Wall clock time and date at job start Tue Mar 31 2020 12:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 114.00040 * 2 1 4 4 C 1.53000 * 109.46858 * 180.02562 * 3 2 1 5 5 N 1.46491 * 109.47437 * 64.99567 * 4 3 2 6 6 C 1.37106 * 119.99761 * 84.94654 * 5 4 3 7 7 H 1.08007 * 119.99640 * 218.03673 * 6 5 4 8 8 C 1.38949 * 120.00105 * 38.30821 * 6 5 4 9 9 N 1.31411 * 119.99974 * 20.91923 * 8 6 5 10 10 Si 1.86803 * 119.99741 * 200.91992 * 8 6 5 11 11 H 1.48504 * 109.46836 * 90.00217 * 10 8 6 12 12 H 1.48493 * 109.47062 * 209.99953 * 10 8 6 13 13 H 1.48495 * 109.47254 * 330.00222 * 10 8 6 14 14 C 1.34777 * 120.00616 * 264.94168 * 5 4 3 15 15 O 1.21298 * 119.99309 * 359.97438 * 14 5 4 16 16 C 1.50693 * 120.00371 * 179.97438 * 14 5 4 17 17 C 1.53000 * 109.47031 * 180.02562 * 16 14 5 18 18 H 1.09000 * 109.33740 * 304.99852 * 17 16 14 19 19 O 1.42723 * 109.33895 * 64.67419 * 17 16 14 20 20 C 1.43165 * 113.17252 * 172.11566 * 19 17 16 21 21 C 1.52976 * 108.32379 * 289.06365 * 20 19 17 22 22 C 1.50745 * 109.75461 * 49.26930 * 21 20 19 23 23 C 1.38596 * 118.75833 * 163.13273 * 22 21 20 24 24 C 1.38065 * 120.27685 * 179.75732 * 23 22 21 25 25 C 1.38263 * 119.86127 * 0.02562 * 24 23 22 26 26 C 1.38057 * 119.89784 * 0.08605 * 25 24 23 27 27 C 1.37903 * 121.35362 * 343.04309 * 22 21 20 28 28 H 1.09006 * 109.46843 * 60.00059 * 1 2 3 29 29 H 1.08995 * 109.47192 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47016 * 300.00621 * 1 2 3 31 31 H 1.09003 * 109.47077 * 59.99800 * 3 2 1 32 32 H 1.09003 * 109.47130 * 299.99441 * 3 2 1 33 33 H 1.09003 * 109.46758 * 304.99478 * 4 3 2 34 34 H 1.08999 * 109.47367 * 185.00377 * 4 3 2 35 35 H 0.96996 * 119.99671 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.47445 * 300.00100 * 16 14 5 37 37 H 1.09002 * 109.47147 * 60.00435 * 16 14 5 38 38 H 1.08996 * 109.67335 * 169.43042 * 20 19 17 39 39 H 1.09002 * 109.73458 * 48.72638 * 20 19 17 40 40 H 1.09002 * 109.42213 * 289.18619 * 21 20 19 41 41 H 1.08996 * 109.37505 * 169.33240 * 21 20 19 42 42 H 1.07998 * 119.85980 * 359.73081 * 23 22 21 43 43 H 1.08001 * 120.07441 * 180.02562 * 24 23 22 44 44 H 1.07996 * 120.05179 * 180.09404 * 25 24 23 45 45 H 1.07991 * 119.85141 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2526 6 6 4.1667 1.3357 -2.3698 7 1 3.8887 0.9563 -3.3420 8 6 4.7232 2.6034 -2.2518 9 7 5.4324 2.9135 -1.1898 10 14 4.4632 3.8670 -3.6029 11 1 3.2346 4.6510 -3.3176 12 1 5.6321 4.7810 -3.6574 13 1 4.3158 3.1734 -4.9076 14 6 4.1931 -0.7648 -1.3063 15 8 4.0246 -1.4472 -0.3178 16 6 4.6454 -1.4030 -2.5944 17 6 4.8165 -2.9089 -2.3849 18 1 5.4960 -3.0823 -1.5504 19 8 3.5477 -3.4922 -2.0903 20 6 3.5799 -4.9231 -2.0554 21 6 3.7609 -5.4351 -3.4856 22 6 4.9028 -4.7064 -4.1469 23 6 5.4621 -5.2452 -5.2949 24 6 6.5059 -4.6015 -5.9290 25 6 6.9958 -3.4145 -5.4163 26 6 6.4409 -2.8783 -4.2716 27 6 5.3928 -3.5239 -3.6336 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8901 33 1 3.8514 0.5681 0.8410 34 1 3.9787 2.1763 0.0890 35 1 5.8211 3.7983 -1.1077 36 1 3.8989 -1.2267 -3.3689 37 1 5.5967 -0.9680 -2.9009 38 1 2.6430 -5.3014 -1.6466 39 1 4.4139 -5.2575 -1.4384 40 1 2.8450 -5.2626 -4.0509 41 1 3.9770 -6.5031 -3.4626 42 1 5.0799 -6.1728 -5.6948 43 1 6.9390 -5.0241 -6.8236 44 1 7.8112 -2.9076 -5.9107 45 1 6.8244 -1.9514 -3.8716 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457209813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:14 Heat of formation + Delta-G solvation = -94.729447 kcal Electronic energy + Delta-G solvation = -27845.297603 eV Core-core repulsion = 24021.125533 eV Total energy + Delta-G solvation = -3824.172070 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.19771 -38.42383 -37.21834 -36.72458 -34.61771 -33.32072 -31.92649 -31.51406 -29.92560 -29.16410 -27.70408 -25.68301 -24.80276 -23.96393 -23.52406 -22.06193 -20.95220 -19.79630 -18.92742 -17.16080 -16.69615 -16.15414 -15.78034 -15.59703 -15.34886 -15.21270 -15.01659 -14.42687 -14.33874 -14.14622 -13.98174 -13.57908 -13.50659 -13.11008 -12.88135 -12.69669 -12.14196 -12.00223 -11.83860 -11.71694 -11.55416 -11.37618 -11.29401 -11.03368 -10.97079 -10.70424 -10.57929 -10.42521 -10.31089 -10.23823 -10.06885 -9.20219 -9.08553 -8.90194 -8.64018 -8.46815 -8.13102 -7.38012 -6.33291 -4.03145 1.45351 1.49000 3.12187 3.22322 3.24194 3.83895 4.06908 4.15247 4.29278 4.62218 4.70458 4.78920 4.92160 5.00148 5.12411 5.14715 5.19554 5.38085 5.52319 5.56175 5.68567 5.73589 5.79234 5.81128 5.84645 5.97034 6.02709 6.06071 6.10141 6.13626 6.21176 6.22604 6.35303 6.47790 6.51987 6.56204 6.64930 6.67537 6.78458 6.99856 7.11301 7.26654 7.49570 7.67147 7.97465 8.05835 8.46161 9.16026 9.66564 10.13859 10.67983 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011679 B = 0.004832 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.864143 B = 5793.826370 C = 7519.857102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.368 6.368 3 C 0.050 3.950 4 C 0.116 3.884 5 N -0.445 5.445 6 C -0.333 4.333 7 H 0.086 0.914 8 C 0.042 3.958 9 N -0.863 5.863 10 Si 0.909 3.091 11 H -0.278 1.278 12 H -0.284 1.284 13 H -0.269 1.269 14 C 0.487 3.513 15 O -0.580 6.580 16 C -0.109 4.109 17 C 0.147 3.853 18 H 0.075 0.925 19 O -0.347 6.347 20 C 0.059 3.941 21 C -0.115 4.115 22 C -0.075 4.075 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.107 4.107 27 C -0.104 4.104 28 H 0.031 0.969 29 H 0.075 0.925 30 H 0.029 0.971 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.115 0.885 35 H 0.268 0.732 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.403 -10.205 -5.752 11.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.286 6.286 3 C -0.027 4.027 4 C -0.008 4.008 5 N -0.165 5.165 6 C -0.461 4.461 7 H 0.104 0.896 8 C -0.163 4.163 9 N -0.500 5.500 10 Si 0.736 3.264 11 H -0.204 1.204 12 H -0.210 1.210 13 H -0.194 1.194 14 C 0.276 3.724 15 O -0.463 6.463 16 C -0.149 4.149 17 C 0.089 3.911 18 H 0.092 0.908 19 O -0.265 6.265 20 C -0.019 4.019 21 C -0.152 4.152 22 C -0.075 4.075 23 C -0.141 4.141 24 C -0.143 4.143 25 C -0.142 4.142 26 C -0.125 4.125 27 C -0.105 4.105 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.132 0.868 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.433 -10.415 -5.138 11.702 hybrid contribution -0.121 0.978 -0.997 1.402 sum -1.555 -9.437 -6.136 11.363 Atomic orbital electron populations 1.22606 0.83502 1.01578 0.98704 1.88153 1.17399 1.28025 1.95043 1.23090 0.96702 0.84302 0.98644 1.21433 0.89380 1.01775 0.88226 1.43212 1.58473 1.04887 1.09909 1.19405 1.40815 0.98311 0.87583 0.89629 1.25341 0.94135 0.99307 0.97556 1.69901 1.29155 1.21470 1.29452 0.86212 0.77946 0.80728 0.81508 1.20396 1.21013 1.19357 1.20101 0.79970 0.83241 0.89096 1.90546 1.55750 1.62731 1.37254 1.21495 1.03701 0.90851 0.98876 1.20677 0.85732 0.92777 0.91899 0.90761 1.88245 1.29665 1.17604 1.91012 1.22513 1.02195 0.82873 0.94275 1.21165 0.96995 0.99279 0.97777 1.19521 0.97172 0.94971 0.95856 1.20995 0.97294 1.00148 0.95702 1.21042 0.97318 0.95999 0.99904 1.21093 1.00269 0.96204 0.96599 1.21226 0.95817 0.99883 0.95530 1.20460 0.96826 0.95063 0.98110 0.95029 0.90612 0.95286 0.94610 0.93478 0.91741 0.86779 0.92136 0.89641 0.88166 0.88811 0.93076 0.89949 0.90301 0.86414 0.86391 0.86073 0.85183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 101.05 1.11 1.68 16 2 O -0.37 -8.26 10.15 -35.23 -0.36 -8.62 16 3 C 0.05 1.08 6.26 37.16 0.23 1.32 16 4 C 0.12 2.83 5.50 -4.05 -0.02 2.80 16 5 N -0.44 -11.34 2.48 -114.81 -0.28 -11.63 16 6 C -0.33 -8.38 8.56 -14.93 -0.13 -8.51 16 7 H 0.09 2.10 7.10 -52.48 -0.37 1.73 16 8 C 0.04 1.04 5.01 -17.47 -0.09 0.95 16 9 N -0.86 -22.31 11.42 55.50 0.63 -21.68 16 10 Si 0.91 19.22 29.60 -169.99 -5.03 14.18 16 11 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 13 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 14 C 0.49 12.25 7.25 -10.99 -0.08 12.17 16 15 O -0.58 -15.84 14.66 -9.63 -0.14 -15.98 16 16 C -0.11 -2.30 3.80 -27.89 -0.11 -2.40 16 17 C 0.15 2.80 2.28 -27.90 -0.06 2.74 16 18 H 0.07 1.49 7.95 -51.93 -0.41 1.07 16 19 O -0.35 -6.87 9.63 -50.09 -0.48 -7.36 16 20 C 0.06 0.87 6.85 37.15 0.25 1.12 16 21 C -0.11 -1.45 6.00 -27.87 -0.17 -1.62 16 22 C -0.08 -1.09 5.78 -104.59 -0.60 -1.69 16 23 C -0.12 -1.53 9.67 -39.51 -0.38 -1.92 16 24 C -0.12 -1.49 10.05 -39.64 -0.40 -1.88 16 25 C -0.12 -1.59 10.05 -39.64 -0.40 -1.99 16 26 C -0.11 -1.60 9.08 -39.50 -0.36 -1.96 16 27 C -0.10 -1.70 5.46 -104.61 -0.57 -2.27 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.65 7.28 -51.93 -0.38 1.27 16 34 H 0.11 2.87 5.53 -51.93 -0.29 2.58 16 35 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 36 H 0.09 1.80 7.67 -51.93 -0.40 1.40 16 37 H 0.10 2.00 6.27 -51.93 -0.33 1.67 16 38 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.05 0.73 8.07 -51.93 -0.42 0.31 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 43 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 45 H 0.13 1.91 6.46 -52.49 -0.34 1.57 16 LS Contribution 365.83 15.07 5.51 5.51 Total: -1.00 -31.14 365.83 -8.64 -39.78 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -6.72 Total: 7.23 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.77 Total: -1.46 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.35 Total: -33.30 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.98 Total: -31.95 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.14 -8.64 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457209813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.949 kcal (2) G-P(sol) polarization free energy of solvation -31.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds