33 15.29 5.55 0.08 -14.25 16 16 C -0.05 -1.05 2.50 -91.89 -0.23 -1.28 16 17 H 0.11 2.14 6.96 -51.93 -0.36 1.78 16 18 C -0.10 -1.75 6.28 -25.32 -0.16 -1.91 16 19 C -0.07 -1.12 6.69 -26.84 -0.18 -1.29 16 20 C -0.13 -2.37 6.14 -104.16 -0.64 -3.01 16 21 C -0.08 -1.35 10.03 -39.56 -0.40 -1.74 16 22 C -0.21 -3.48 9.04 -39.48 -0.36 -3.84 16 23 C 0.11 2.19 6.68 -39.26 -0.26 1.93 16 24 O -0.31 -5.87 10.50 -19.42 -0.20 -6.07 16 25 C 0.03 0.38 9.81 101.05 0.99 1.37 16 26 C -0.12 -2.52 9.54 -39.39 -0.38 -2.89 16 27 C -0.03 -0.54 5.34 -104.22 -0.56 -1.10 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.67 3.71 -51.93 -0.19 1.48 16 34 H 0.08 1.76 7.46 -51.93 -0.39 1.38 16 35 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.45 7.28 -51.93 -0.38 1.07 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.12 1.60 6.31 -52.48 -0.33 1.27 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 44 H 0.05 0.58 7.67 -51.93 -0.40 0.18 16 45 H 0.16 3.84 5.60 -52.49 -0.29 3.54 16 LS Contribution 358.97 15.07 5.41 5.41 Total: -1.00 -30.99 358.97 -6.34 -37.33 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -6.50 Total: 6.13 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -1.09 Total: -3.44 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.54 Total: -34.41 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.48 Total: -28.29 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.22 Total: 17.28 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.99 -6.34 -37.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457202362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.284 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds