Wall clock time and date at job start Tue Mar 31 2020 12:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99857 * 2 1 4 4 C 1.53004 * 109.46931 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46925 * 64.99925 * 4 3 2 6 6 C 1.37095 * 120.00057 * 264.44017 * 5 4 3 7 7 H 1.08003 * 120.00094 * 46.65878 * 6 5 4 8 8 C 1.38953 * 120.00122 * 226.65719 * 6 5 4 9 9 N 1.31407 * 119.99835 * 30.06064 * 8 6 5 10 10 Si 1.86801 * 119.99853 * 210.05885 * 8 6 5 11 11 H 1.48503 * 109.47017 * 60.00277 * 10 8 6 12 12 H 1.48500 * 109.46753 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47220 * 299.99996 * 10 8 6 14 14 C 1.34776 * 119.99754 * 84.44576 * 5 4 3 15 15 O 1.21300 * 119.99680 * 185.11519 * 14 5 4 16 16 C 1.50697 * 120.00464 * 5.11289 * 14 5 4 17 17 H 1.09011 * 110.26706 * 13.28419 * 16 14 5 18 18 C 1.54337 * 110.30530 * 251.21062 * 16 14 5 19 19 C 1.54341 * 102.39601 * 267.43964 * 18 16 14 20 20 C 1.51395 * 105.17599 * 333.63636 * 19 18 16 21 21 C 1.38544 * 130.32050 * 197.19899 * 20 19 18 22 22 C 1.38004 * 120.28838 * 179.97438 * 21 20 19 23 23 C 1.38752 * 119.88145 * 359.97438 * 22 21 20 24 24 O 1.35895 * 120.09543 * 180.02562 * 23 22 21 25 25 C 1.42902 * 116.99939 * 359.97438 * 24 23 22 26 26 C 1.38602 * 119.80957 * 0.02562 * 23 22 21 27 27 C 1.38259 * 109.73732 * 17.44430 * 20 19 18 28 28 H 1.09009 * 109.46948 * 299.99955 * 1 2 3 29 29 H 1.09003 * 109.47424 * 59.99634 * 1 2 3 30 30 H 1.08992 * 109.47205 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47405 * 60.00470 * 3 2 1 32 32 H 1.09004 * 109.47226 * 299.99709 * 3 2 1 33 33 H 1.09000 * 109.47168 * 304.99797 * 4 3 2 34 34 H 1.08998 * 109.47182 * 185.00185 * 4 3 2 35 35 H 0.97004 * 120.00128 * 184.93402 * 9 8 6 36 36 H 1.09005 * 110.82035 * 149.21652 * 18 16 14 37 37 H 1.09003 * 110.99316 * 25.74369 * 18 16 14 38 38 H 1.09005 * 110.30031 * 214.71172 * 19 18 16 39 39 H 1.09000 * 110.38683 * 92.60036 * 19 18 16 40 40 H 1.07996 * 119.85791 * 0.02562 * 21 20 19 41 41 H 1.07998 * 120.06367 * 179.97438 * 22 21 20 42 42 H 1.08998 * 109.46998 * 300.00401 * 25 24 23 43 43 H 1.08990 * 109.47107 * 60.00181 * 25 24 23 44 44 H 1.09005 * 109.46976 * 180.02562 * 25 24 23 45 45 H 1.08004 * 119.90623 * 180.02562 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.2066 -0.7860 -1.3047 7 1 3.4887 -1.4733 -0.8820 8 6 5.3644 -1.2704 -1.9011 9 7 6.4636 -0.5506 -1.8825 10 14 5.3581 -2.9449 -2.7291 11 1 4.3594 -2.9499 -3.8281 12 1 6.7061 -3.2273 -3.2847 13 1 5.0040 -3.9881 -1.7335 14 6 4.1536 1.3213 -2.3536 15 8 4.4275 0.7968 -3.4124 16 6 4.0121 2.8192 -2.2691 17 1 3.9998 3.1392 -1.2270 18 6 2.7236 3.2768 -2.9849 19 6 3.2281 3.5841 -4.4108 20 6 4.6913 3.9360 -4.2463 21 6 5.5585 4.5894 -5.1068 22 6 6.8716 4.8045 -4.7409 23 6 7.3258 4.3652 -3.5056 24 8 8.6179 4.5751 -3.1406 25 6 9.4547 5.2549 -4.0786 26 6 6.4580 3.7115 -2.6450 27 6 5.1432 3.4914 -3.0176 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8515 0.5682 0.8409 34 1 3.9785 2.1764 0.0890 35 1 7.2512 -0.8556 -2.3597 36 1 2.3173 4.1731 -2.5162 37 1 1.9810 2.4789 -3.0002 38 1 2.6812 4.4278 -4.8319 39 1 3.1196 2.7072 -5.0492 40 1 5.2051 4.9327 -6.0679 41 1 7.5446 5.3139 -5.4147 42 1 9.5014 4.6828 -5.0051 43 1 9.0437 6.2435 -4.2824 44 1 10.4576 5.3565 -3.6637 45 1 6.8098 3.3693 -1.6830 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457202364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:23 Heat of formation + Delta-G solvation = -73.681188 kcal Electronic energy + Delta-G solvation = -28096.895419 eV Core-core repulsion = 24273.636070 eV Total energy + Delta-G solvation = -3823.259349 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.31698 -38.95329 -37.70790 -36.89647 -34.43695 -33.92791 -31.95566 -31.05158 -28.79549 -28.29408 -28.07590 -26.38831 -25.85669 -24.32811 -22.49295 -22.27305 -21.08331 -20.43949 -18.80205 -17.29147 -16.79707 -16.24847 -15.97995 -15.80259 -15.50721 -15.17362 -14.98555 -14.70472 -14.43754 -14.26977 -13.85664 -13.58463 -13.16223 -13.13736 -12.86264 -12.45998 -12.27471 -11.88985 -11.74681 -11.66785 -11.43677 -11.34561 -11.17936 -11.11400 -10.95336 -10.85909 -10.73504 -10.45870 -10.36895 -10.29442 -10.18504 -10.05155 -9.19954 -8.62155 -8.39723 -7.95744 -7.59626 -7.08288 -6.07251 -3.72648 1.73322 1.84714 3.42166 3.47970 3.50119 3.58233 4.03639 4.19791 4.30934 4.45344 4.79245 5.00063 5.03738 5.09601 5.21334 5.27165 5.32157 5.36681 5.38543 5.50354 5.50911 5.57936 5.67512 5.69009 5.74594 5.78389 5.87875 5.90290 5.95501 6.01320 6.07110 6.16991 6.24419 6.25760 6.30097 6.48557 6.60892 6.66352 6.68984 6.74652 7.10945 7.14435 7.66603 7.72605 7.83070 8.43694 9.15512 9.27561 9.74584 10.33732 10.99584 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011739 B = 0.005157 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.548257 B = 5428.541001 C = 6711.714671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.046 3.954 4 C 0.100 3.900 5 N -0.440 5.440 6 C -0.342 4.342 7 H 0.083 0.917 8 C 0.084 3.916 9 N -0.835 5.835 10 Si 0.898 3.102 11 H -0.274 1.274 12 H -0.290 1.290 13 H -0.278 1.278 14 C 0.496 3.504 15 O -0.543 6.543 16 C -0.077 4.077 17 H 0.089 0.911 18 C -0.102 4.102 19 C -0.070 4.070 20 C -0.118 4.118 21 C -0.077 4.077 22 C -0.212 4.212 23 C 0.120 3.880 24 O -0.318 6.318 25 C 0.031 3.969 26 C -0.121 4.121 27 C -0.020 4.020 28 H 0.031 0.969 29 H 0.034 0.966 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.263 0.737 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.095 0.905 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.152 13.165 -0.589 13.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.032 4.032 4 C -0.025 4.025 5 N -0.162 5.162 6 C -0.468 4.468 7 H 0.100 0.900 8 C -0.126 4.126 9 N -0.468 5.468 10 Si 0.724 3.276 11 H -0.200 1.200 12 H -0.216 1.216 13 H -0.204 1.204 14 C 0.283 3.717 15 O -0.422 6.422 16 C -0.099 4.099 17 H 0.107 0.893 18 C -0.140 4.140 19 C -0.107 4.107 20 C -0.119 4.119 21 C -0.095 4.095 22 C -0.230 4.230 23 C 0.076 3.924 24 O -0.231 6.231 25 C -0.065 4.065 26 C -0.140 4.140 27 C -0.021 4.021 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.135 0.865 41 H 0.141 0.859 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.114 0.886 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.565 12.631 -0.935 13.158 hybrid contribution 0.094 -0.394 -0.664 0.777 sum -3.471 12.237 -1.599 12.820 Atomic orbital electron populations 1.22667 0.82833 1.02099 0.98952 1.88105 1.17934 1.27418 1.95058 1.23196 0.96142 0.84919 0.98917 1.21673 0.90628 0.98483 0.91711 1.43175 1.60750 1.07296 1.04935 1.18887 1.03403 0.80427 1.44035 0.89972 1.25159 0.93441 0.98065 0.95959 1.70023 1.00493 1.40594 1.35675 0.86525 0.77054 0.83534 0.80451 1.19966 1.21633 1.20417 1.19574 0.81494 0.85924 0.84728 1.90516 1.49735 1.73274 1.28690 1.20982 0.92952 0.96178 0.99786 0.89338 1.22170 0.96028 1.00741 0.95100 1.20915 0.91049 1.01090 0.97658 1.20441 0.96541 0.99982 0.94915 1.20224 0.92292 0.98519 0.98500 1.20945 0.97220 1.07987 0.96883 1.18698 0.83485 0.96875 0.93370 1.86066 1.19018 1.74160 1.43885 1.22968 0.94164 0.95956 0.93387 1.19783 0.91651 1.01712 1.00833 1.19863 0.92887 0.94269 0.95051 0.95007 0.94723 0.90218 0.93969 0.93759 0.90069 0.91248 0.92677 0.91012 0.90459 0.91550 0.89808 0.86491 0.85932 0.92912 0.93055 0.88650 0.85410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.88 10.28 -35.23 -0.36 -7.24 16 3 C 0.05 0.77 6.24 37.16 0.23 1.00 16 4 C 0.10 1.96 5.53 -4.04 -0.02 1.94 16 5 N -0.44 -11.03 2.45 -114.81 -0.28 -11.31 16 6 C -0.34 -9.66 8.76 -14.93 -0.13 -9.79 16 7 H 0.08 2.34 7.83 -52.48 -0.41 1.93 16 8 C 0.08 2.44 4.05 -17.47 -0.07 2.37 16 9 N -0.83 -25.18 13.02 55.50 0.72 -24.46 16 10 Si 0.90 23.10 29.65 -169.99 -5.04 18.06 16 11 H -0.27 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 14 C 0.50 12.41 5.80 -10.99 -0.06 12.34 16 15 O -0.54 -15.98 15.28 5.54 0.08 -15.90 16 16 C -0.08 -1.51 2.78 -91.89 -0.26 -1.76 16 17 H 0.09 1.54 5.55 -51.92 -0.29 1.26 16 18 C -0.10 -1.63 6.05 -25.33 -0.15 -1.79 16 19 C -0.07 -1.13 6.67 -26.84 -0.18 -1.31 16 20 C -0.12 -2.14 6.14 -104.16 -0.64 -2.78 16 21 C -0.08 -1.24 10.03 -39.55 -0.40 -1.64 16 22 C -0.21 -3.36 9.04 -39.48 -0.36 -3.72 16 23 C 0.12 2.18 6.68 -39.26 -0.26 1.92 16 24 O -0.32 -5.30 10.50 -19.41 -0.20 -5.50 16 25 C 0.03 0.35 9.81 101.05 0.99 1.34 16 26 C -0.12 -2.45 9.98 -39.38 -0.39 -2.84 16 27 C -0.02 -0.40 5.11 -104.22 -0.53 -0.93 16 28 H 0.03 0.37 8.14 -51.92 -0.42 -0.06 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.04 0.71 6.91 -51.93 -0.36 0.36 16 33 H 0.08 1.65 8.00 -51.93 -0.42 1.23 16 34 H 0.07 1.20 5.88 -51.93 -0.31 0.89 16 35 H 0.26 7.75 8.32 -40.82 -0.34 7.41 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 1.27 7.37 -51.93 -0.38 0.89 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.12 1.55 6.31 -52.49 -0.33 1.22 16 42 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 43 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 44 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.13 2.65 8.06 -52.48 -0.42 2.23 16 LS Contribution 368.90 15.07 5.56 5.56 Total: -1.00 -35.99 368.90 -7.29 -43.28 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.65 Total: 1.60 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -1.12 Total: -4.09 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.44 Total: -35.77 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.48 Total: -28.64 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.04 Total: 18.06 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.99 -7.29 -43.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457202364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.403 kcal (2) G-P(sol) polarization free energy of solvation -35.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds