Wall clock time and date at job start Tue Mar 31 2020 12:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00220 * 2 1 4 4 C 1.53001 * 109.47500 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47099 * 64.99513 * 4 3 2 6 6 C 1.36865 * 120.00223 * 262.73480 * 5 4 3 7 7 H 1.08004 * 120.00410 * 138.92960 * 6 5 4 8 8 C 1.39053 * 120.00007 * 318.92473 * 6 5 4 9 9 N 1.31359 * 120.00389 * 342.59821 * 8 6 5 10 10 Si 1.86800 * 119.99882 * 162.59404 * 8 6 5 11 11 H 1.48501 * 109.47297 * 60.00248 * 10 8 6 12 12 H 1.48497 * 109.47125 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47491 * 300.00431 * 10 8 6 14 14 C 1.34772 * 119.99564 * 82.73761 * 5 4 3 15 15 O 1.21596 * 120.00307 * 3.79417 * 14 5 4 16 16 C 1.47731 * 119.99905 * 183.80351 * 14 5 4 17 17 C 1.39666 * 120.14889 * 327.85029 * 16 14 5 18 18 C 1.37914 * 119.84888 * 179.97438 * 17 16 14 19 19 C 1.38393 * 120.14733 * 359.74313 * 18 17 16 20 20 C 1.38358 * 120.30612 * 0.51575 * 19 18 17 21 21 C 1.50708 * 119.92419 * 179.76284 * 20 19 18 22 22 H 1.08992 * 110.98590 * 182.46607 * 21 20 19 23 23 C 1.55304 * 111.12175 * 306.71403 * 21 20 19 24 24 C 1.54388 * 102.25079 * 152.05139 * 23 21 20 25 25 O 1.43237 * 107.58774 * 338.64037 * 24 23 21 26 26 C 1.43649 * 109.97030 * 358.29055 * 25 24 23 27 27 C 1.37949 * 120.15384 * 359.48811 * 20 19 18 28 28 H 1.09002 * 109.47371 * 60.00094 * 1 2 3 29 29 H 1.09003 * 109.47209 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47395 * 300.00304 * 1 2 3 31 31 H 1.09008 * 109.47191 * 59.99721 * 3 2 1 32 32 H 1.09004 * 109.47042 * 300.00143 * 3 2 1 33 33 H 1.09006 * 109.46614 * 304.99750 * 4 3 2 34 34 H 1.08992 * 109.47388 * 185.00131 * 4 3 2 35 35 H 0.96994 * 120.00048 * 179.97438 * 9 8 6 36 36 H 1.08011 * 120.07528 * 0.02562 * 17 16 14 37 37 H 1.07992 * 119.92604 * 180.02562 * 18 17 16 38 38 H 1.08004 * 119.84937 * 180.25441 * 19 18 17 39 39 H 1.08996 * 110.85394 * 33.86617 * 23 21 20 40 40 H 1.08998 * 110.84696 * 270.23724 * 23 21 20 41 41 H 1.08998 * 109.83047 * 219.12450 * 24 23 21 42 42 H 1.09004 * 109.82636 * 98.15323 * 24 23 21 43 43 H 1.08996 * 110.30853 * 143.34802 * 26 25 24 44 44 H 1.09001 * 110.30636 * 265.41070 * 26 25 24 45 45 H 1.07998 * 120.08266 * 180.23612 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.2400 -0.7779 -1.2956 7 1 3.9250 -1.3635 -2.1467 8 6 4.9141 -1.3877 -0.2433 9 7 5.5913 -0.6580 0.6137 10 14 4.8567 -3.2446 -0.0484 11 1 5.4263 -3.8874 -1.2599 12 1 5.6496 -3.6421 1.1426 13 1 3.4480 -3.6807 0.1272 14 6 4.1204 1.3154 -2.3623 15 8 3.9527 2.5186 -2.3083 16 6 4.4827 0.6770 -3.6444 17 6 5.2956 -0.4586 -3.6574 18 6 5.6295 -1.0500 -4.8578 19 6 5.1566 -0.5236 -6.0472 20 6 4.3553 0.6042 -6.0419 21 6 3.8495 1.1732 -7.3425 22 1 3.2711 2.0813 -7.1726 23 6 5.0177 1.4296 -8.3331 24 6 4.3228 1.2838 -9.7040 25 8 3.1301 0.5159 -9.5052 26 6 3.0233 0.1235 -8.1275 27 6 4.0136 1.2059 -4.8485 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5682 0.8410 34 1 3.9785 2.1764 0.0889 35 1 6.0612 -1.0834 1.3479 36 1 5.6612 -0.8733 -2.7295 37 1 6.2576 -1.9283 -4.8693 38 1 5.4178 -0.9930 -6.9842 39 1 5.7999 0.6800 -8.2131 40 1 5.4197 2.4349 -8.2071 41 1 4.9834 0.7672 -10.4004 42 1 4.0677 2.2684 -10.0959 43 1 1.9816 0.1456 -7.8075 44 1 3.4412 -0.8730 -7.9845 45 1 3.3849 2.0840 -4.8454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457204271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:37 Heat of formation + Delta-G solvation = -107.752663 kcal Electronic energy + Delta-G solvation = -27383.380630 eV Core-core repulsion = 23558.643831 eV Total energy + Delta-G solvation = -3824.736799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.30688 -40.48480 -39.07665 -38.39755 -36.71946 -34.40828 -33.56643 -32.13095 -31.40617 -30.55525 -29.18302 -27.31886 -26.82318 -24.97508 -24.13350 -23.15544 -22.89528 -21.89723 -20.73952 -19.18270 -18.00613 -17.66552 -17.23642 -17.18678 -16.95321 -16.60873 -16.25011 -16.14965 -16.00762 -15.64238 -15.34423 -14.99600 -14.92513 -14.46193 -14.39300 -13.99011 -13.73582 -13.63017 -13.34742 -13.13481 -12.98189 -12.81390 -12.59936 -12.55071 -12.41813 -12.38601 -12.15691 -12.09360 -11.84256 -11.77514 -11.59958 -10.98854 -10.58511 -10.47809 -10.40328 -9.77604 -9.49463 -9.39084 -8.28115 -5.99879 0.18135 0.52896 1.45598 1.52016 1.58715 2.07822 2.33626 2.81790 2.88408 2.97288 2.98295 3.25181 3.63258 3.74115 3.99597 4.09879 4.11516 4.19810 4.22079 4.27763 4.31284 4.38637 4.43601 4.48717 4.55181 4.57157 4.63023 4.73129 4.74365 4.79703 4.82945 4.88453 4.92838 5.05421 5.10675 5.17587 5.22368 5.27615 5.48609 5.63928 5.67429 5.77306 5.98162 6.02802 6.14475 6.35665 6.42535 7.12585 7.53701 7.96696 8.76252 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014197 B = 0.003916 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.841478 B = 7147.721092 C = 7921.716453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.063 3.937 4 C 0.118 3.882 5 N -0.426 5.426 6 C -0.329 4.329 7 H 0.092 0.908 8 C 0.011 3.989 9 N -0.893 5.893 10 Si 0.972 3.028 11 H -0.255 1.255 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.490 3.510 15 O -0.639 6.639 16 C -0.123 4.123 17 C -0.087 4.087 18 C -0.132 4.132 19 C -0.094 4.094 20 C -0.087 4.087 21 C -0.078 4.078 22 H 0.089 0.911 23 C -0.144 4.144 24 C 0.048 3.952 25 O -0.405 6.405 26 C 0.061 3.939 27 C -0.085 4.085 28 H 0.037 0.963 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.272 0.728 36 H 0.141 0.859 37 H 0.148 0.852 38 H 0.153 0.847 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.841 -2.015 -12.494 12.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.014 4.014 4 C -0.006 4.006 5 N -0.142 5.142 6 C -0.457 4.457 7 H 0.110 0.890 8 C -0.192 4.192 9 N -0.530 5.530 10 Si 0.796 3.204 11 H -0.179 1.179 12 H -0.209 1.209 13 H -0.200 1.200 14 C 0.282 3.718 15 O -0.530 6.530 16 C -0.125 4.125 17 C -0.105 4.105 18 C -0.150 4.150 19 C -0.112 4.112 20 C -0.087 4.087 21 C -0.096 4.096 22 H 0.107 0.893 23 C -0.181 4.181 24 C -0.028 4.028 25 O -0.325 6.325 26 C -0.015 4.015 27 C -0.104 4.104 28 H 0.056 0.944 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.159 0.841 37 H 0.166 0.834 38 H 0.170 0.830 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.091 0.909 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.845 -1.693 -12.390 12.825 hybrid contribution -0.130 -0.083 1.109 1.120 sum -2.975 -1.775 -11.281 11.801 Atomic orbital electron populations 1.22892 0.80518 1.03412 1.00273 1.88048 1.20584 1.27691 1.95322 1.22823 0.94363 0.84701 0.99554 1.21347 0.91368 0.97798 0.90045 1.43356 1.55369 1.08239 1.07208 1.19473 1.35515 0.82784 1.07889 0.89037 1.26048 0.93508 1.03633 0.95999 1.69972 1.28756 1.38200 1.16116 0.85303 0.78335 0.78293 0.78461 1.17903 1.20924 1.19962 1.19005 0.80661 0.85830 0.86349 1.90548 1.59270 1.15763 1.87386 1.19917 1.01793 0.98012 0.92817 1.22243 0.94804 0.93071 1.00392 1.21412 1.00964 1.01152 0.91461 1.21337 0.96175 0.94897 0.98771 1.19436 0.99570 0.96712 0.92965 1.21735 0.97287 0.99001 0.91597 0.89256 1.23259 0.97603 1.04414 0.92855 1.23283 0.86015 0.96378 0.97086 1.88368 1.44118 1.72991 1.27043 1.23508 1.00824 0.97274 0.79938 1.21045 0.99158 0.99002 0.91207 0.94400 0.88695 0.92796 0.91185 0.95232 0.88827 0.92537 0.91808 0.84111 0.83389 0.82974 0.89191 0.89081 0.89824 0.90427 0.89591 0.90900 0.87051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.01 16 2 O -0.40 -16.76 10.52 -148.98 -1.57 -18.32 16 3 C 0.06 2.66 6.22 71.98 0.45 3.11 16 4 C 0.12 5.83 5.24 86.38 0.45 6.28 16 5 N -0.43 -22.13 2.46 -638.93 -1.57 -23.70 16 6 C -0.33 -16.57 5.97 84.10 0.50 -16.07 16 7 H 0.09 4.53 6.23 -2.91 -0.02 4.51 16 8 C 0.01 0.56 4.91 84.96 0.42 0.97 16 9 N -0.89 -46.95 11.59 21.68 0.25 -46.70 16 10 Si 0.97 39.29 29.59 68.60 2.03 41.32 16 11 H -0.25 -9.55 7.11 99.48 0.71 -8.85 16 12 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 13 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 14 C 0.49 25.55 7.33 86.75 0.64 26.18 16 15 O -0.64 -35.96 16.44 -4.02 -0.07 -36.03 16 16 C -0.12 -5.43 5.53 -20.09 -0.11 -5.54 16 17 C -0.09 -3.47 7.75 22.54 0.17 -3.30 16 18 C -0.13 -4.01 10.03 22.23 0.22 -3.79 16 19 C -0.09 -2.43 8.27 22.34 0.18 -2.25 16 20 C -0.09 -2.49 5.01 -19.90 -0.10 -2.59 16 21 C -0.08 -1.76 3.31 -10.08 -0.03 -1.79 16 22 H 0.09 2.09 7.96 -2.39 -0.02 2.07 16 23 C -0.14 -2.56 6.43 31.86 0.20 -2.35 16 24 C 0.05 0.82 7.79 72.45 0.56 1.38 16 25 O -0.41 -9.22 11.36 -148.98 -1.69 -10.91 16 26 C 0.06 1.31 7.21 72.65 0.52 1.83 16 27 C -0.08 -3.19 9.24 22.54 0.21 -2.98 16 28 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 2.52 8.14 -2.39 -0.02 2.51 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 32 H 0.03 1.30 8.13 -2.38 -0.02 1.28 16 33 H 0.09 4.89 5.77 -2.38 -0.01 4.88 16 34 H 0.06 2.87 7.60 -2.39 -0.02 2.85 16 35 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 36 H 0.14 6.33 5.38 -2.91 -0.02 6.31 16 37 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 38 H 0.15 2.83 6.99 -2.91 -0.02 2.81 16 39 H 0.09 1.46 6.75 -2.39 -0.02 1.44 16 40 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.07 1.46 7.05 -2.39 -0.02 1.44 16 45 H 0.11 4.29 7.88 -2.91 -0.02 4.26 16 Total: -1.00 -65.95 365.77 3.92 -62.03 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 0.99 Total: 31.20 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 5.54 Total: 1.12 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -1.32 Total: -70.40 kcal Atomic # 8 Polarization: -61.94 SS G_CDS: -3.33 Total: -65.26 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -65.95 3.92 -62.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.722 kcal (2) G-P(sol) polarization free energy of solvation -65.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds