Wall clock time and date at job start Tue Mar 31 2020 12:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00248 * 2 1 4 4 C 1.52995 * 109.47512 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47216 * 64.99702 * 4 3 2 6 6 C 1.36875 * 119.99828 * 264.42923 * 5 4 3 7 7 H 1.08008 * 119.99602 * 130.34995 * 6 5 4 8 8 C 1.39044 * 120.00553 * 310.34798 * 6 5 4 9 9 N 1.31363 * 119.99920 * 350.95887 * 8 6 5 10 10 Si 1.86800 * 120.00334 * 170.95427 * 8 6 5 11 11 H 1.48493 * 109.46955 * 90.00025 * 10 8 6 12 12 H 1.48498 * 109.47152 * 210.00672 * 10 8 6 13 13 H 1.48506 * 109.46936 * 330.00441 * 10 8 6 14 14 C 1.34771 * 120.00394 * 84.43579 * 5 4 3 15 15 O 1.21595 * 119.99654 * 2.46849 * 14 5 4 16 16 C 1.47726 * 120.00357 * 182.47641 * 14 5 4 17 17 C 1.39657 * 120.14815 * 317.83280 * 16 14 5 18 18 C 1.37923 * 119.84834 * 179.97438 * 17 16 14 19 19 C 1.38401 * 120.14531 * 359.97438 * 18 17 16 20 20 C 1.38350 * 120.30931 * 359.73017 * 19 18 17 21 21 C 1.50702 * 119.92744 * 180.27742 * 20 19 18 22 22 H 1.09000 * 110.80347 * 183.89349 * 21 20 19 23 23 C 1.54810 * 110.90483 * 60.27184 * 21 20 19 24 24 C 1.54105 * 104.18841 * 220.92161 * 23 21 20 25 25 O 1.43747 * 107.28938 * 357.97165 * 24 23 21 26 26 C 1.44383 * 106.97716 * 26.51384 * 25 24 23 27 27 C 1.37964 * 120.14877 * 0.54641 * 20 19 18 28 28 H 1.08998 * 109.47369 * 299.99887 * 1 2 3 29 29 H 1.08999 * 109.47333 * 60.00417 * 1 2 3 30 30 H 1.09006 * 109.47338 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47313 * 59.99544 * 3 2 1 32 32 H 1.09000 * 109.46642 * 300.00137 * 3 2 1 33 33 H 1.09004 * 109.46664 * 304.99800 * 4 3 2 34 34 H 1.09002 * 109.47594 * 184.99733 * 4 3 2 35 35 H 0.96999 * 120.00119 * 179.97438 * 9 8 6 36 36 H 1.08000 * 120.08068 * 0.02562 * 17 16 14 37 37 H 1.07991 * 119.92589 * 180.02562 * 18 17 16 38 38 H 1.08007 * 119.84366 * 180.02562 * 19 18 17 39 39 H 1.09001 * 110.49153 * 339.59577 * 23 21 20 40 40 H 1.09001 * 110.48848 * 102.24728 * 23 21 20 41 41 H 1.08993 * 109.87707 * 117.39005 * 24 23 21 42 42 H 1.08997 * 109.87707 * 238.40067 * 24 23 21 43 43 H 1.09000 * 110.61569 * 201.43827 * 26 25 24 44 44 H 1.08998 * 110.61531 * 78.43784 * 26 25 24 45 45 H 1.07998 * 120.07303 * 179.72326 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.2065 -0.7838 -1.3043 7 1 3.7690 -1.3767 -2.0940 8 6 5.0043 -1.3900 -0.3403 9 7 5.6789 -0.6528 0.5124 10 14 5.1167 -3.2528 -0.2576 11 1 6.2330 -3.7200 -1.1182 12 1 5.3642 -3.6719 1.1454 13 1 3.8420 -3.8473 -0.7342 14 6 4.1534 1.3211 -2.3536 15 8 3.9919 2.5249 -2.2964 16 6 4.5443 0.6881 -3.6299 17 6 5.5121 -0.3186 -3.6460 18 6 5.8720 -0.9057 -4.8410 19 6 5.2760 -0.4996 -6.0223 20 6 4.3121 0.4928 -6.0128 21 6 3.6642 0.9240 -7.3032 22 1 2.9813 1.7567 -7.1343 23 6 2.9327 -0.2622 -7.9774 24 6 3.2562 -0.1032 -9.4757 25 8 4.0477 1.0883 -9.6177 26 6 4.7336 1.2908 -8.3635 27 6 3.9468 1.0926 -4.8252 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8513 0.5682 0.8410 34 1 3.9785 2.1765 0.0889 35 1 6.2351 -1.0758 1.1852 36 1 5.9771 -0.6373 -2.7248 37 1 6.6199 -1.6846 -4.8549 38 1 5.5612 -0.9630 -6.9552 39 1 3.3176 -1.2106 -7.6025 40 1 1.8579 -0.1926 -7.8097 41 1 3.8207 -0.9671 -9.8266 42 1 2.3324 -0.0074 -10.0462 43 1 5.0387 2.3318 -8.2566 44 1 5.5948 0.6273 -8.2855 45 1 3.1974 1.8703 -4.8198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457204272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:41 Heat of formation + Delta-G solvation = -114.258010 kcal Electronic energy + Delta-G solvation = -27411.390181 eV Core-core repulsion = 23586.371289 eV Total energy + Delta-G solvation = -3825.018892 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.28172 -40.46790 -39.06484 -38.40482 -36.65306 -34.37201 -33.56403 -32.14582 -31.31365 -30.54708 -29.13142 -27.29888 -26.74539 -25.03555 -24.14270 -23.14265 -23.01849 -21.80237 -20.74921 -19.05248 -17.96582 -17.57649 -17.30414 -17.15734 -16.95536 -16.59439 -16.29061 -16.16006 -16.06533 -15.77306 -15.45133 -15.00830 -14.87724 -14.39413 -14.34296 -13.88567 -13.74177 -13.61093 -13.35409 -13.06891 -12.97194 -12.81153 -12.65380 -12.55991 -12.47401 -12.33575 -12.18020 -12.07500 -11.85451 -11.81701 -11.52502 -10.99984 -10.63213 -10.58887 -10.42343 -9.76203 -9.48875 -9.33995 -8.25369 -6.09287 0.22012 0.52587 1.44053 1.48575 1.59016 2.05089 2.33796 2.78279 2.93896 2.99366 3.04060 3.21362 3.69970 3.75560 4.00678 4.09797 4.10350 4.18947 4.21354 4.26581 4.34290 4.40855 4.43006 4.48864 4.55242 4.57499 4.61246 4.72272 4.74005 4.80806 4.84121 4.89559 4.91661 5.08325 5.10063 5.15322 5.20764 5.27140 5.50149 5.62637 5.64615 5.75302 5.91972 6.05966 6.12673 6.36838 6.43561 7.14165 7.52074 7.97586 8.79690 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013470 B = 0.004046 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.268208 B = 6918.967712 C = 7732.032714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.064 3.936 4 C 0.121 3.879 5 N -0.429 5.429 6 C -0.320 4.320 7 H 0.078 0.922 8 C 0.012 3.988 9 N -0.899 5.899 10 Si 0.973 3.027 11 H -0.263 1.263 12 H -0.284 1.284 13 H -0.267 1.267 14 C 0.499 3.501 15 O -0.636 6.636 16 C -0.115 4.115 17 C -0.074 4.074 18 C -0.129 4.129 19 C -0.095 4.095 20 C -0.084 4.084 21 C -0.077 4.077 22 H 0.086 0.914 23 C -0.145 4.145 24 C 0.045 3.955 25 O -0.399 6.399 26 C 0.056 3.944 27 C -0.088 4.088 28 H 0.053 0.947 29 H 0.037 0.963 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.271 0.729 36 H 0.121 0.879 37 H 0.148 0.852 38 H 0.154 0.846 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.591 -3.825 -12.469 13.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.014 4.014 4 C -0.003 4.003 5 N -0.145 5.145 6 C -0.448 4.448 7 H 0.096 0.904 8 C -0.190 4.190 9 N -0.536 5.536 10 Si 0.796 3.204 11 H -0.188 1.188 12 H -0.209 1.209 13 H -0.191 1.191 14 C 0.290 3.710 15 O -0.526 6.526 16 C -0.118 4.118 17 C -0.092 4.092 18 C -0.147 4.147 19 C -0.113 4.113 20 C -0.084 4.084 21 C -0.096 4.096 22 H 0.104 0.896 23 C -0.183 4.183 24 C -0.031 4.031 25 O -0.319 6.319 26 C -0.021 4.021 27 C -0.108 4.108 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.139 0.861 37 H 0.166 0.834 38 H 0.172 0.828 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.437 -3.326 -12.402 13.585 hybrid contribution -0.198 -0.316 1.157 1.216 sum -4.635 -3.642 -11.244 12.695 Atomic orbital electron populations 1.22892 0.80531 1.03421 1.00248 1.88054 1.20568 1.27690 1.95316 1.22822 0.94355 0.84695 0.99532 1.21309 0.91372 0.97641 0.89941 1.43300 1.56113 1.07670 1.07430 1.19212 1.29037 0.82111 1.14464 0.90421 1.26159 0.93606 1.03495 0.95772 1.69942 1.27325 1.37530 1.18852 0.85238 0.79093 0.78364 0.77657 1.18783 1.20922 1.19145 1.19148 0.79706 0.85792 0.86355 1.90560 1.59056 1.15856 1.87089 1.19866 1.00075 0.98970 0.92904 1.21622 0.95305 0.93000 0.99314 1.21362 1.01065 1.00823 0.91470 1.21307 0.95184 0.96097 0.98703 1.19506 0.98209 0.97523 0.93195 1.21621 0.97372 0.98998 0.91568 0.89559 1.23068 1.01902 0.98474 0.94859 1.23316 0.96083 0.87911 0.95801 1.88841 1.62664 1.45607 1.34748 1.23731 0.94400 1.02745 0.81175 1.21021 0.99382 0.99061 0.91288 0.92822 0.94418 0.88669 0.91198 0.95229 0.89461 0.92519 0.91945 0.86085 0.83381 0.82841 0.89542 0.89786 0.90880 0.88704 0.88649 0.90485 0.87101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.40 -16.68 10.44 -148.98 -1.56 -18.24 16 3 C 0.06 2.66 6.24 71.98 0.45 3.11 16 4 C 0.12 5.98 5.25 86.38 0.45 6.43 16 5 N -0.43 -22.34 2.39 -638.95 -1.53 -23.87 16 6 C -0.32 -16.30 5.89 84.10 0.50 -15.81 16 7 H 0.08 3.98 7.27 -2.91 -0.02 3.96 16 8 C 0.01 0.62 4.87 84.96 0.41 1.04 16 9 N -0.90 -47.71 11.72 21.68 0.25 -47.45 16 10 Si 0.97 39.67 29.56 68.60 2.03 41.69 16 11 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 12 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 13 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 14 C 0.50 26.04 7.24 86.75 0.63 26.67 16 15 O -0.64 -35.83 16.61 -4.01 -0.07 -35.89 16 16 C -0.12 -5.12 5.29 -20.09 -0.11 -5.22 16 17 C -0.07 -2.97 8.10 22.54 0.18 -2.79 16 18 C -0.13 -3.93 10.03 22.23 0.22 -3.71 16 19 C -0.10 -2.44 8.20 22.34 0.18 -2.26 16 20 C -0.08 -2.41 4.94 -19.90 -0.10 -2.51 16 21 C -0.08 -1.75 3.34 -10.24 -0.03 -1.78 16 22 H 0.09 2.05 7.95 -2.39 -0.02 2.03 16 23 C -0.15 -2.65 6.50 31.59 0.21 -2.44 16 24 C 0.05 0.75 7.70 72.36 0.56 1.31 16 25 O -0.40 -8.90 11.52 -148.98 -1.72 -10.61 16 26 C 0.06 1.16 7.10 72.66 0.52 1.67 16 27 C -0.09 -3.31 9.30 22.54 0.21 -3.10 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 31 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 4.58 6.13 -2.38 -0.01 4.56 16 34 H 0.06 2.88 7.56 -2.39 -0.02 2.86 16 35 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 36 H 0.12 5.52 6.24 -2.91 -0.02 5.51 16 37 H 0.15 3.61 8.06 -2.92 -0.02 3.58 16 38 H 0.15 2.79 7.22 -2.91 -0.02 2.77 16 39 H 0.09 1.50 7.22 -2.39 -0.02 1.49 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.10 1.94 8.14 -2.39 -0.02 1.93 16 44 H 0.08 1.42 6.67 -2.39 -0.02 1.41 16 45 H 0.11 4.23 7.98 -2.91 -0.02 4.20 16 Total: -1.00 -66.54 368.46 3.92 -62.62 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.98 Total: 29.13 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 5.53 Total: 2.62 kcal Atomic # 7 Polarization: -70.04 SS G_CDS: -1.28 Total: -71.32 kcal Atomic # 8 Polarization: -61.40 SS G_CDS: -3.34 Total: -64.74 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.69 kcal Total: -66.54 3.92 -62.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.641 kcal (2) G-P(sol) polarization free energy of solvation -66.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds