Wall clock time and date at job start Tue Mar 31 2020 12:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00220 * 2 1 4 4 C 1.53001 * 109.47500 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47099 * 64.99513 * 4 3 2 6 6 C 1.36865 * 120.00223 * 262.73480 * 5 4 3 7 7 H 1.08004 * 120.00410 * 138.92960 * 6 5 4 8 8 C 1.39053 * 120.00007 * 318.92473 * 6 5 4 9 9 N 1.31359 * 120.00389 * 342.59821 * 8 6 5 10 10 Si 1.86800 * 119.99882 * 162.59404 * 8 6 5 11 11 H 1.48501 * 109.47297 * 60.00248 * 10 8 6 12 12 H 1.48497 * 109.47125 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47491 * 300.00431 * 10 8 6 14 14 C 1.34772 * 119.99564 * 82.73761 * 5 4 3 15 15 O 1.21596 * 120.00307 * 3.79417 * 14 5 4 16 16 C 1.47731 * 119.99905 * 183.80351 * 14 5 4 17 17 C 1.39666 * 120.14889 * 327.85029 * 16 14 5 18 18 C 1.37914 * 119.84888 * 179.97438 * 17 16 14 19 19 C 1.38393 * 120.14733 * 359.74313 * 18 17 16 20 20 C 1.38358 * 120.30612 * 0.51575 * 19 18 17 21 21 C 1.50708 * 119.92419 * 179.76284 * 20 19 18 22 22 H 1.08992 * 110.98590 * 182.46607 * 21 20 19 23 23 C 1.55304 * 111.12175 * 306.71403 * 21 20 19 24 24 C 1.54388 * 102.25079 * 152.05139 * 23 21 20 25 25 O 1.43237 * 107.58774 * 338.64037 * 24 23 21 26 26 C 1.43649 * 109.97030 * 358.29055 * 25 24 23 27 27 C 1.37949 * 120.15384 * 359.48811 * 20 19 18 28 28 H 1.09002 * 109.47371 * 60.00094 * 1 2 3 29 29 H 1.09003 * 109.47209 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47395 * 300.00304 * 1 2 3 31 31 H 1.09008 * 109.47191 * 59.99721 * 3 2 1 32 32 H 1.09004 * 109.47042 * 300.00143 * 3 2 1 33 33 H 1.09006 * 109.46614 * 304.99750 * 4 3 2 34 34 H 1.08992 * 109.47388 * 185.00131 * 4 3 2 35 35 H 0.96994 * 120.00048 * 179.97438 * 9 8 6 36 36 H 1.08011 * 120.07528 * 0.02562 * 17 16 14 37 37 H 1.07992 * 119.92604 * 180.02562 * 18 17 16 38 38 H 1.08004 * 119.84937 * 180.25441 * 19 18 17 39 39 H 1.08996 * 110.85394 * 33.86617 * 23 21 20 40 40 H 1.08998 * 110.84696 * 270.23724 * 23 21 20 41 41 H 1.08998 * 109.83047 * 219.12450 * 24 23 21 42 42 H 1.09004 * 109.82636 * 98.15323 * 24 23 21 43 43 H 1.08996 * 110.30853 * 143.34802 * 26 25 24 44 44 H 1.09001 * 110.30636 * 265.41070 * 26 25 24 45 45 H 1.07998 * 120.08266 * 180.23612 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.2400 -0.7779 -1.2956 7 1 3.9250 -1.3635 -2.1467 8 6 4.9141 -1.3877 -0.2433 9 7 5.5913 -0.6580 0.6137 10 14 4.8567 -3.2446 -0.0484 11 1 5.4263 -3.8874 -1.2599 12 1 5.6496 -3.6421 1.1426 13 1 3.4480 -3.6807 0.1272 14 6 4.1204 1.3154 -2.3623 15 8 3.9527 2.5186 -2.3083 16 6 4.4827 0.6770 -3.6444 17 6 5.2956 -0.4586 -3.6574 18 6 5.6295 -1.0500 -4.8578 19 6 5.1566 -0.5236 -6.0472 20 6 4.3553 0.6042 -6.0419 21 6 3.8495 1.1732 -7.3425 22 1 3.2711 2.0813 -7.1726 23 6 5.0177 1.4296 -8.3331 24 6 4.3228 1.2838 -9.7040 25 8 3.1301 0.5159 -9.5052 26 6 3.0233 0.1235 -8.1275 27 6 4.0136 1.2059 -4.8485 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5682 0.8410 34 1 3.9785 2.1764 0.0889 35 1 6.0612 -1.0834 1.3479 36 1 5.6612 -0.8733 -2.7295 37 1 6.2576 -1.9283 -4.8693 38 1 5.4178 -0.9930 -6.9842 39 1 5.7999 0.6800 -8.2131 40 1 5.4197 2.4349 -8.2071 41 1 4.9834 0.7672 -10.4004 42 1 4.0677 2.2684 -10.0959 43 1 1.9816 0.1456 -7.8075 44 1 3.4412 -0.8730 -7.9845 45 1 3.3849 2.0840 -4.8454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457204271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:38 Heat of formation + Delta-G solvation = -90.615036 kcal Electronic energy + Delta-G solvation = -27382.637487 eV Core-core repulsion = 23558.643831 eV Total energy + Delta-G solvation = -3823.993656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.99610 -39.05809 -37.66708 -36.81652 -34.83503 -33.24441 -31.68478 -30.65108 -30.27953 -29.14961 -27.98987 -25.85559 -25.03425 -23.46362 -22.88834 -22.17154 -21.43230 -20.52281 -19.02103 -17.58064 -16.78469 -16.26889 -15.95488 -15.60136 -15.37860 -15.21197 -14.96829 -14.59734 -14.47956 -14.26595 -13.86802 -13.60615 -13.52772 -13.37693 -12.78956 -12.75682 -12.40465 -12.12464 -11.90340 -11.64495 -11.55566 -11.27488 -11.22733 -11.16221 -11.06119 -10.99815 -10.79562 -10.58946 -10.42664 -10.37772 -10.10070 -9.60999 -9.16850 -9.00313 -8.56780 -8.33841 -8.08218 -7.51759 -6.41860 -4.08499 1.63206 1.90551 3.13240 3.21095 3.25955 3.72197 3.84728 4.08575 4.36473 4.44885 4.59446 4.64882 4.78757 4.95432 5.04078 5.09026 5.18023 5.22889 5.45254 5.51650 5.61241 5.62905 5.69243 5.70169 5.76110 5.84229 5.87836 5.95404 5.99246 6.02076 6.07169 6.15274 6.24929 6.28436 6.48784 6.56557 6.67467 6.89215 6.96932 7.08539 7.16393 7.25654 7.38819 7.55640 7.76718 7.94128 8.31703 9.01686 9.42552 9.85062 10.61331 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014197 B = 0.003916 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.841478 B = 7147.721092 C = 7921.716453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.050 3.950 4 C 0.120 3.880 5 N -0.418 5.418 6 C -0.327 4.327 7 H 0.092 0.908 8 C 0.048 3.952 9 N -0.860 5.860 10 Si 0.912 3.088 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.270 1.270 14 C 0.506 3.494 15 O -0.606 6.606 16 C -0.090 4.090 17 C -0.070 4.070 18 C -0.140 4.140 19 C -0.111 4.111 20 C -0.102 4.102 21 C -0.075 4.075 22 H 0.092 0.908 23 C -0.149 4.149 24 C 0.051 3.949 25 O -0.388 6.388 26 C 0.058 3.942 27 C -0.074 4.074 28 H 0.032 0.968 29 H 0.078 0.922 30 H 0.030 0.970 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.109 0.891 34 H 0.072 0.928 35 H 0.271 0.729 36 H 0.167 0.833 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.770 -0.247 -10.064 10.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.027 4.027 4 C -0.003 4.003 5 N -0.134 5.134 6 C -0.455 4.455 7 H 0.110 0.890 8 C -0.159 4.159 9 N -0.496 5.496 10 Si 0.738 3.262 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.195 1.195 14 C 0.296 3.704 15 O -0.494 6.494 16 C -0.093 4.093 17 C -0.088 4.088 18 C -0.158 4.158 19 C -0.129 4.129 20 C -0.103 4.103 21 C -0.094 4.094 22 H 0.110 0.890 23 C -0.187 4.187 24 C -0.026 4.026 25 O -0.308 6.308 26 C -0.018 4.018 27 C -0.093 4.093 28 H 0.050 0.950 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.127 0.873 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.184 0.816 37 H 0.137 0.863 38 H 0.130 0.870 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.767 0.084 -9.950 10.328 hybrid contribution -0.131 -0.680 0.445 0.823 sum -2.898 -0.596 -9.505 9.955 Atomic orbital electron populations 1.22645 0.83296 1.01777 0.98880 1.88118 1.17505 1.27743 1.95062 1.23060 0.96481 0.84363 0.98834 1.21398 0.89078 0.99154 0.90714 1.43139 1.55450 1.07880 1.06887 1.19358 1.35515 0.82941 1.07643 0.89036 1.25343 0.94129 0.99858 0.96544 1.69870 1.27736 1.36567 1.15465 0.86235 0.78799 0.83073 0.78069 1.19621 1.20960 1.19500 1.18337 0.81133 0.85957 0.85011 1.90608 1.57676 1.14464 1.86626 1.20020 0.99294 0.96404 0.93592 1.22493 0.93812 0.92800 0.99694 1.21135 1.01421 1.00860 0.92425 1.20937 0.98210 0.95951 0.97810 1.19194 1.00831 0.97177 0.93053 1.21717 0.96121 0.98917 0.92635 0.88987 1.23254 0.98336 1.03611 0.93466 1.23125 0.86577 0.95788 0.97087 1.88379 1.42843 1.72505 1.27057 1.23528 1.00808 0.97322 0.80142 1.21022 0.98678 0.98815 0.90782 0.94971 0.90390 0.95102 0.94105 0.93995 0.87276 0.91006 0.91825 0.81635 0.86331 0.86963 0.90040 0.89820 0.91606 0.91426 0.89577 0.91652 0.86129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.61 16 2 O -0.37 -7.68 10.52 -35.23 -0.37 -8.05 16 3 C 0.05 1.03 6.22 37.16 0.23 1.26 16 4 C 0.12 2.82 5.24 -4.04 -0.02 2.80 16 5 N -0.42 -10.33 2.46 -115.92 -0.28 -10.62 16 6 C -0.33 -7.98 5.97 -15.00 -0.09 -8.07 16 7 H 0.09 2.21 6.23 -52.48 -0.33 1.88 16 8 C 0.05 1.16 4.91 -17.45 -0.09 1.07 16 9 N -0.86 -21.89 11.59 55.50 0.64 -21.24 16 10 Si 0.91 19.12 29.59 -169.99 -5.03 14.09 16 11 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 12 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 13 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 14 C 0.51 12.50 7.33 -12.38 -0.09 12.41 16 15 O -0.61 -16.08 16.44 5.28 0.09 -16.00 16 16 C -0.09 -1.94 5.53 -104.97 -0.58 -2.52 16 17 C -0.07 -1.39 7.75 -39.17 -0.30 -1.69 16 18 C -0.14 -2.30 10.03 -39.64 -0.40 -2.70 16 19 C -0.11 -1.63 8.27 -39.48 -0.33 -1.96 16 20 C -0.10 -1.57 5.01 -104.68 -0.52 -2.10 16 21 C -0.08 -0.95 3.31 -89.52 -0.30 -1.24 16 22 H 0.09 1.14 7.96 -51.93 -0.41 0.73 16 23 C -0.15 -1.59 6.43 -24.78 -0.16 -1.75 16 24 C 0.05 0.52 7.79 37.89 0.30 0.81 16 25 O -0.39 -5.00 11.36 -35.23 -0.40 -5.40 16 26 C 0.06 0.71 7.21 38.18 0.28 0.99 16 27 C -0.07 -1.37 9.24 -39.17 -0.36 -1.73 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.73 8.14 -51.92 -0.42 0.30 16 32 H 0.04 0.89 8.13 -51.93 -0.42 0.47 16 33 H 0.11 2.71 5.77 -51.93 -0.30 2.41 16 34 H 0.07 1.70 7.60 -51.93 -0.39 1.31 16 35 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 36 H 0.17 3.61 5.38 -52.48 -0.28 3.33 16 37 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.11 1.37 6.99 -52.48 -0.37 1.00 16 39 H 0.08 0.85 6.75 -51.93 -0.35 0.50 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.07 0.78 7.05 -51.93 -0.37 0.42 16 45 H 0.12 2.23 7.88 -52.49 -0.41 1.81 16 LS Contribution 365.77 15.07 5.51 5.51 Total: -1.00 -29.09 365.77 -7.74 -36.84 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -6.58 Total: 7.69 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -1.32 Total: -2.82 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: 0.36 Total: -31.86 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.68 Total: -29.45 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.09 -7.74 -36.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.778 kcal (2) G-P(sol) polarization free energy of solvation -29.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds