Wall clock time and date at job start Tue Mar 31 2020 12:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99841 * 2 1 4 4 H 1.08994 * 110.56297 * 27.31821 * 3 2 1 5 5 C 1.54484 * 110.51020 * 264.64020 * 3 2 1 6 6 O 1.44426 * 104.80567 * 265.33511 * 5 3 2 7 7 C 1.44648 * 105.36590 * 319.56852 * 6 5 3 8 8 C 1.54473 * 104.69797 * 40.34525 * 7 6 5 9 9 H 1.09000 * 110.51389 * 94.90657 * 8 7 6 10 10 N 1.46508 * 110.51048 * 217.47780 * 8 7 6 11 11 C 1.34774 * 119.99628 * 271.69216 * 10 8 7 12 12 O 1.21280 * 120.00473 * 0.02562 * 11 10 8 13 13 C 1.50703 * 119.99850 * 179.97438 * 11 10 8 14 14 C 1.53000 * 109.47195 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47171 * 55.00038 * 14 13 11 16 16 C 1.50701 * 109.47091 * 294.99703 * 14 13 11 17 17 H 1.08002 * 119.99931 * 328.66766 * 16 14 13 18 18 C 1.37873 * 119.99959 * 148.66382 * 16 14 13 19 19 N 1.31519 * 120.00218 * 5.84885 * 18 16 14 20 20 Si 1.86797 * 120.00123 * 185.84786 * 18 16 14 21 21 H 1.48497 * 109.47281 * 59.99931 * 20 18 16 22 22 H 1.48499 * 109.47428 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46912 * 300.00270 * 20 18 16 24 24 C 1.50703 * 109.47028 * 175.00129 * 14 13 11 25 25 C 1.38228 * 120.00068 * 62.95208 * 24 14 13 26 26 C 1.38236 * 120.00109 * 179.78534 * 25 24 14 27 27 C 1.38237 * 119.99590 * 0.44802 * 26 25 24 28 28 C 1.38228 * 120.00233 * 359.80767 * 27 26 25 29 29 C 1.38235 * 119.99574 * 243.22901 * 24 14 13 30 30 H 1.09003 * 109.46982 * 60.00541 * 1 2 3 31 31 H 1.09003 * 109.46750 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46931 * 300.00084 * 1 2 3 33 33 H 1.09006 * 110.37062 * 24.16706 * 5 3 2 34 34 H 1.08995 * 110.37053 * 146.38939 * 5 3 2 35 35 H 1.08997 * 110.33661 * 281.58968 * 7 6 5 36 36 H 1.08994 * 110.50886 * 159.18812 * 7 6 5 37 37 H 0.97000 * 120.00117 * 91.69135 * 10 8 7 38 38 H 1.08997 * 109.47052 * 60.00173 * 13 11 10 39 39 H 1.09006 * 109.47203 * 300.00249 * 13 11 10 40 40 H 0.96992 * 120.00540 * 179.97438 * 19 18 16 41 41 H 1.08005 * 120.00429 * 359.97438 * 25 24 14 42 42 H 1.07997 * 120.00569 * 180.27552 * 26 25 24 43 43 H 1.08004 * 119.99680 * 179.83027 * 27 26 25 44 44 H 1.08001 * 120.00150 * 180.02562 * 28 27 26 45 45 H 1.08000 * 120.00525 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3376 2.0240 0.4683 5 6 2.3538 1.7450 -1.4406 6 8 3.7416 1.3852 -1.6151 7 6 4.3849 1.7205 -0.3637 8 6 3.3754 1.2904 0.7235 9 1 3.6058 0.2876 1.0834 10 7 3.3784 2.2462 1.8339 11 6 4.2387 2.0856 2.8588 12 8 5.0107 1.1502 2.8617 13 6 4.2423 3.0691 4.0006 14 6 5.3053 2.6604 5.0224 15 1 6.2708 2.5683 4.5252 16 6 4.9285 1.3371 5.6372 17 1 3.8879 1.0736 5.7560 18 6 5.9123 0.4628 6.0480 19 7 7.1750 0.8288 6.0103 20 14 5.4518 -1.2416 6.6581 21 1 4.7440 -1.9786 5.5807 22 1 6.6825 -1.9807 7.0380 23 1 4.5627 -1.1203 7.8414 24 6 5.3939 3.7085 6.1016 25 6 4.3032 3.9592 6.9130 26 6 4.3860 4.9175 7.9058 27 6 5.5565 5.6317 8.0811 28 6 6.6455 5.3848 7.2663 29 6 6.5642 4.4233 6.2763 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.7304 1.2122 -2.1587 34 1 2.2225 2.8214 -1.5504 35 1 4.5685 2.7935 -0.3078 36 1 5.3184 1.1688 -0.2543 37 1 2.7612 2.9945 1.8313 38 1 3.2624 3.0752 4.4779 39 1 4.4678 4.0657 3.6211 40 1 7.8671 0.2139 6.2996 41 1 3.3873 3.4041 6.7733 42 1 3.5353 5.1102 8.5426 43 1 5.6203 6.3823 8.8550 44 1 7.5601 5.9424 7.4036 45 1 7.4150 4.2304 5.6398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576824671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:09 Heat of formation + Delta-G solvation = -120.648531 kcal Electronic energy + Delta-G solvation = -27026.326612 eV Core-core repulsion = 23201.030606 eV Total energy + Delta-G solvation = -3825.296006 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.35869 -40.23794 -39.52151 -38.03739 -35.95106 -35.36469 -33.41824 -31.49625 -31.39942 -30.24575 -29.38375 -27.53030 -27.26112 -24.71090 -23.80510 -23.11149 -22.30966 -21.68924 -20.90309 -18.58460 -18.32187 -18.03461 -17.56679 -17.06967 -16.75113 -16.60152 -16.44636 -16.18790 -15.82107 -15.58213 -15.35893 -15.07980 -15.01504 -14.47893 -14.21656 -13.96356 -13.66960 -13.57887 -13.29621 -13.17935 -13.08346 -12.81575 -12.70107 -12.59135 -12.53748 -12.46649 -11.96403 -11.81337 -11.66148 -11.32152 -11.14701 -10.96159 -10.74773 -10.57947 -10.36964 -9.95000 -9.51315 -9.16511 -8.04163 -6.06251 0.80727 0.86944 1.34264 1.39472 1.43474 1.92121 2.05016 2.45886 2.78612 3.02897 3.20701 3.34966 3.37724 3.74591 3.80106 4.10689 4.15506 4.23247 4.27894 4.37933 4.42769 4.46848 4.51072 4.55097 4.57301 4.65998 4.71577 4.74815 4.75960 4.83254 4.85171 4.95905 5.02011 5.25091 5.40094 5.41799 5.54883 5.65157 5.67617 5.79859 5.86481 5.98003 6.18824 6.19385 6.43229 6.48919 6.72373 7.01401 7.55285 7.57594 9.05009 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012495 B = 0.003746 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.447331 B = 7473.040276 C = 8446.519311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.404 6.404 3 C 0.055 3.945 4 H 0.115 0.885 5 C 0.026 3.974 6 O -0.389 6.389 7 C 0.043 3.957 8 C 0.113 3.887 9 H 0.069 0.931 10 N -0.715 5.715 11 C 0.513 3.487 12 O -0.553 6.553 13 C -0.114 4.114 14 C 0.083 3.917 15 H 0.022 0.978 16 C -0.484 4.484 17 H 0.047 0.953 18 C 0.023 3.977 19 N -0.916 5.916 20 Si 0.931 3.069 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.265 1.265 24 C -0.042 4.042 25 C -0.127 4.127 26 C -0.127 4.127 27 C -0.149 4.149 28 C -0.130 4.130 29 C -0.142 4.142 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.416 0.584 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.253 0.747 41 H 0.117 0.883 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.130 0.870 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.734 10.254 -9.434 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.324 6.324 3 C -0.004 4.004 4 H 0.133 0.867 5 C -0.050 4.050 6 O -0.308 6.308 7 C -0.035 4.035 8 C 0.006 3.994 9 H 0.088 0.912 10 N -0.373 5.373 11 C 0.301 3.699 12 O -0.428 6.428 13 C -0.154 4.154 14 C 0.064 3.936 15 H 0.040 0.960 16 C -0.522 4.522 17 H 0.065 0.935 18 C -0.176 4.176 19 N -0.556 5.556 20 Si 0.758 3.242 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.190 1.190 24 C -0.043 4.043 25 C -0.145 4.145 26 C -0.145 4.145 27 C -0.166 4.166 28 C -0.148 4.148 29 C -0.160 4.160 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.127 0.873 34 H 0.119 0.881 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.254 0.746 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.062 0.938 41 H 0.135 0.865 42 H 0.158 0.842 43 H 0.160 0.840 44 H 0.148 0.852 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.791 9.229 -9.576 19.159 hybrid contribution -0.008 -1.122 0.539 1.245 sum -13.798 8.106 -9.038 18.379 Atomic orbital electron populations 1.23073 0.78794 1.04044 1.01495 1.87993 1.22118 1.27255 1.94987 1.23738 0.93852 0.86466 0.96334 0.86722 1.24139 0.82920 1.01923 0.96052 1.89182 1.21996 1.85589 1.34021 1.23790 0.96208 1.01242 0.82265 1.22099 0.95218 0.94475 0.87605 0.91249 1.45829 1.40594 1.30168 1.20675 1.21165 0.79403 0.86201 0.83113 1.90765 1.40501 1.33265 1.78276 1.21681 1.02470 0.97242 0.94030 1.17610 0.94789 0.91076 0.90157 0.95999 1.20961 0.91665 1.00958 1.38575 0.93525 1.25455 0.95209 1.00630 0.96264 1.70036 1.00058 1.36258 1.49215 0.86041 0.77430 0.82209 0.78487 1.21223 1.21537 1.19040 1.20517 0.93185 0.92706 0.97862 1.21036 0.98716 0.98293 0.96450 1.21366 0.98771 0.96392 0.97960 1.21250 0.93322 1.01525 1.00538 1.21277 0.99407 0.98195 0.95872 1.21091 0.97503 0.97425 0.99987 0.91606 0.88980 0.92916 0.87293 0.88060 0.89733 0.90297 0.74590 0.88179 0.88392 0.93810 0.86529 0.84200 0.84010 0.85214 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.85 113.37 1.23 1.55 16 2 O -0.40 -9.82 10.34 -148.98 -1.54 -11.36 16 3 C 0.05 1.11 3.37 31.61 0.11 1.21 16 4 H 0.12 1.53 7.36 -2.39 -0.02 1.51 16 5 C 0.03 0.46 7.38 72.49 0.54 1.00 16 6 O -0.39 -10.36 11.65 -148.98 -1.74 -12.10 16 7 C 0.04 1.18 7.37 72.48 0.53 1.72 16 8 C 0.11 3.20 3.25 46.00 0.15 3.35 16 9 H 0.07 2.64 7.47 -2.39 -0.02 2.63 16 10 N -0.72 -19.35 5.10 -437.72 -2.23 -21.59 16 11 C 0.51 19.87 7.58 87.66 0.66 20.53 16 12 O -0.55 -28.52 14.66 -3.03 -0.04 -28.56 16 13 C -0.11 -4.16 4.94 29.85 0.15 -4.02 16 14 C 0.08 4.00 1.63 -12.28 -0.02 3.98 16 15 H 0.02 1.25 7.06 -2.39 -0.02 1.24 16 16 C -0.48 -26.47 6.39 25.60 0.16 -26.31 16 17 H 0.05 2.51 7.82 -2.91 -0.02 2.49 16 18 C 0.02 1.35 5.45 84.65 0.46 1.81 16 19 N -0.92 -56.53 12.91 21.45 0.28 -56.25 16 20 Si 0.93 47.32 29.54 68.60 2.03 49.35 16 21 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 22 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 23 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 24 C -0.04 -1.84 4.77 -19.87 -0.09 -1.94 16 25 C -0.13 -4.82 8.86 22.27 0.20 -4.62 16 26 C -0.13 -4.04 10.05 22.27 0.22 -3.82 16 27 C -0.15 -4.55 10.05 22.27 0.22 -4.33 16 28 C -0.13 -4.51 10.05 22.27 0.22 -4.28 16 29 C -0.14 -6.02 9.67 22.27 0.22 -5.80 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 0.69 8.11 -2.39 -0.02 0.67 16 33 H 0.11 1.66 8.09 -2.38 -0.02 1.64 16 34 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.98 8.06 -2.39 -0.02 1.96 16 36 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.42 7.35 8.35 -92.71 -0.77 6.57 16 38 H 0.10 3.19 7.74 -2.39 -0.02 3.18 16 39 H 0.10 2.95 8.14 -2.38 -0.02 2.93 16 40 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 41 H 0.12 4.22 7.75 -2.91 -0.02 4.20 16 42 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 43 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 44 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 45 H 0.09 4.19 7.95 -2.91 -0.02 4.17 16 Total: -1.00 -78.81 376.12 1.92 -76.88 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.21 Total: 23.58 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 4.96 Total: -19.95 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -1.95 Total: -77.84 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -3.32 Total: -52.02 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -78.81 1.92 -76.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576824671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.764 kcal (2) G-P(sol) polarization free energy of solvation -78.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds