Wall clock time and date at job start Tue Mar 31 2020 12:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00131 * 2 1 4 4 H 1.08994 * 109.57344 * 29.84338 * 3 2 1 5 5 C 1.53100 * 109.45705 * 269.63280 * 3 2 1 6 6 O 1.42903 * 109.48994 * 297.62034 * 5 3 2 7 7 C 1.42903 * 114.09289 * 298.88253 * 6 5 3 8 8 C 1.53087 * 109.41489 * 61.16169 * 7 6 5 9 9 C 1.53178 * 109.52270 * 150.00099 * 3 2 1 10 10 H 1.08996 * 109.54868 * 182.88339 * 9 3 2 11 11 C 1.53000 * 109.54181 * 303.06097 * 9 3 2 12 12 C 1.50706 * 109.46962 * 184.82374 * 11 9 3 13 13 O 1.21277 * 120.00022 * 359.97438 * 12 11 9 14 14 N 1.34777 * 119.99914 * 179.97438 * 12 11 9 15 15 C 1.39121 * 120.00189 * 174.84418 * 14 12 11 16 16 C 1.38649 * 120.28396 * 339.26084 * 15 14 12 17 17 C 1.38221 * 120.03309 * 179.97438 * 16 15 14 18 18 C 1.38864 * 120.61821 * 0.02562 * 17 16 15 19 19 C 1.36460 * 120.57639 * 359.97438 * 18 17 16 20 20 C 1.40738 * 119.94504 * 359.97438 * 19 18 17 21 21 C 1.41073 * 120.30377 * 180.02562 * 20 19 18 22 22 H 1.07995 * 120.00108 * 148.05784 * 21 20 19 23 23 C 1.39959 * 119.99725 * 328.05915 * 21 20 19 24 24 N 1.30853 * 119.99966 * 345.12563 * 23 21 20 25 25 Si 1.86803 * 119.99657 * 165.12457 * 23 21 20 26 26 H 1.48493 * 109.46949 * 90.00219 * 25 23 21 27 27 H 1.48503 * 109.46851 * 210.00374 * 25 23 21 28 28 H 1.48495 * 109.47120 * 329.99709 * 25 23 21 29 29 H 1.09002 * 109.47017 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46901 * 299.99697 * 1 2 3 31 31 H 1.09001 * 109.47212 * 60.00049 * 1 2 3 32 32 H 1.08999 * 109.41439 * 177.63164 * 5 3 2 33 33 H 1.09000 * 109.47854 * 57.64323 * 5 3 2 34 34 H 1.08996 * 109.48377 * 301.17557 * 7 6 5 35 35 H 1.09002 * 109.48629 * 181.14756 * 7 6 5 36 36 H 1.09003 * 109.52472 * 182.48551 * 8 7 6 37 37 H 1.08997 * 109.52759 * 62.29477 * 8 7 6 38 38 H 1.08997 * 109.47443 * 64.82324 * 11 9 3 39 39 H 1.09000 * 109.47207 * 304.81694 * 11 9 3 40 40 H 0.97006 * 120.00098 * 354.84984 * 14 12 11 41 41 H 1.07995 * 119.98071 * 359.97438 * 16 15 14 42 42 H 1.08005 * 119.69485 * 179.97438 * 17 16 15 43 43 H 1.08000 * 119.71342 * 179.70411 * 18 17 16 44 44 H 1.08003 * 120.03317 * 179.97438 * 19 18 17 45 45 H 0.96997 * 119.99315 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 2.0013 0.5110 5 6 2.2261 1.7675 -1.4435 6 8 3.1454 0.8874 -2.0935 7 6 4.4399 0.8463 -1.4895 8 6 4.3134 0.3451 -0.0485 9 6 3.3606 1.2645 0.7218 10 1 3.7806 2.2692 0.7670 11 6 3.1663 0.7267 2.1410 12 6 4.4730 0.7979 2.8885 13 8 5.4623 1.2352 2.3400 14 7 4.5421 0.3756 4.1665 15 6 5.7686 0.3405 4.8222 16 6 6.9493 0.3143 4.0958 17 6 8.1650 0.2800 4.7526 18 6 8.2192 0.2709 6.1401 19 6 7.0727 0.2962 6.8798 20 6 5.8219 0.3324 6.2358 21 6 4.6319 0.3592 6.9931 22 1 3.7635 0.8789 6.6161 23 6 4.5768 -0.2877 8.2330 24 7 5.5039 -1.1503 8.5626 25 14 3.1797 0.0804 9.4171 26 1 2.0537 -0.8528 9.1595 27 1 3.6559 -0.0917 10.8132 28 1 2.7192 1.4783 9.2201 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.6303 2.7798 -1.4433 33 1 1.2745 1.7561 -1.9750 34 1 4.8731 1.8465 -1.4897 35 1 5.0833 0.1714 -2.0540 36 1 5.2937 0.3548 0.4280 37 1 3.9180 -0.6707 -0.0495 38 1 2.8305 -0.3092 2.0942 39 1 2.4187 1.3281 2.6582 40 1 3.7366 0.0959 4.6292 41 1 6.9190 0.3206 3.0163 42 1 9.0813 0.2593 4.1813 43 1 9.1770 0.2392 6.6382 44 1 7.1251 0.2884 7.9585 45 1 5.4658 -1.5983 9.4221 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581893940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:12 Heat of formation + Delta-G solvation = -111.076870 kcal Electronic energy + Delta-G solvation = -27219.083331 eV Core-core repulsion = 23394.202384 eV Total energy + Delta-G solvation = -3824.880948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.31835 -39.28910 -37.22723 -37.06672 -34.22301 -33.70417 -33.59073 -30.58981 -29.70525 -29.47204 -27.76985 -26.74146 -25.24464 -23.72081 -23.40569 -21.59710 -20.69858 -19.94165 -19.28940 -17.42031 -16.86534 -16.65493 -16.51642 -16.18676 -15.65976 -15.49206 -15.25727 -14.93622 -14.69530 -14.25478 -14.02363 -13.82904 -13.18328 -12.95880 -12.86803 -12.65874 -12.56857 -12.27228 -12.03725 -11.86472 -11.54569 -11.46028 -11.41277 -11.18538 -11.02579 -10.95696 -10.71506 -10.52827 -10.35068 -10.14334 -10.10251 -9.71134 -9.37188 -9.24414 -9.16619 -8.62631 -7.37458 -6.95294 -6.67267 -4.40434 2.59642 2.84676 3.02968 3.06335 3.18233 3.49802 3.52960 3.87131 3.88787 3.93112 4.57672 4.61999 4.66092 4.81480 4.87677 5.07563 5.15903 5.22804 5.27826 5.35892 5.37480 5.51327 5.52534 5.54327 5.63234 5.65222 5.82633 5.97220 6.02657 6.25558 6.33709 6.44303 6.54855 6.60483 6.90020 6.96282 7.06792 7.12647 7.22701 7.28861 7.65259 7.68050 7.95052 8.08316 8.11535 8.44552 8.54850 8.80349 8.84000 9.03286 10.17630 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015392 B = 0.003470 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.646559 B = 8066.644696 C = 9604.354637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.367 6.367 3 C 0.057 3.943 4 H 0.069 0.931 5 C 0.043 3.957 6 O -0.376 6.376 7 C 0.062 3.938 8 C -0.151 4.151 9 C -0.065 4.065 10 H 0.090 0.910 11 C -0.131 4.131 12 C 0.496 3.504 13 O -0.539 6.539 14 N -0.635 5.635 15 C 0.024 3.976 16 C -0.105 4.105 17 C -0.219 4.219 18 C -0.119 4.119 19 C -0.144 4.144 20 C 0.101 3.899 21 C -0.478 4.478 22 H 0.074 0.926 23 C 0.080 3.920 24 N -0.797 5.797 25 Si 0.905 3.095 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.262 1.262 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.405 0.595 41 H 0.125 0.875 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.113 0.887 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.504 3.287 -12.695 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.286 6.286 3 C -0.002 4.002 4 H 0.087 0.913 5 C -0.034 4.034 6 O -0.295 6.295 7 C -0.015 4.015 8 C -0.189 4.189 9 C -0.084 4.084 10 H 0.108 0.892 11 C -0.171 4.171 12 C 0.283 3.717 13 O -0.419 6.419 14 N -0.276 5.276 15 C -0.070 4.070 16 C -0.125 4.125 17 C -0.239 4.239 18 C -0.137 4.137 19 C -0.164 4.164 20 C 0.098 3.902 21 C -0.508 4.508 22 H 0.092 0.908 23 C -0.138 4.138 24 N -0.423 5.423 25 Si 0.729 3.271 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.186 1.186 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.240 0.760 41 H 0.143 0.857 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.131 0.869 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.717 3.129 -13.068 16.017 hybrid contribution -1.234 0.287 1.325 1.833 sum -9.951 3.415 -11.743 15.767 Atomic orbital electron populations 1.22798 0.81620 1.02770 0.99598 1.88003 1.18961 1.26710 1.94890 1.22900 0.95412 0.85726 0.96117 0.91276 1.23002 0.94138 0.93140 0.93151 1.87924 1.22445 1.65401 1.53692 1.22621 0.84290 1.00634 0.93942 1.22289 1.01753 0.99693 0.95122 1.21010 0.93312 1.01011 0.93057 0.89200 1.21614 0.96041 1.04242 0.95223 1.20549 0.90584 0.78266 0.82266 1.90533 1.37410 1.46060 1.67909 1.43009 1.10178 1.62197 1.12228 1.17885 0.83814 1.13755 0.91582 1.20999 0.91123 1.00701 0.99639 1.20362 0.95948 1.13584 0.93992 1.20464 0.97114 1.02234 0.93933 1.20754 0.91107 1.05374 0.99118 1.17337 0.93852 0.90518 0.88543 1.19221 0.98336 1.31020 1.02234 0.90763 1.25804 0.96895 0.92910 0.98148 1.69812 1.32331 1.18526 1.21613 0.86371 0.81175 0.79982 0.79527 1.19568 1.20125 1.18616 0.89663 0.94107 0.94382 0.92409 0.89144 0.93311 0.88969 0.88543 0.90878 0.88300 0.89546 0.75952 0.85718 0.89202 0.89430 0.86940 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.33 16 2 O -0.37 -4.26 9.08 -42.62 -0.39 -4.64 16 3 C 0.06 0.60 2.44 -26.59 -0.06 0.53 16 4 H 0.07 0.60 7.79 -51.93 -0.40 0.20 16 5 C 0.04 0.44 6.48 37.21 0.24 0.68 16 6 O -0.38 -4.80 10.70 -42.62 -0.46 -5.26 16 7 C 0.06 0.74 6.84 37.20 0.25 0.99 16 8 C -0.15 -2.03 4.97 -26.59 -0.13 -2.16 16 9 C -0.07 -0.81 1.75 -90.43 -0.16 -0.97 16 10 H 0.09 1.16 7.96 -51.93 -0.41 0.75 16 11 C -0.13 -1.75 4.93 -27.88 -0.14 -1.89 16 12 C 0.50 8.94 7.41 -10.98 -0.08 8.86 16 13 O -0.54 -11.04 10.92 5.56 0.06 -10.98 16 14 N -0.64 -12.77 5.17 -9.47 -0.05 -12.82 16 15 C 0.02 0.57 6.52 -83.17 -0.54 0.03 16 16 C -0.10 -2.51 8.76 -39.44 -0.35 -2.85 16 17 C -0.22 -5.11 10.04 -39.36 -0.39 -5.51 16 18 C -0.12 -2.82 9.97 -39.99 -0.40 -3.22 16 19 C -0.14 -3.69 8.59 -39.28 -0.34 -4.02 16 20 C 0.10 2.60 5.50 -106.65 -0.59 2.02 16 21 C -0.48 -11.86 8.23 -37.86 -0.31 -12.17 16 22 H 0.07 1.73 7.30 -52.49 -0.38 1.35 16 23 C 0.08 1.92 5.15 -17.32 -0.09 1.83 16 24 N -0.80 -20.02 11.30 55.55 0.63 -19.39 16 25 Si 0.90 17.86 29.59 -169.99 -5.03 12.83 16 26 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 27 H -0.28 -5.42 7.11 56.52 0.40 -5.01 16 28 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.30 8.09 -51.93 -0.42 -0.12 16 31 H 0.04 0.27 7.86 -51.93 -0.41 -0.14 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.78 7.86 -51.93 -0.41 0.37 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.10 1.50 6.05 -51.93 -0.31 1.18 16 37 H 0.07 1.04 7.84 -51.93 -0.41 0.64 16 38 H 0.10 1.29 7.77 -51.93 -0.40 0.89 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.40 7.43 7.51 -40.82 -0.31 7.13 16 41 H 0.13 2.93 5.48 -52.49 -0.29 2.65 16 42 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 43 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 44 H 0.11 2.95 6.62 -52.48 -0.35 2.60 16 45 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 LS Contribution 359.70 15.07 5.42 5.42 Total: -1.00 -29.50 359.70 -8.40 -37.90 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -6.60 Total: 13.47 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -1.99 Total: -16.53 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.58 Total: -32.21 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.78 Total: -20.88 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.50 -8.40 -37.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581893940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.178 kcal (2) G-P(sol) polarization free energy of solvation -29.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds