Wall clock time and date at job start Tue Mar 31 2020 12:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00131 * 2 1 4 4 H 1.08994 * 109.57344 * 29.84338 * 3 2 1 5 5 C 1.53100 * 109.45705 * 269.63280 * 3 2 1 6 6 O 1.42903 * 109.48994 * 297.62034 * 5 3 2 7 7 C 1.42903 * 114.09289 * 298.88253 * 6 5 3 8 8 C 1.53087 * 109.41489 * 61.16169 * 7 6 5 9 9 C 1.53178 * 109.52270 * 150.00099 * 3 2 1 10 10 H 1.08996 * 109.54868 * 182.88339 * 9 3 2 11 11 C 1.53000 * 109.54181 * 303.06097 * 9 3 2 12 12 C 1.50706 * 109.46962 * 184.82374 * 11 9 3 13 13 O 1.21277 * 120.00022 * 359.97438 * 12 11 9 14 14 N 1.34777 * 119.99914 * 179.97438 * 12 11 9 15 15 C 1.39121 * 120.00189 * 174.84418 * 14 12 11 16 16 C 1.38649 * 120.28396 * 339.26084 * 15 14 12 17 17 C 1.38221 * 120.03309 * 179.97438 * 16 15 14 18 18 C 1.38864 * 120.61821 * 0.02562 * 17 16 15 19 19 C 1.36460 * 120.57639 * 359.97438 * 18 17 16 20 20 C 1.40738 * 119.94504 * 359.97438 * 19 18 17 21 21 C 1.41073 * 120.30377 * 180.02562 * 20 19 18 22 22 H 1.07995 * 120.00108 * 148.05784 * 21 20 19 23 23 C 1.39959 * 119.99725 * 328.05915 * 21 20 19 24 24 N 1.30853 * 119.99966 * 345.12563 * 23 21 20 25 25 Si 1.86803 * 119.99657 * 165.12457 * 23 21 20 26 26 H 1.48493 * 109.46949 * 90.00219 * 25 23 21 27 27 H 1.48503 * 109.46851 * 210.00374 * 25 23 21 28 28 H 1.48495 * 109.47120 * 329.99709 * 25 23 21 29 29 H 1.09002 * 109.47017 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46901 * 299.99697 * 1 2 3 31 31 H 1.09001 * 109.47212 * 60.00049 * 1 2 3 32 32 H 1.08999 * 109.41439 * 177.63164 * 5 3 2 33 33 H 1.09000 * 109.47854 * 57.64323 * 5 3 2 34 34 H 1.08996 * 109.48377 * 301.17557 * 7 6 5 35 35 H 1.09002 * 109.48629 * 181.14756 * 7 6 5 36 36 H 1.09003 * 109.52472 * 182.48551 * 8 7 6 37 37 H 1.08997 * 109.52759 * 62.29477 * 8 7 6 38 38 H 1.08997 * 109.47443 * 64.82324 * 11 9 3 39 39 H 1.09000 * 109.47207 * 304.81694 * 11 9 3 40 40 H 0.97006 * 120.00098 * 354.84984 * 14 12 11 41 41 H 1.07995 * 119.98071 * 359.97438 * 16 15 14 42 42 H 1.08005 * 119.69485 * 179.97438 * 17 16 15 43 43 H 1.08000 * 119.71342 * 179.70411 * 18 17 16 44 44 H 1.08003 * 120.03317 * 179.97438 * 19 18 17 45 45 H 0.96997 * 119.99315 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 2.0013 0.5110 5 6 2.2261 1.7675 -1.4435 6 8 3.1454 0.8874 -2.0935 7 6 4.4399 0.8463 -1.4895 8 6 4.3134 0.3451 -0.0485 9 6 3.3606 1.2645 0.7218 10 1 3.7806 2.2692 0.7670 11 6 3.1663 0.7267 2.1410 12 6 4.4730 0.7979 2.8885 13 8 5.4623 1.2352 2.3400 14 7 4.5421 0.3756 4.1665 15 6 5.7686 0.3405 4.8222 16 6 6.9493 0.3143 4.0958 17 6 8.1650 0.2800 4.7526 18 6 8.2192 0.2709 6.1401 19 6 7.0727 0.2962 6.8798 20 6 5.8219 0.3324 6.2358 21 6 4.6319 0.3592 6.9931 22 1 3.7635 0.8789 6.6161 23 6 4.5768 -0.2877 8.2330 24 7 5.5039 -1.1503 8.5626 25 14 3.1797 0.0804 9.4171 26 1 2.0537 -0.8528 9.1595 27 1 3.6559 -0.0917 10.8132 28 1 2.7192 1.4783 9.2201 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.6303 2.7798 -1.4433 33 1 1.2745 1.7561 -1.9750 34 1 4.8731 1.8465 -1.4897 35 1 5.0833 0.1714 -2.0540 36 1 5.2937 0.3548 0.4280 37 1 3.9180 -0.6707 -0.0495 38 1 2.8305 -0.3092 2.0942 39 1 2.4187 1.3281 2.6582 40 1 3.7366 0.0959 4.6292 41 1 6.9190 0.3206 3.0163 42 1 9.0813 0.2593 4.1813 43 1 9.1770 0.2392 6.6382 44 1 7.1251 0.2884 7.9585 45 1 5.4658 -1.5983 9.4221 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581893940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:12 Heat of formation + Delta-G solvation = -128.449284 kcal Electronic energy + Delta-G solvation = -27219.836656 eV Core-core repulsion = 23394.202384 eV Total energy + Delta-G solvation = -3825.634272 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.54594 -40.55061 -38.93491 -37.89240 -35.57060 -35.47226 -35.02893 -31.55686 -31.45914 -30.92047 -29.21980 -27.39189 -27.06409 -24.86338 -24.33501 -23.30823 -22.36813 -21.01966 -20.77011 -19.22143 -18.31294 -17.88306 -17.50151 -17.31363 -16.91160 -16.66299 -16.42771 -16.21776 -15.89135 -15.80423 -15.16964 -14.87014 -14.69785 -14.46065 -14.34665 -13.97512 -13.82026 -13.53872 -13.31580 -13.20363 -13.08569 -12.88207 -12.75384 -12.50070 -12.19423 -12.16145 -12.02655 -11.93452 -11.67254 -11.51149 -11.26143 -11.06782 -10.98786 -10.95178 -10.31726 -9.99436 -9.28863 -8.77005 -8.47663 -6.29500 0.85295 1.06098 1.42287 1.51152 1.56298 1.91444 2.22955 2.45123 2.77045 2.79889 3.10623 3.65771 3.72213 3.73110 3.84501 3.92477 4.15821 4.33376 4.38534 4.47408 4.52949 4.53526 4.57229 4.57624 4.64448 4.67433 4.77428 4.78995 4.84188 4.92569 4.96955 5.06354 5.10205 5.20548 5.23652 5.28932 5.38102 5.48869 5.81268 5.83156 6.13438 6.16670 6.18673 6.27051 6.43568 6.66037 6.78441 6.97047 7.04613 7.44446 8.39741 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015392 B = 0.003470 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.646559 B = 8066.644696 C = 9604.354637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.392 6.392 3 C 0.062 3.938 4 H 0.095 0.905 5 C 0.037 3.963 6 O -0.393 6.393 7 C 0.065 3.935 8 C -0.147 4.147 9 C -0.065 4.065 10 H 0.086 0.914 11 C -0.118 4.118 12 C 0.495 3.505 13 O -0.563 6.563 14 N -0.639 5.639 15 C 0.020 3.980 16 C -0.120 4.120 17 C -0.223 4.223 18 C -0.125 4.125 19 C -0.168 4.168 20 C 0.072 3.928 21 C -0.498 4.498 22 H 0.083 0.917 23 C 0.040 3.960 24 N -0.832 5.832 25 Si 0.979 3.021 26 H -0.260 1.260 27 H -0.274 1.274 28 H -0.259 1.259 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.412 0.588 41 H 0.127 0.873 42 H 0.114 0.886 43 H 0.110 0.890 44 H 0.098 0.902 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.753 4.043 -13.248 18.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.311 6.311 3 C 0.003 3.997 4 H 0.112 0.888 5 C -0.040 4.040 6 O -0.312 6.312 7 C -0.012 4.012 8 C -0.184 4.184 9 C -0.084 4.084 10 H 0.104 0.896 11 C -0.158 4.158 12 C 0.285 3.715 13 O -0.444 6.444 14 N -0.281 5.281 15 C -0.075 4.075 16 C -0.140 4.140 17 C -0.243 4.243 18 C -0.144 4.144 19 C -0.188 4.188 20 C 0.069 3.931 21 C -0.528 4.528 22 H 0.101 0.899 23 C -0.175 4.175 24 N -0.458 5.458 25 Si 0.801 3.199 26 H -0.184 1.184 27 H -0.199 1.199 28 H -0.183 1.183 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.126 0.874 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.123 0.877 39 H 0.132 0.868 40 H 0.249 0.751 41 H 0.144 0.856 42 H 0.132 0.868 43 H 0.128 0.872 44 H 0.116 0.884 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.984 3.886 -13.648 17.945 hybrid contribution -0.501 0.039 1.410 1.497 sum -11.486 3.925 -12.238 17.236 Atomic orbital electron populations 1.22969 0.79998 1.03523 1.00820 1.87972 1.20815 1.27307 1.95055 1.22870 0.94428 0.86078 0.96278 0.88758 1.23230 0.94488 0.93327 0.92964 1.87899 1.22792 1.66267 1.54255 1.22589 0.84557 1.01080 0.92969 1.22174 1.00542 0.99472 0.96244 1.21014 0.94628 1.00269 0.92484 0.89569 1.21607 0.93579 1.05282 0.95283 1.21408 0.92019 0.76700 0.81388 1.90517 1.38930 1.46788 1.68146 1.43083 1.09188 1.62840 1.12999 1.18065 0.85451 1.12516 0.91482 1.21194 0.91625 1.01377 0.99847 1.20677 0.96821 1.12687 0.94090 1.20696 0.97608 1.01778 0.94269 1.20792 0.92167 1.07164 0.98658 1.17683 0.94422 0.91458 0.89584 1.19483 0.98442 1.31669 1.03228 0.89863 1.26660 0.99389 0.92111 0.99340 1.69884 1.34253 1.19343 1.22323 0.85240 0.77947 0.79863 0.76885 1.18441 1.19911 1.18284 0.89290 0.92862 0.93120 0.91037 0.87368 0.92640 0.88446 0.91128 0.92122 0.87678 0.86785 0.75112 0.85558 0.86830 0.87190 0.88383 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.82 113.37 1.23 1.54 16 2 O -0.39 -8.16 9.08 -141.91 -1.29 -9.45 16 3 C 0.06 1.13 2.44 30.69 0.07 1.20 16 4 H 0.09 1.26 7.79 -2.39 -0.02 1.25 16 5 C 0.04 0.65 6.48 72.02 0.47 1.11 16 6 O -0.39 -9.40 10.70 -141.91 -1.52 -10.92 16 7 C 0.06 1.50 6.84 72.01 0.49 1.99 16 8 C -0.15 -3.90 4.97 30.68 0.15 -3.75 16 9 C -0.07 -1.52 1.75 -10.67 -0.02 -1.54 16 10 H 0.09 2.10 7.96 -2.39 -0.02 2.08 16 11 C -0.12 -2.95 4.93 29.85 0.15 -2.80 16 12 C 0.49 17.62 7.41 87.66 0.65 18.27 16 13 O -0.56 -23.15 10.92 -3.02 -0.03 -23.18 16 14 N -0.64 -25.66 5.17 -302.28 -1.56 -27.22 16 15 C 0.02 0.98 6.52 38.88 0.25 1.23 16 16 C -0.12 -5.83 8.76 22.36 0.20 -5.64 16 17 C -0.22 -10.43 10.04 22.42 0.22 -10.21 16 18 C -0.12 -5.99 9.97 22.00 0.22 -5.77 16 19 C -0.17 -8.84 8.59 22.47 0.19 -8.65 16 20 C 0.07 3.80 5.50 -21.18 -0.12 3.68 16 21 C -0.50 -24.92 8.23 23.38 0.19 -24.73 16 22 H 0.08 3.86 7.30 -2.91 -0.02 3.84 16 23 C 0.04 1.90 5.15 85.26 0.44 2.34 16 24 N -0.83 -42.38 11.30 21.83 0.25 -42.13 16 25 Si 0.98 36.15 29.59 68.60 2.03 38.18 16 26 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 27 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 28 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 0.60 8.09 -2.39 -0.02 0.58 16 31 H 0.05 0.56 7.86 -2.39 -0.02 0.55 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.11 1.52 7.86 -2.39 -0.02 1.50 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.07 2.24 6.05 -2.39 -0.01 2.22 16 37 H 0.06 1.73 7.84 -2.39 -0.02 1.71 16 38 H 0.11 2.57 7.77 -2.39 -0.02 2.55 16 39 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.41 14.98 7.51 -92.70 -0.70 14.29 16 41 H 0.13 6.03 5.48 -2.91 -0.02 6.02 16 42 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 43 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 44 H 0.10 5.34 6.62 -2.91 -0.02 5.32 16 45 H 0.29 13.30 8.30 -92.71 -0.77 12.53 16 Total: -1.00 -64.37 359.70 2.98 -61.39 By element: Atomic # 1 Polarization: 44.74 SS G_CDS: 0.31 Total: 45.04 kcal Atomic # 6 Polarization: -36.51 SS G_CDS: 4.79 Total: -31.72 kcal Atomic # 7 Polarization: -68.03 SS G_CDS: -1.32 Total: -69.35 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -2.84 Total: -43.55 kcal Atomic # 14 Polarization: 36.15 SS G_CDS: 2.03 Total: 38.18 kcal Total: -64.37 2.98 -61.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581893940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.055 kcal (2) G-P(sol) polarization free energy of solvation -64.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds