Wall clock time and date at job start Tue Mar 31 2020 12:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99857 * 2 1 4 4 C 1.53004 * 109.46931 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46925 * 64.99925 * 4 3 2 6 6 C 1.37095 * 120.00057 * 264.44017 * 5 4 3 7 7 H 1.08003 * 120.00094 * 46.65878 * 6 5 4 8 8 C 1.38953 * 120.00122 * 226.65719 * 6 5 4 9 9 N 1.31407 * 119.99835 * 30.06064 * 8 6 5 10 10 Si 1.86801 * 119.99853 * 210.05885 * 8 6 5 11 11 H 1.48503 * 109.47017 * 60.00277 * 10 8 6 12 12 H 1.48500 * 109.46753 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47220 * 299.99996 * 10 8 6 14 14 C 1.34776 * 119.99754 * 84.44576 * 5 4 3 15 15 O 1.21300 * 119.99680 * 185.11519 * 14 5 4 16 16 C 1.50697 * 120.00464 * 5.11289 * 14 5 4 17 17 H 1.09011 * 110.26706 * 13.28419 * 16 14 5 18 18 C 1.54337 * 110.30530 * 251.21062 * 16 14 5 19 19 C 1.54341 * 102.39601 * 267.43964 * 18 16 14 20 20 C 1.51395 * 105.17599 * 333.63636 * 19 18 16 21 21 C 1.38544 * 130.32050 * 197.19899 * 20 19 18 22 22 C 1.38004 * 120.28838 * 179.97438 * 21 20 19 23 23 C 1.38752 * 119.88145 * 359.97438 * 22 21 20 24 24 O 1.35895 * 120.09543 * 180.02562 * 23 22 21 25 25 C 1.42902 * 116.99939 * 359.97438 * 24 23 22 26 26 C 1.38602 * 119.80957 * 0.02562 * 23 22 21 27 27 C 1.38259 * 109.73732 * 17.44430 * 20 19 18 28 28 H 1.09009 * 109.46948 * 299.99955 * 1 2 3 29 29 H 1.09003 * 109.47424 * 59.99634 * 1 2 3 30 30 H 1.08992 * 109.47205 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47405 * 60.00470 * 3 2 1 32 32 H 1.09004 * 109.47226 * 299.99709 * 3 2 1 33 33 H 1.09000 * 109.47168 * 304.99797 * 4 3 2 34 34 H 1.08998 * 109.47182 * 185.00185 * 4 3 2 35 35 H 0.97004 * 120.00128 * 184.93402 * 9 8 6 36 36 H 1.09005 * 110.82035 * 149.21652 * 18 16 14 37 37 H 1.09003 * 110.99316 * 25.74369 * 18 16 14 38 38 H 1.09005 * 110.30031 * 214.71172 * 19 18 16 39 39 H 1.09000 * 110.38683 * 92.60036 * 19 18 16 40 40 H 1.07996 * 119.85791 * 0.02562 * 21 20 19 41 41 H 1.07998 * 120.06367 * 179.97438 * 22 21 20 42 42 H 1.08998 * 109.46998 * 300.00401 * 25 24 23 43 43 H 1.08990 * 109.47107 * 60.00181 * 25 24 23 44 44 H 1.09005 * 109.46976 * 180.02562 * 25 24 23 45 45 H 1.08004 * 119.90623 * 180.02562 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.2066 -0.7860 -1.3047 7 1 3.4887 -1.4733 -0.8820 8 6 5.3644 -1.2704 -1.9011 9 7 6.4636 -0.5506 -1.8825 10 14 5.3581 -2.9449 -2.7291 11 1 4.3594 -2.9499 -3.8281 12 1 6.7061 -3.2273 -3.2847 13 1 5.0040 -3.9881 -1.7335 14 6 4.1536 1.3213 -2.3536 15 8 4.4275 0.7968 -3.4124 16 6 4.0121 2.8192 -2.2691 17 1 3.9998 3.1392 -1.2270 18 6 2.7236 3.2768 -2.9849 19 6 3.2281 3.5841 -4.4108 20 6 4.6913 3.9360 -4.2463 21 6 5.5585 4.5894 -5.1068 22 6 6.8716 4.8045 -4.7409 23 6 7.3258 4.3652 -3.5056 24 8 8.6179 4.5751 -3.1406 25 6 9.4547 5.2549 -4.0786 26 6 6.4580 3.7115 -2.6450 27 6 5.1432 3.4914 -3.0176 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8515 0.5682 0.8409 34 1 3.9785 2.1764 0.0890 35 1 7.2512 -0.8556 -2.3597 36 1 2.3173 4.1731 -2.5162 37 1 1.9810 2.4789 -3.0002 38 1 2.6812 4.4278 -4.8319 39 1 3.1196 2.7072 -5.0492 40 1 5.2051 4.9327 -6.0679 41 1 7.5446 5.3139 -5.4147 42 1 9.5014 4.6828 -5.0051 43 1 9.0437 6.2435 -4.2824 44 1 10.4576 5.3565 -3.6637 45 1 6.8098 3.3693 -1.6830 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457202364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:22 Heat of formation + Delta-G solvation = -97.608451 kcal Electronic energy + Delta-G solvation = -28097.932983 eV Core-core repulsion = 24273.636070 eV Total energy + Delta-G solvation = -3824.296913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.72388 -40.43826 -39.09943 -38.39172 -36.09502 -35.54958 -33.98689 -32.41360 -30.40472 -29.64549 -29.30113 -27.65018 -27.07837 -26.20525 -23.87923 -23.73755 -22.64869 -21.71570 -20.49546 -18.89206 -18.36586 -17.85143 -17.30697 -17.17055 -16.83326 -16.59242 -16.38674 -16.30832 -15.91653 -15.87388 -15.25643 -15.23120 -14.84528 -14.36659 -14.22044 -13.92374 -13.65221 -13.46435 -13.16637 -13.04413 -12.98690 -12.83648 -12.66860 -12.60146 -12.52896 -12.42202 -12.22607 -12.17036 -12.01568 -11.73502 -11.62220 -11.50227 -10.64286 -10.42634 -10.19399 -9.66165 -9.15341 -8.89202 -8.25558 -5.93650 0.37099 0.50094 1.32683 1.41678 1.47570 2.20528 2.36428 2.44920 2.76263 3.03940 3.12329 3.32418 3.52868 3.70249 3.95695 4.01625 4.09217 4.21040 4.32533 4.33723 4.38481 4.39544 4.44664 4.48294 4.56616 4.57291 4.63338 4.64610 4.69480 4.72368 4.80032 4.86243 4.90554 4.93405 4.98378 5.13042 5.19886 5.31164 5.35472 5.42211 5.57003 5.77052 5.84896 6.28369 6.45993 6.50345 7.06628 7.23381 7.71942 8.34699 8.78966 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011739 B = 0.005157 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.548257 B = 5428.541001 C = 6711.714671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.053 3.947 4 C 0.095 3.905 5 N -0.457 5.457 6 C -0.348 4.348 7 H 0.073 0.927 8 C 0.038 3.962 9 N -0.869 5.869 10 Si 0.947 3.053 11 H -0.288 1.288 12 H -0.289 1.289 13 H -0.257 1.257 14 C 0.490 3.510 15 O -0.599 6.599 16 C -0.072 4.072 17 H 0.104 0.896 18 C -0.095 4.095 19 C -0.067 4.067 20 C -0.131 4.131 21 C -0.075 4.075 22 C -0.205 4.205 23 C 0.112 3.888 24 O -0.342 6.342 25 C 0.019 3.981 26 C -0.156 4.156 27 C -0.049 4.049 28 H 0.059 0.941 29 H 0.041 0.959 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.257 0.743 36 H 0.115 0.885 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.058 0.942 40 H 0.155 0.845 41 H 0.160 0.840 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.118 0.882 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.493 15.592 -1.334 16.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.329 6.329 3 C -0.025 4.025 4 C -0.029 4.029 5 N -0.178 5.178 6 C -0.475 4.475 7 H 0.091 0.909 8 C -0.168 4.168 9 N -0.504 5.504 10 Si 0.773 3.227 11 H -0.214 1.214 12 H -0.215 1.215 13 H -0.181 1.181 14 C 0.279 3.721 15 O -0.481 6.481 16 C -0.093 4.093 17 H 0.122 0.878 18 C -0.132 4.132 19 C -0.104 4.104 20 C -0.132 4.132 21 C -0.092 4.092 22 C -0.223 4.223 23 C 0.067 3.933 24 O -0.257 6.257 25 C -0.075 4.075 26 C -0.175 4.175 27 C -0.049 4.049 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.066 0.934 36 H 0.133 0.867 37 H 0.087 0.913 38 H 0.126 0.874 39 H 0.076 0.924 40 H 0.172 0.828 41 H 0.177 0.823 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.136 0.864 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.928 15.060 -1.633 15.930 hybrid contribution 0.524 -1.087 -0.409 1.274 sum -4.404 13.973 -2.041 14.792 Atomic orbital electron populations 1.22858 0.80371 1.03086 1.00599 1.88037 1.20758 1.28706 1.95443 1.23116 0.93377 0.84780 1.01178 1.21874 0.93400 0.98839 0.88748 1.43419 1.60731 1.06674 1.06969 1.18987 1.02631 0.82379 1.43460 0.90939 1.25855 0.93364 1.00936 0.96689 1.70111 1.00796 1.42379 1.37102 0.85737 0.76498 0.80980 0.79519 1.21409 1.21490 1.18101 1.20465 0.79581 0.88301 0.83756 1.90461 1.51956 1.75001 1.30700 1.20958 0.95141 0.91781 1.01460 0.87817 1.22247 0.93915 1.02106 0.94964 1.20935 0.90498 1.01531 0.97462 1.20806 0.97831 1.00114 0.94402 1.20710 0.92005 0.97093 0.99439 1.21359 0.97829 1.06911 0.96196 1.18840 0.83945 0.96658 0.93888 1.86036 1.18813 1.74848 1.45996 1.23348 0.94488 0.96630 0.93017 1.19850 0.92873 1.03935 1.00855 1.20035 0.92907 0.95479 0.96515 0.92256 0.94012 0.89751 0.89800 0.93075 0.91459 0.88986 0.93426 0.86674 0.91254 0.87394 0.92369 0.82778 0.82283 0.92262 0.90785 0.86418 0.88004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 16 2 O -0.41 -15.02 10.28 -148.98 -1.53 -16.55 16 3 C 0.05 1.67 6.24 71.98 0.45 2.12 16 4 C 0.09 3.74 5.53 86.38 0.48 4.22 16 5 N -0.46 -23.53 2.45 -635.52 -1.55 -25.08 16 6 C -0.35 -20.35 8.76 84.04 0.74 -19.61 16 7 H 0.07 4.28 7.83 -2.91 -0.02 4.26 16 8 C 0.04 2.28 4.05 84.93 0.34 2.62 16 9 N -0.87 -54.87 13.02 21.66 0.28 -54.59 16 10 Si 0.95 49.01 29.65 68.60 2.03 51.04 16 11 H -0.29 -15.37 7.11 99.48 0.71 -14.67 16 12 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 13 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 14 C 0.49 25.19 5.80 87.66 0.51 25.70 16 15 O -0.60 -36.66 15.28 -3.09 -0.05 -36.70 16 16 C -0.07 -2.80 2.78 -11.62 -0.03 -2.83 16 17 H 0.10 3.56 5.55 -2.38 -0.01 3.54 16 18 C -0.09 -2.82 6.05 31.50 0.19 -2.63 16 19 C -0.07 -2.04 6.67 30.52 0.20 -1.83 16 20 C -0.13 -4.55 6.14 -19.57 -0.12 -4.67 16 21 C -0.07 -2.20 10.03 22.29 0.22 -1.98 16 22 C -0.20 -6.02 9.04 22.34 0.20 -5.82 16 23 C 0.11 4.03 6.68 22.48 0.15 4.18 16 24 O -0.34 -11.37 10.50 -92.37 -0.97 -12.34 16 25 C 0.02 0.39 9.81 113.37 1.11 1.51 16 26 C -0.16 -6.56 9.98 22.40 0.22 -6.34 16 27 C -0.05 -1.97 5.11 -19.60 -0.10 -2.07 16 28 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.05 1.54 6.91 -2.38 -0.02 1.52 16 33 H 0.07 2.80 8.00 -2.39 -0.02 2.78 16 34 H 0.09 3.14 5.88 -2.39 -0.01 3.13 16 35 H 0.26 15.89 8.32 -92.71 -0.77 15.11 16 36 H 0.11 2.44 8.14 -2.38 -0.02 2.42 16 37 H 0.07 2.17 7.37 -2.39 -0.02 2.16 16 38 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 39 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 41 H 0.16 3.40 6.31 -2.91 -0.02 3.38 16 42 H 0.06 1.13 7.66 -2.39 -0.02 1.11 16 43 H 0.07 1.18 7.66 -2.39 -0.02 1.16 16 44 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 45 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -84.24 368.90 5.02 -79.22 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.99 Total: 20.51 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 5.82 Total: -5.50 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -1.27 Total: -79.67 kcal Atomic # 8 Polarization: -63.05 SS G_CDS: -2.55 Total: -65.60 kcal Atomic # 14 Polarization: 49.01 SS G_CDS: 2.03 Total: 51.04 kcal Total: -84.24 5.02 -79.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457202364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.391 kcal (2) G-P(sol) polarization free energy of solvation -84.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds