Wall clock time and date at job start Tue Mar 31 2020 12:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42893 * 114.00088 * 2 1 4 4 H 1.09000 * 110.56455 * 27.31970 * 3 2 1 5 5 C 1.54488 * 110.51344 * 264.64346 * 3 2 1 6 6 O 1.44424 * 104.80117 * 265.33524 * 5 3 2 7 7 C 1.44639 * 105.36962 * 319.56441 * 6 5 3 8 8 C 1.54483 * 104.70039 * 40.34812 * 7 6 5 9 9 H 1.08993 * 110.50814 * 94.90317 * 8 7 6 10 10 N 1.46498 * 110.51378 * 217.47635 * 8 7 6 11 11 C 1.34769 * 120.00197 * 271.69207 * 10 8 7 12 12 O 1.21277 * 119.99883 * 0.02562 * 11 10 8 13 13 C 1.50705 * 120.00178 * 179.97438 * 11 10 8 14 14 C 1.53000 * 109.47112 * 180.02562 * 13 11 10 15 15 H 1.09005 * 109.46926 * 305.00317 * 14 13 11 16 16 C 1.50697 * 109.47063 * 65.00193 * 14 13 11 17 17 H 1.08009 * 120.00147 * 234.68680 * 16 14 13 18 18 C 1.37874 * 120.00036 * 54.68444 * 16 14 13 19 19 N 1.31518 * 120.00069 * 4.34387 * 18 16 14 20 20 Si 1.86801 * 120.00245 * 184.33982 * 18 16 14 21 21 H 1.48507 * 109.46882 * 90.00074 * 20 18 16 22 22 H 1.48495 * 109.47509 * 210.00105 * 20 18 16 23 23 H 1.48501 * 109.47149 * 330.00327 * 20 18 16 24 24 C 1.50698 * 109.47184 * 185.00227 * 14 13 11 25 25 C 1.38236 * 119.99786 * 331.77793 * 24 14 13 26 26 C 1.38238 * 119.99794 * 179.97438 * 25 24 14 27 27 C 1.38237 * 120.00160 * 359.97438 * 26 25 24 28 28 C 1.38239 * 119.99782 * 359.97438 * 27 26 25 29 29 C 1.38233 * 119.99999 * 151.75249 * 24 14 13 30 30 H 1.09000 * 109.47134 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47062 * 299.99677 * 1 2 3 32 32 H 1.09001 * 109.47150 * 60.00019 * 1 2 3 33 33 H 1.08996 * 110.36665 * 24.16364 * 5 3 2 34 34 H 1.08992 * 110.37138 * 146.39045 * 5 3 2 35 35 H 1.09004 * 110.34221 * 281.59300 * 7 6 5 36 36 H 1.08994 * 110.51245 * 159.19048 * 7 6 5 37 37 H 0.97008 * 119.99825 * 91.69248 * 10 8 7 38 38 H 1.08998 * 109.46677 * 60.00643 * 13 11 10 39 39 H 1.08994 * 109.47281 * 300.00058 * 13 11 10 40 40 H 0.97001 * 119.99899 * 179.97438 * 19 18 16 41 41 H 1.07997 * 120.00221 * 359.96799 * 25 24 14 42 42 H 1.07997 * 119.99626 * 179.97438 * 26 25 24 43 43 H 1.08000 * 120.00002 * 179.72397 * 27 26 25 44 44 H 1.07993 * 119.99698 * 179.97438 * 28 27 26 45 45 H 1.08000 * 120.00386 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3376 2.0240 0.4684 5 6 2.3538 1.7450 -1.4406 6 8 3.7415 1.3851 -1.6151 7 6 4.3848 1.7204 -0.3638 8 6 3.3753 1.2902 0.7236 9 1 3.6058 0.2875 1.0834 10 7 3.3785 2.2459 1.8339 11 6 4.2388 2.0853 2.8588 12 8 5.0107 1.1500 2.8616 13 6 4.2424 3.0688 4.0007 14 6 5.3054 2.6600 5.0224 15 1 5.1313 1.6306 5.3358 16 6 6.6720 2.7704 4.3970 17 1 7.3367 1.9190 4.3978 18 6 7.0739 3.9581 3.8236 19 7 6.3000 5.0190 3.8974 20 14 8.7175 4.0607 2.9420 21 1 8.5326 3.7187 1.5087 22 1 9.2554 5.4401 3.0563 23 1 9.6712 3.1047 3.5599 24 6 5.2265 3.5702 6.2209 25 6 4.7632 4.8646 6.0765 26 6 4.6903 5.6993 7.1759 27 6 5.0802 5.2395 8.4199 28 6 5.5425 3.9448 8.5645 29 6 5.6169 3.1106 7.4648 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.7304 1.2123 -2.1586 34 1 2.2225 2.8214 -1.5503 35 1 4.5686 2.7933 -0.3078 36 1 5.3184 1.1686 -0.2544 37 1 2.7612 2.9942 1.8315 38 1 3.2625 3.0748 4.4780 39 1 4.4679 4.0653 3.6213 40 1 6.5829 5.8547 3.4944 41 1 4.4583 5.2237 5.1047 42 1 4.3287 6.7107 7.0630 43 1 5.0275 5.8931 9.2781 44 1 5.8475 3.5857 9.5363 45 1 5.9781 2.0990 7.5778 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576824670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:05 Heat of formation + Delta-G solvation = -91.481712 kcal Electronic energy + Delta-G solvation = -27395.898645 eV Core-core repulsion = 23571.867407 eV Total energy + Delta-G solvation = -3824.031238 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.15118 -38.75219 -37.92616 -37.07934 -34.49323 -33.85142 -31.12598 -30.19725 -29.80815 -28.85790 -27.95106 -26.72384 -25.73016 -23.13473 -22.51403 -21.53600 -21.06825 -20.17150 -19.28422 -17.21936 -16.98295 -16.40567 -15.96102 -15.85231 -15.50485 -15.28882 -15.14663 -14.91023 -14.21935 -14.07538 -13.89550 -13.82906 -13.61694 -12.89252 -12.77617 -12.29786 -12.23524 -12.15686 -11.79644 -11.75582 -11.63724 -11.50173 -11.36415 -10.99983 -10.91604 -10.80982 -10.44270 -10.19636 -10.14717 -9.96272 -9.65383 -9.33027 -9.21610 -8.86087 -8.58869 -8.43412 -7.82111 -7.45812 -6.00089 -4.09644 2.48022 2.56603 3.22290 3.30390 3.36409 3.42314 3.58573 3.76235 4.14580 4.36277 4.42065 4.70349 4.80598 4.95648 5.04725 5.13065 5.22820 5.23661 5.32440 5.35241 5.45963 5.53711 5.76785 5.80108 5.89249 5.98661 5.99999 6.13750 6.33241 6.43483 6.53765 6.57238 6.69101 6.75908 6.83678 7.06573 7.11177 7.13676 7.24325 7.44641 7.52309 7.66992 7.91543 8.03279 8.14015 8.16029 8.32644 8.87546 9.10823 9.53928 10.94093 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.003943 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.238547 B = 7099.156596 C = 8323.382465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.370 6.370 3 C 0.048 3.952 4 H 0.083 0.917 5 C 0.027 3.973 6 O -0.369 6.369 7 C 0.036 3.964 8 C 0.119 3.881 9 H 0.112 0.888 10 N -0.740 5.740 11 C 0.526 3.474 12 O -0.520 6.520 13 C -0.138 4.138 14 C 0.088 3.912 15 H 0.038 0.962 16 C -0.469 4.469 17 H 0.059 0.941 18 C 0.060 3.940 19 N -0.891 5.891 20 Si 0.891 3.109 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.275 1.275 24 C -0.027 4.027 25 C -0.069 4.069 26 C -0.143 4.143 27 C -0.154 4.154 28 C -0.141 4.141 29 C -0.131 4.131 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.041 0.959 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.394 0.606 38 H 0.053 0.947 39 H 0.134 0.866 40 H 0.260 0.740 41 H 0.140 0.860 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.684 -1.150 -4.923 13.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.289 6.289 3 C -0.011 4.011 4 H 0.100 0.900 5 C -0.050 4.050 6 O -0.287 6.287 7 C -0.042 4.042 8 C 0.013 3.987 9 H 0.129 0.871 10 N -0.397 5.397 11 C 0.315 3.685 12 O -0.393 6.393 13 C -0.178 4.178 14 C 0.068 3.932 15 H 0.056 0.944 16 C -0.507 4.507 17 H 0.078 0.922 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.200 1.200 24 C -0.028 4.028 25 C -0.088 4.088 26 C -0.162 4.162 27 C -0.172 4.172 28 C -0.160 4.160 29 C -0.150 4.150 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.228 0.772 38 H 0.072 0.928 39 H 0.151 0.849 40 H 0.071 0.929 41 H 0.157 0.843 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.849 -1.940 -5.157 13.068 hybrid contribution 0.476 1.034 -0.334 1.186 sum -11.374 -0.906 -5.492 12.662 Atomic orbital electron populations 1.22848 0.80960 1.03032 0.99977 1.88008 1.19664 1.26380 1.94802 1.23747 0.95364 0.85920 0.96103 0.89952 1.23853 0.84866 0.99828 0.96484 1.89194 1.19878 1.85018 1.34611 1.23975 0.97127 1.01078 0.81985 1.22104 0.92235 0.96572 0.87837 0.87056 1.46211 1.41605 1.29774 1.22062 1.21244 0.78282 0.86254 0.82745 1.90630 1.37735 1.32314 1.78635 1.21951 0.98922 1.01861 0.95054 1.17637 0.94239 0.92794 0.88485 0.94398 1.20993 0.99468 0.96951 1.33243 0.92235 1.24875 0.97283 0.95508 0.96277 1.69661 1.37083 1.00955 1.45352 0.86587 0.84333 0.77019 0.80134 1.20816 1.21431 1.19973 1.20331 0.92675 0.95772 0.93991 1.21355 0.96717 0.92822 0.97873 1.21048 1.02604 0.99049 0.93456 1.20770 1.03554 0.95959 0.96943 1.20804 1.02731 0.94625 0.97811 1.20903 1.01828 0.99322 0.92908 0.89397 0.93765 0.94045 0.88615 0.91373 0.91342 0.87868 0.77216 0.92837 0.84880 0.92946 0.84292 0.88097 0.88297 0.88081 0.87634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.85 101.05 1.10 1.34 16 2 O -0.37 -4.65 10.34 -35.23 -0.36 -5.02 16 3 C 0.05 0.56 3.37 -25.16 -0.08 0.47 16 4 H 0.08 0.77 7.36 -51.93 -0.38 0.39 16 5 C 0.03 0.31 7.38 37.94 0.28 0.59 16 6 O -0.37 -5.52 11.65 -35.23 -0.41 -5.93 16 7 C 0.04 0.56 7.37 37.94 0.28 0.84 16 8 C 0.12 1.79 3.25 -66.36 -0.22 1.57 16 9 H 0.11 1.96 7.47 -51.93 -0.39 1.57 16 10 N -0.74 -11.50 5.10 -52.29 -0.27 -11.77 16 11 C 0.53 10.63 7.58 -10.99 -0.08 10.55 16 12 O -0.52 -12.50 14.66 5.56 0.08 -12.41 16 13 C -0.14 -2.82 4.07 -27.88 -0.11 -2.94 16 14 C 0.09 2.06 1.97 -92.93 -0.18 1.87 16 15 H 0.04 0.91 7.91 -51.93 -0.41 0.50 16 16 C -0.47 -12.34 7.27 -34.44 -0.25 -12.59 16 17 H 0.06 1.67 7.82 -52.48 -0.41 1.26 16 18 C 0.06 1.55 5.13 -17.82 -0.09 1.46 16 19 N -0.89 -22.13 7.99 55.43 0.44 -21.69 16 20 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 24 C -0.03 -0.61 4.69 -104.63 -0.49 -1.10 16 25 C -0.07 -1.48 7.47 -39.58 -0.30 -1.78 16 26 C -0.14 -2.79 10.05 -39.58 -0.40 -3.19 16 27 C -0.15 -2.86 10.05 -39.58 -0.40 -3.25 16 28 C -0.14 -2.69 10.05 -39.58 -0.40 -3.09 16 29 C -0.13 -2.77 9.71 -39.58 -0.38 -3.16 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.34 8.11 -51.93 -0.42 -0.08 16 32 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.10 0.94 8.09 -51.93 -0.42 0.52 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 1.05 8.06 -51.93 -0.42 0.63 16 36 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 37 H 0.39 4.89 8.35 -40.82 -0.34 4.55 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.13 2.88 4.68 -51.93 -0.24 2.64 16 40 H 0.26 6.36 8.31 -40.82 -0.34 6.02 16 41 H 0.14 3.01 5.18 -52.49 -0.27 2.74 16 42 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 43 H 0.10 1.56 8.06 -52.49 -0.42 1.13 16 44 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 45 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 365.12 15.07 5.50 5.50 Total: -1.00 -29.96 365.12 -8.41 -38.37 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.65 Total: 9.12 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -1.73 Total: -12.40 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.18 Total: -33.45 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.69 Total: -23.36 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.96 -8.41 -38.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576824670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.112 kcal (2) G-P(sol) polarization free energy of solvation -29.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds