Wall clock time and date at job start Tue Mar 31 2020 12:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 114.00040 * 2 1 4 4 C 1.53000 * 109.46858 * 180.02562 * 3 2 1 5 5 N 1.46491 * 109.47437 * 64.99567 * 4 3 2 6 6 C 1.37106 * 119.99761 * 84.94654 * 5 4 3 7 7 H 1.08007 * 119.99640 * 218.03673 * 6 5 4 8 8 C 1.38949 * 120.00105 * 38.30821 * 6 5 4 9 9 N 1.31411 * 119.99974 * 20.91923 * 8 6 5 10 10 Si 1.86803 * 119.99741 * 200.91992 * 8 6 5 11 11 H 1.48504 * 109.46836 * 90.00217 * 10 8 6 12 12 H 1.48493 * 109.47062 * 209.99953 * 10 8 6 13 13 H 1.48495 * 109.47254 * 330.00222 * 10 8 6 14 14 C 1.34777 * 120.00616 * 264.94168 * 5 4 3 15 15 O 1.21298 * 119.99309 * 359.97438 * 14 5 4 16 16 C 1.50693 * 120.00371 * 179.97438 * 14 5 4 17 17 C 1.53000 * 109.47031 * 180.02562 * 16 14 5 18 18 H 1.09000 * 109.33740 * 304.99852 * 17 16 14 19 19 O 1.42723 * 109.33895 * 64.67419 * 17 16 14 20 20 C 1.43165 * 113.17252 * 172.11566 * 19 17 16 21 21 C 1.52976 * 108.32379 * 289.06365 * 20 19 17 22 22 C 1.50745 * 109.75461 * 49.26930 * 21 20 19 23 23 C 1.38596 * 118.75833 * 163.13273 * 22 21 20 24 24 C 1.38065 * 120.27685 * 179.75732 * 23 22 21 25 25 C 1.38263 * 119.86127 * 0.02562 * 24 23 22 26 26 C 1.38057 * 119.89784 * 0.08605 * 25 24 23 27 27 C 1.37903 * 121.35362 * 343.04309 * 22 21 20 28 28 H 1.09006 * 109.46843 * 60.00059 * 1 2 3 29 29 H 1.08995 * 109.47192 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47016 * 300.00621 * 1 2 3 31 31 H 1.09003 * 109.47077 * 59.99800 * 3 2 1 32 32 H 1.09003 * 109.47130 * 299.99441 * 3 2 1 33 33 H 1.09003 * 109.46758 * 304.99478 * 4 3 2 34 34 H 1.08999 * 109.47367 * 185.00377 * 4 3 2 35 35 H 0.96996 * 119.99671 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.47445 * 300.00100 * 16 14 5 37 37 H 1.09002 * 109.47147 * 60.00435 * 16 14 5 38 38 H 1.08996 * 109.67335 * 169.43042 * 20 19 17 39 39 H 1.09002 * 109.73458 * 48.72638 * 20 19 17 40 40 H 1.09002 * 109.42213 * 289.18619 * 21 20 19 41 41 H 1.08996 * 109.37505 * 169.33240 * 21 20 19 42 42 H 1.07998 * 119.85980 * 359.73081 * 23 22 21 43 43 H 1.08001 * 120.07441 * 180.02562 * 24 23 22 44 44 H 1.07996 * 120.05179 * 180.09404 * 25 24 23 45 45 H 1.07991 * 119.85141 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2526 6 6 4.1667 1.3357 -2.3698 7 1 3.8887 0.9563 -3.3420 8 6 4.7232 2.6034 -2.2518 9 7 5.4324 2.9135 -1.1898 10 14 4.4632 3.8670 -3.6029 11 1 3.2346 4.6510 -3.3176 12 1 5.6321 4.7810 -3.6574 13 1 4.3158 3.1734 -4.9076 14 6 4.1931 -0.7648 -1.3063 15 8 4.0246 -1.4472 -0.3178 16 6 4.6454 -1.4030 -2.5944 17 6 4.8165 -2.9089 -2.3849 18 1 5.4960 -3.0823 -1.5504 19 8 3.5477 -3.4922 -2.0903 20 6 3.5799 -4.9231 -2.0554 21 6 3.7609 -5.4351 -3.4856 22 6 4.9028 -4.7064 -4.1469 23 6 5.4621 -5.2452 -5.2949 24 6 6.5059 -4.6015 -5.9290 25 6 6.9958 -3.4145 -5.4163 26 6 6.4409 -2.8783 -4.2716 27 6 5.3928 -3.5239 -3.6336 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8901 33 1 3.8514 0.5681 0.8410 34 1 3.9787 2.1763 0.0890 35 1 5.8211 3.7983 -1.1077 36 1 3.8989 -1.2267 -3.3689 37 1 5.5967 -0.9680 -2.9009 38 1 2.6430 -5.3014 -1.6466 39 1 4.4139 -5.2575 -1.4384 40 1 2.8450 -5.2626 -4.0509 41 1 3.9770 -6.5031 -3.4626 42 1 5.0799 -6.1728 -5.6948 43 1 6.9390 -5.0241 -6.8236 44 1 7.8112 -2.9076 -5.9107 45 1 6.8244 -1.9514 -3.8716 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457209813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:14 Heat of formation + Delta-G solvation = -112.336973 kcal Electronic energy + Delta-G solvation = -27846.061123 eV Core-core repulsion = 24021.125533 eV Total energy + Delta-G solvation = -3824.935590 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.44321 -40.23591 -38.61960 -38.26003 -36.54695 -34.61074 -33.47807 -33.12850 -31.41599 -30.51843 -29.10403 -27.20239 -26.70226 -25.32373 -24.66753 -23.53524 -22.40118 -20.93477 -20.85487 -18.75630 -18.22322 -17.79597 -17.26016 -17.06541 -16.95314 -16.68577 -16.21529 -16.07068 -16.06697 -15.62094 -15.29728 -15.00725 -14.91464 -14.45053 -14.21194 -14.04317 -13.53467 -13.43441 -13.42937 -13.14126 -13.08844 -12.87600 -12.67163 -12.65561 -12.51395 -12.36218 -12.15797 -12.00495 -11.89819 -11.74513 -11.49077 -11.02580 -10.53976 -10.48729 -10.17624 -9.66452 -9.50460 -9.36690 -8.25773 -6.02984 0.39494 0.46699 1.43825 1.49382 1.59381 2.18433 2.34762 2.76970 2.93291 3.00359 3.00997 3.20061 3.71320 3.75119 3.91859 4.04879 4.21731 4.23273 4.27538 4.31097 4.35305 4.39905 4.45540 4.55499 4.57177 4.57352 4.63251 4.69753 4.74072 4.77458 4.79764 4.91785 4.96733 5.01625 5.08794 5.11873 5.20970 5.28921 5.52603 5.55620 5.61725 5.69038 6.09940 6.11232 6.33611 6.39539 6.51811 7.19673 7.69433 8.17973 8.76525 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011679 B = 0.004832 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.864143 B = 5793.826370 C = 7519.857102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.405 6.405 3 C 0.061 3.939 4 C 0.114 3.886 5 N -0.452 5.452 6 C -0.350 4.350 7 H 0.088 0.912 8 C 0.007 3.993 9 N -0.892 5.892 10 Si 0.978 3.022 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.261 1.261 14 C 0.471 3.529 15 O -0.611 6.611 16 C -0.097 4.097 17 C 0.158 3.842 18 H 0.048 0.952 19 O -0.383 6.383 20 C 0.049 3.951 21 C -0.107 4.107 22 C -0.088 4.088 23 C -0.121 4.121 24 C -0.117 4.117 25 C -0.126 4.126 26 C -0.125 4.125 27 C -0.130 4.130 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.105 0.895 35 H 0.273 0.727 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.049 0.951 40 H 0.088 0.912 41 H 0.112 0.888 42 H 0.151 0.849 43 H 0.153 0.847 44 H 0.144 0.856 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.903 -11.137 -8.403 14.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.324 6.324 3 C -0.017 4.017 4 C -0.010 4.010 5 N -0.172 5.172 6 C -0.478 4.478 7 H 0.106 0.894 8 C -0.196 4.196 9 N -0.529 5.529 10 Si 0.802 3.198 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.185 1.185 14 C 0.261 3.739 15 O -0.497 6.497 16 C -0.136 4.136 17 C 0.099 3.901 18 H 0.066 0.934 19 O -0.302 6.302 20 C -0.028 4.028 21 C -0.144 4.144 22 C -0.088 4.088 23 C -0.138 4.138 24 C -0.135 4.135 25 C -0.144 4.144 26 C -0.143 4.143 27 C -0.130 4.130 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.123 0.877 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.131 0.869 42 H 0.168 0.832 43 H 0.171 0.829 44 H 0.162 0.838 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.943 -11.350 -7.792 13.904 hybrid contribution 0.039 1.216 -0.129 1.224 sum -1.904 -10.133 -7.921 13.002 Atomic orbital electron populations 1.22840 0.80663 1.02982 1.00352 1.88094 1.20603 1.28382 1.95355 1.22895 0.94533 0.84476 0.99765 1.21387 0.91779 1.00461 0.87327 1.43460 1.58232 1.05223 1.10285 1.19622 1.41650 0.98898 0.87609 0.89421 1.26126 0.93205 1.00519 0.99723 1.69996 1.29631 1.22065 1.31240 0.85165 0.77781 0.77993 0.78905 1.19879 1.20776 1.18527 1.20816 0.79657 0.83278 0.90171 1.90500 1.57143 1.63374 1.38648 1.21380 1.03293 0.92543 0.96399 1.20366 0.85294 0.91580 0.92815 0.93406 1.88163 1.30016 1.20550 1.91468 1.22810 1.03043 0.80538 0.96388 1.21154 0.96722 1.00817 0.95685 1.19809 0.97746 0.94446 0.96805 1.21367 0.96876 1.01051 0.94549 1.21495 0.96481 0.95053 1.00457 1.21389 1.00591 0.96790 0.95656 1.21272 0.96215 1.00004 0.96802 1.20267 0.98289 0.96692 0.97769 0.94032 0.89445 0.92832 0.91765 0.93789 0.94071 0.87730 0.91772 0.90077 0.87843 0.87196 0.93278 0.89380 0.86933 0.83154 0.82891 0.83847 0.86251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 11.01 113.37 1.25 2.17 16 2 O -0.41 -18.43 10.15 -148.98 -1.51 -19.94 16 3 C 0.06 2.65 6.26 71.98 0.45 3.10 16 4 C 0.11 5.82 5.50 86.38 0.48 6.30 16 5 N -0.45 -24.05 2.48 -635.54 -1.58 -25.63 16 6 C -0.35 -18.04 8.56 84.04 0.72 -17.32 16 7 H 0.09 4.39 7.10 -2.91 -0.02 4.37 16 8 C 0.01 0.36 5.01 84.93 0.43 0.79 16 9 N -0.89 -46.92 11.42 21.66 0.25 -46.67 16 10 Si 0.98 39.11 29.60 68.60 2.03 41.14 16 11 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 12 H -0.28 -11.14 7.11 99.48 0.71 -10.44 16 13 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 14 C 0.47 25.02 7.25 87.65 0.64 25.65 16 15 O -0.61 -35.46 14.66 11.42 0.17 -35.30 16 16 C -0.10 -4.29 3.80 29.85 0.11 -4.18 16 17 C 0.16 6.35 2.28 29.84 0.07 6.42 16 18 H 0.05 2.10 7.95 -2.39 -0.02 2.08 16 19 O -0.38 -15.81 9.63 -134.78 -1.30 -17.10 16 20 C 0.05 1.44 6.85 71.97 0.49 1.93 16 21 C -0.11 -2.50 6.00 29.85 0.18 -2.32 16 22 C -0.09 -2.41 5.78 -19.84 -0.11 -2.52 16 23 C -0.12 -2.57 9.67 22.31 0.22 -2.36 16 24 C -0.12 -2.36 10.05 22.23 0.22 -2.13 16 25 C -0.13 -3.00 10.05 22.23 0.22 -2.77 16 26 C -0.12 -3.77 9.08 22.32 0.20 -3.57 16 27 C -0.13 -4.29 5.46 -19.86 -0.11 -4.40 16 28 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.04 2.23 7.28 -2.39 -0.02 2.21 16 34 H 0.11 5.47 5.53 -2.39 -0.01 5.46 16 35 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 36 H 0.08 3.61 7.67 -2.39 -0.02 3.59 16 37 H 0.10 4.41 6.27 -2.39 -0.01 4.39 16 38 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 39 H 0.05 1.43 8.07 -2.39 -0.02 1.42 16 40 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 43 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 44 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 45 H 0.12 3.70 6.46 -2.92 -0.02 3.68 16 Total: -1.00 -70.15 365.83 4.49 -65.66 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 0.98 Total: 33.05 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 5.45 Total: 4.79 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: -1.33 Total: -72.30 kcal Atomic # 8 Polarization: -69.70 SS G_CDS: -2.64 Total: -72.34 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -70.15 4.49 -65.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457209813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.676 kcal (2) G-P(sol) polarization free energy of solvation -70.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds