Wall clock time and date at job start Tue Mar 31 2020 12:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00076 * 2 1 4 4 H 1.08997 * 109.56966 * 29.84676 * 3 2 1 5 5 C 1.53103 * 109.60181 * 269.72705 * 3 2 1 6 6 O 1.42902 * 109.49031 * 182.57924 * 5 3 2 7 7 C 1.42899 * 114.09688 * 61.10811 * 6 5 3 8 8 C 1.53091 * 109.41719 * 298.84373 * 7 6 5 9 9 C 1.53179 * 109.52011 * 150.00457 * 3 2 1 10 10 H 1.09000 * 109.54724 * 56.93362 * 9 3 2 11 11 C 1.53004 * 109.54163 * 296.75374 * 9 3 2 12 12 C 1.50705 * 109.46791 * 175.18148 * 11 9 3 13 13 O 1.21278 * 120.00337 * 359.97438 * 12 11 9 14 14 N 1.34776 * 119.99764 * 180.02562 * 12 11 9 15 15 C 1.39121 * 120.00147 * 185.14788 * 14 12 11 16 16 C 1.38644 * 120.28129 * 20.73838 * 15 14 12 17 17 C 1.38227 * 120.03488 * 180.02562 * 16 15 14 18 18 C 1.38864 * 120.61320 * 359.97438 * 17 16 15 19 19 C 1.36471 * 120.58048 * 359.97438 * 18 17 16 20 20 C 1.40739 * 119.93747 * 0.02562 * 19 18 17 21 21 C 1.41072 * 120.29387 * 179.97438 * 20 19 18 22 22 H 1.08003 * 119.99559 * 211.93721 * 21 20 19 23 23 C 1.39960 * 120.00518 * 31.94191 * 21 20 19 24 24 N 1.30844 * 119.99535 * 14.87646 * 23 21 20 25 25 Si 1.86802 * 119.99873 * 194.88491 * 23 21 20 26 26 H 1.48498 * 109.46952 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47071 * 119.99609 * 25 23 21 28 28 H 1.48505 * 109.46706 * 239.99654 * 25 23 21 29 29 H 1.08998 * 109.46766 * 299.99531 * 1 2 3 30 30 H 1.09000 * 109.47231 * 59.99887 * 1 2 3 31 31 H 1.08997 * 109.47139 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.48306 * 62.54585 * 5 3 2 33 33 H 1.09005 * 109.41381 * 302.56789 * 5 3 2 34 34 H 1.09003 * 109.47917 * 178.86226 * 7 6 5 35 35 H 1.09002 * 109.47776 * 58.82898 * 7 6 5 36 36 H 1.08996 * 109.52310 * 297.70330 * 8 7 6 37 37 H 1.09005 * 109.51942 * 177.51192 * 8 7 6 38 38 H 1.08989 * 109.47188 * 55.17989 * 11 9 3 39 39 H 1.08999 * 109.47285 * 295.17571 * 11 9 3 40 40 H 0.97007 * 120.00382 * 5.15003 * 14 12 11 41 41 H 1.08002 * 119.98557 * 0.02562 * 16 15 14 42 42 H 1.08001 * 119.69730 * 180.02562 * 17 16 15 43 43 H 1.08003 * 119.71397 * 180.27608 * 18 17 16 44 44 H 1.07994 * 120.02904 * 180.02562 * 19 18 17 45 45 H 0.97006 * 119.99495 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 2.0013 0.5111 5 6 2.2254 1.7719 -1.4423 6 8 2.8615 3.0515 -1.4397 7 6 4.1492 3.0617 -0.8202 8 6 4.0111 2.6493 0.6477 9 6 3.3607 1.2644 0.7218 10 1 4.0086 0.5311 0.2417 11 6 3.1466 0.8773 2.1865 12 6 4.4830 0.7219 2.8654 13 8 5.5059 0.9025 2.2394 14 7 4.5415 0.3812 4.1681 15 6 5.7685 0.3421 4.8225 16 6 6.8544 1.0385 4.3144 17 6 8.0713 0.9958 4.9685 18 6 8.2210 0.2595 6.1363 19 6 7.1686 -0.4346 6.6591 20 6 5.9188 -0.4076 6.0126 21 6 4.8261 -1.1227 6.5462 22 1 4.0799 -1.5401 5.8863 23 6 4.7088 -1.2913 7.9307 24 7 5.4274 -0.5583 8.7420 25 14 3.5265 -2.5627 8.6199 26 1 2.8366 -3.2546 7.5017 27 1 4.2816 -3.5551 9.4261 28 1 2.5209 -1.8885 9.4799 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.2627 1.8455 -1.9480 33 1 2.8566 1.0532 -1.9651 34 1 4.5723 4.0646 -0.8777 35 1 4.8056 2.3599 -1.3347 36 1 3.3875 3.3732 1.1723 37 1 4.9974 2.6137 1.1103 38 1 2.6015 -0.0652 2.2372 39 1 2.5727 1.6564 2.6881 40 1 3.7280 0.1631 4.6494 41 1 6.7493 1.6148 3.4070 42 1 8.9134 1.5407 4.5680 43 1 9.1772 0.2398 6.6379 44 1 7.2949 -1.0039 7.5681 45 1 5.3464 -0.6754 9.7016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581893938.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:02 Heat of formation + Delta-G solvation = -130.691651 kcal Electronic energy + Delta-G solvation = -27123.755741 eV Core-core repulsion = 23298.024233 eV Total energy + Delta-G solvation = -3825.731508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.56122 -40.54904 -38.93989 -38.24877 -35.59630 -35.47713 -35.08502 -31.55500 -31.42879 -30.92238 -29.24193 -27.46882 -27.07018 -24.92459 -24.08748 -23.32962 -22.40238 -21.25632 -20.86221 -19.22715 -18.34980 -18.03687 -17.60957 -17.34594 -16.90516 -16.66199 -16.53025 -16.14734 -15.90371 -15.85233 -15.21224 -14.85735 -14.72821 -14.46466 -14.26302 -14.06763 -13.84588 -13.62483 -13.42193 -13.24233 -13.19249 -12.85462 -12.75005 -12.53188 -12.25884 -12.14211 -11.99899 -11.96888 -11.68595 -11.50813 -11.41360 -11.09123 -11.03776 -10.97004 -10.39862 -10.09229 -9.29091 -8.77580 -8.48079 -6.29952 0.84557 1.05555 1.42095 1.51396 1.55555 1.89933 2.22627 2.42697 2.58475 2.79178 3.07939 3.59615 3.64833 3.72522 3.80391 3.97486 4.09958 4.19826 4.32305 4.40926 4.47898 4.51672 4.53675 4.59615 4.63789 4.72881 4.75423 4.77642 4.84021 4.86392 4.92482 5.02605 5.08548 5.19872 5.23604 5.26043 5.30774 5.47630 5.80993 5.82808 6.01803 6.13269 6.18378 6.26895 6.33561 6.65789 6.77877 6.96493 7.04161 7.43157 8.39334 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014613 B = 0.003523 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.652658 B = 7946.261324 C = 9619.952613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.397 6.397 3 C 0.067 3.933 4 H 0.083 0.917 5 C 0.042 3.958 6 O -0.389 6.389 7 C 0.060 3.940 8 C -0.150 4.150 9 C -0.065 4.065 10 H 0.065 0.935 11 C -0.120 4.120 12 C 0.496 3.504 13 O -0.563 6.563 14 N -0.639 5.639 15 C 0.020 3.980 16 C -0.120 4.120 17 C -0.223 4.223 18 C -0.125 4.125 19 C -0.167 4.167 20 C 0.072 3.928 21 C -0.498 4.498 22 H 0.082 0.918 23 C 0.040 3.960 24 N -0.831 5.831 25 Si 0.979 3.021 26 H -0.256 1.256 27 H -0.272 1.272 28 H -0.267 1.267 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.054 0.946 34 H 0.110 0.890 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.412 0.588 41 H 0.128 0.872 42 H 0.114 0.886 43 H 0.110 0.890 44 H 0.098 0.902 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.585 3.477 -13.406 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.316 6.316 3 C 0.009 3.991 4 H 0.101 0.899 5 C -0.035 4.035 6 O -0.308 6.308 7 C -0.016 4.016 8 C -0.187 4.187 9 C -0.084 4.084 10 H 0.084 0.916 11 C -0.160 4.160 12 C 0.286 3.714 13 O -0.444 6.444 14 N -0.281 5.281 15 C -0.075 4.075 16 C -0.140 4.140 17 C -0.242 4.242 18 C -0.144 4.144 19 C -0.188 4.188 20 C 0.068 3.932 21 C -0.528 4.528 22 H 0.100 0.900 23 C -0.174 4.174 24 N -0.457 5.457 25 Si 0.800 3.200 26 H -0.179 1.179 27 H -0.197 1.197 28 H -0.192 1.192 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.130 0.870 33 H 0.072 0.928 34 H 0.128 0.872 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.249 0.751 41 H 0.146 0.854 42 H 0.133 0.867 43 H 0.128 0.872 44 H 0.116 0.884 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.867 3.672 -13.703 17.870 hybrid contribution -0.389 -0.763 1.174 1.453 sum -11.256 2.909 -12.529 17.092 Atomic orbital electron populations 1.23039 0.79357 1.03928 1.01160 1.87925 1.21529 1.27100 1.95080 1.22745 0.94453 0.85422 0.96460 0.89891 1.23082 0.99152 0.85296 0.96009 1.87912 1.32828 1.30672 1.79368 1.22686 0.84338 1.03079 0.91485 1.22327 1.02712 0.95485 0.98205 1.20963 0.95673 0.98045 0.93765 0.91634 1.21640 0.93219 1.05501 0.95652 1.21347 0.92682 0.76373 0.81002 1.90517 1.37475 1.51690 1.64724 1.43076 1.08626 1.65923 1.10438 1.18070 0.86992 1.03579 0.98903 1.21198 0.92816 0.99594 1.00376 1.20685 0.97615 1.07231 0.98688 1.20704 0.98234 0.98899 0.96520 1.20791 0.92594 1.04007 1.01370 1.17686 0.93704 0.90685 0.91120 1.19507 1.08465 1.32285 0.92545 0.90019 1.26637 0.97497 0.96262 0.97032 1.69884 1.36812 1.33723 1.05299 0.85203 0.78017 0.78083 0.78682 1.17893 1.19704 1.19169 0.92944 0.92678 0.88621 0.87014 0.92808 0.87161 0.93111 0.90568 0.90251 0.87286 0.86908 0.75096 0.85429 0.86750 0.87174 0.88404 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.82 113.37 1.23 1.50 16 2 O -0.40 -8.07 9.75 -148.98 -1.45 -9.52 16 3 C 0.07 1.32 2.21 30.69 0.07 1.39 16 4 H 0.08 1.42 7.79 -2.39 -0.02 1.40 16 5 C 0.04 0.78 6.47 72.02 0.47 1.25 16 6 O -0.39 -8.46 10.77 -148.98 -1.60 -10.06 16 7 C 0.06 1.28 6.84 72.01 0.49 1.77 16 8 C -0.15 -3.58 5.13 30.69 0.16 -3.42 16 9 C -0.07 -1.59 1.64 -10.67 -0.02 -1.61 16 10 H 0.07 1.91 7.96 -2.39 -0.02 1.89 16 11 C -0.12 -3.06 5.12 29.85 0.15 -2.91 16 12 C 0.50 17.83 7.41 87.66 0.65 18.47 16 13 O -0.56 -23.38 10.92 -3.02 -0.03 -23.42 16 14 N -0.64 -25.72 5.17 -302.29 -1.56 -27.28 16 15 C 0.02 0.96 6.52 38.88 0.25 1.21 16 16 C -0.12 -5.77 8.76 22.36 0.20 -5.58 16 17 C -0.22 -10.35 10.04 22.42 0.22 -10.13 16 18 C -0.12 -5.98 9.97 22.01 0.22 -5.76 16 19 C -0.17 -8.84 8.59 22.47 0.19 -8.65 16 20 C 0.07 3.78 5.50 -21.18 -0.12 3.66 16 21 C -0.50 -25.06 8.23 23.38 0.19 -24.87 16 22 H 0.08 3.86 7.29 -2.91 -0.02 3.84 16 23 C 0.04 1.94 5.15 85.26 0.44 2.38 16 24 N -0.83 -42.26 11.30 21.83 0.25 -42.01 16 25 Si 0.98 36.43 29.59 68.60 2.03 38.46 16 26 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 27 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 28 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 29 H 0.05 0.60 8.09 -2.39 -0.02 0.58 16 30 H 0.05 0.56 7.96 -2.39 -0.02 0.54 16 31 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.11 1.62 7.96 -2.39 -0.02 1.60 16 33 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.08 2.33 6.05 -2.38 -0.01 2.32 16 38 H 0.11 2.59 7.65 -2.39 -0.02 2.57 16 39 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.41 15.04 7.50 -92.70 -0.70 14.35 16 41 H 0.13 6.02 5.48 -2.91 -0.02 6.01 16 42 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16 43 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 44 H 0.10 5.34 6.62 -2.91 -0.02 5.32 16 45 H 0.29 13.23 8.30 -92.70 -0.77 12.46 16 Total: -1.00 -63.23 360.84 2.73 -60.50 By element: Atomic # 1 Polarization: 44.32 SS G_CDS: 0.31 Total: 44.62 kcal Atomic # 6 Polarization: -36.07 SS G_CDS: 4.80 Total: -31.28 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: -1.32 Total: -69.30 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -3.09 Total: -43.00 kcal Atomic # 14 Polarization: 36.43 SS G_CDS: 2.03 Total: 38.46 kcal Total: -63.23 2.73 -60.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581893938.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.196 kcal (2) G-P(sol) polarization free energy of solvation -63.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds