Wall clock time and date at job start Tue Mar 31 2020 12:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99752 * 2 1 4 4 H 1.08999 * 109.52423 * 330.12997 * 3 2 1 5 5 C 1.53092 * 109.57269 * 90.28177 * 3 2 1 6 6 O 1.42909 * 109.41582 * 62.33053 * 5 3 2 7 7 C 1.42901 * 114.09848 * 61.15539 * 6 5 3 8 8 C 1.53101 * 109.41483 * 298.84669 * 7 6 5 9 9 C 1.53170 * 109.52391 * 210.00026 * 3 2 1 10 10 H 1.09006 * 109.54644 * 177.05917 * 9 3 2 11 11 C 1.53000 * 109.54654 * 56.87663 * 9 3 2 12 12 C 1.50700 * 109.47575 * 175.00054 * 11 9 3 13 13 O 1.21284 * 119.99936 * 0.02562 * 12 11 9 14 14 N 1.34777 * 119.99863 * 180.02562 * 12 11 9 15 15 C 1.39128 * 119.99695 * 174.42869 * 14 12 11 16 16 C 1.38645 * 120.28607 * 335.17292 * 15 14 12 17 17 C 1.38222 * 120.03366 * 179.97438 * 16 15 14 18 18 C 1.38865 * 120.61719 * 359.97438 * 17 16 15 19 19 C 1.36459 * 120.57520 * 0.02562 * 18 17 16 20 20 C 1.40741 * 119.94763 * 0.02562 * 19 18 17 21 21 C 1.41062 * 120.30372 * 180.02562 * 20 19 18 22 22 H 1.07999 * 120.00417 * 145.07459 * 21 20 19 23 23 C 1.39964 * 120.00144 * 325.07932 * 21 20 19 24 24 N 1.30850 * 119.99725 * 4.79661 * 23 21 20 25 25 Si 1.86802 * 120.00237 * 184.79623 * 23 21 20 26 26 H 1.48500 * 109.47013 * 59.99904 * 25 23 21 27 27 H 1.48502 * 109.47147 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47121 * 299.99945 * 25 23 21 29 29 H 1.09003 * 109.46777 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47603 * 299.99476 * 1 2 3 31 31 H 1.09004 * 109.47290 * 60.00018 * 1 2 3 32 32 H 1.09001 * 109.47935 * 182.30721 * 5 3 2 33 33 H 1.08995 * 109.48316 * 302.33442 * 5 3 2 34 34 H 1.08997 * 109.48201 * 58.82580 * 7 6 5 35 35 H 1.08993 * 109.48385 * 178.85518 * 7 6 5 36 36 H 1.09004 * 109.51904 * 297.70220 * 8 7 6 37 37 H 1.09003 * 109.52184 * 177.51343 * 8 7 6 38 38 H 1.09007 * 109.46398 * 55.00144 * 11 9 3 39 39 H 1.08998 * 109.47264 * 295.00866 * 11 9 3 40 40 H 0.96992 * 120.00170 * 354.42141 * 14 12 11 41 41 H 1.08000 * 119.98077 * 359.94575 * 16 15 14 42 42 H 1.08001 * 119.68867 * 179.97438 * 17 16 15 43 43 H 1.07997 * 119.70821 * 180.28641 * 18 17 16 44 44 H 1.08008 * 120.02878 * 179.97438 * 19 18 17 45 45 H 0.97003 * 120.00228 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3445 2.0006 -0.5116 5 6 2.2252 1.7711 1.4424 6 8 3.1435 0.8910 2.0938 7 6 4.4383 0.8480 1.4906 8 6 4.3121 0.3453 0.0500 9 6 3.3605 1.2647 -0.7218 10 1 3.7799 2.2698 -0.7679 11 6 3.1665 0.7255 -2.1404 12 6 4.4720 0.8007 -2.8894 13 8 5.4605 1.2417 -2.3423 14 7 4.5411 0.3779 -4.1673 15 6 5.7134 0.5535 -4.8957 16 6 6.6020 1.5627 -4.5577 17 6 7.7654 1.7322 -5.2846 18 6 8.0578 0.8985 -6.3560 19 6 7.2010 -0.1027 -6.7103 20 6 6.0090 -0.2961 -5.9874 21 6 5.1182 -1.3291 -6.3469 22 1 4.5629 -1.8535 -5.5833 23 6 4.9539 -1.6746 -7.6933 24 7 5.6943 -1.1054 -8.6098 25 14 3.6778 -2.9484 -8.1817 26 1 2.3304 -2.4849 -7.7634 27 1 3.7017 -3.1333 -9.6550 28 1 3.9863 -4.2390 -7.5153 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.6304 2.7830 1.4412 33 1 1.2734 1.7614 1.9733 34 1 4.8723 1.8478 1.4899 35 1 5.0806 0.1732 2.0562 36 1 3.9158 -0.6701 0.0520 37 1 5.2927 0.3537 -0.4260 38 1 2.4162 1.3240 -2.6571 39 1 2.8342 -0.3115 -2.0927 40 1 3.7736 -0.0489 -4.5791 41 1 6.3848 2.2170 -3.7264 42 1 8.4535 2.5204 -5.0167 43 1 8.9732 1.0411 -6.9109 44 1 7.4369 -0.7457 -7.5454 45 1 5.5802 -1.3445 -9.5429 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581893941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:18 Heat of formation + Delta-G solvation = -111.510316 kcal Electronic energy + Delta-G solvation = -27236.137321 eV Core-core repulsion = 23411.237578 eV Total energy + Delta-G solvation = -3824.899743 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.31049 -39.27536 -37.23203 -37.06741 -34.22320 -33.68416 -33.58083 -30.58786 -29.67901 -29.42093 -27.78433 -26.74459 -25.24764 -23.72220 -23.40757 -21.53123 -20.71132 -19.94627 -19.25390 -17.42046 -16.86976 -16.64779 -16.52210 -16.16998 -15.72484 -15.49347 -15.13458 -14.96458 -14.69736 -14.21089 -14.03346 -13.80605 -13.26860 -12.92028 -12.86684 -12.62739 -12.49674 -12.31547 -12.15878 -11.82698 -11.48362 -11.46207 -11.28906 -11.17285 -11.01358 -10.93156 -10.74771 -10.48045 -10.34959 -10.12693 -10.05492 -9.76325 -9.38419 -9.24830 -9.19766 -8.67745 -7.30188 -6.90058 -6.60674 -4.43993 2.59713 2.88074 3.03658 3.05184 3.19116 3.48613 3.52363 3.87682 3.90726 3.93214 4.57261 4.65078 4.67098 4.81360 4.87665 5.07251 5.15611 5.22458 5.27528 5.35858 5.37568 5.51019 5.52183 5.54086 5.62643 5.65307 5.81628 5.97414 6.03046 6.25922 6.33280 6.45896 6.55420 6.58767 6.92663 6.96309 7.07838 7.18853 7.22747 7.29631 7.67771 7.72016 8.00416 8.09698 8.12621 8.44712 8.58536 8.83775 8.86017 9.03914 10.23176 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014622 B = 0.003569 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.468515 B = 7843.306456 C = 9376.538696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.367 6.367 3 C 0.057 3.943 4 H 0.069 0.931 5 C 0.043 3.957 6 O -0.376 6.376 7 C 0.062 3.938 8 C -0.151 4.151 9 C -0.065 4.065 10 H 0.090 0.910 11 C -0.131 4.131 12 C 0.497 3.503 13 O -0.539 6.539 14 N -0.638 5.638 15 C 0.029 3.971 16 C -0.104 4.104 17 C -0.213 4.213 18 C -0.124 4.124 19 C -0.138 4.138 20 C 0.092 3.908 21 C -0.473 4.473 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.809 5.809 25 Si 0.913 3.087 26 H -0.267 1.267 27 H -0.279 1.279 28 H -0.266 1.266 29 H 0.085 0.915 30 H 0.038 0.962 31 H 0.040 0.960 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.405 0.595 41 H 0.117 0.883 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.131 0.869 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.960 3.528 12.609 16.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.285 6.285 3 C -0.002 4.002 4 H 0.087 0.913 5 C -0.034 4.034 6 O -0.295 6.295 7 C -0.015 4.015 8 C -0.189 4.189 9 C -0.084 4.084 10 H 0.108 0.892 11 C -0.171 4.171 12 C 0.284 3.716 13 O -0.418 6.418 14 N -0.279 5.279 15 C -0.065 4.065 16 C -0.125 4.125 17 C -0.233 4.233 18 C -0.143 4.143 19 C -0.158 4.158 20 C 0.088 3.912 21 C -0.504 4.504 22 H 0.091 0.909 23 C -0.141 4.141 24 N -0.436 5.436 25 Si 0.738 3.262 26 H -0.191 1.191 27 H -0.204 1.204 28 H -0.191 1.191 29 H 0.103 0.897 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.117 0.883 40 H 0.240 0.760 41 H 0.134 0.866 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.149 0.851 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.208 3.560 12.905 16.248 hybrid contribution -1.186 -0.367 -0.953 1.565 sum -10.394 3.193 11.952 16.158 Atomic orbital electron populations 1.22799 0.81620 1.02779 0.99587 1.88006 1.18959 1.26691 1.94883 1.22894 0.95414 0.85718 0.96129 0.91327 1.23004 0.94161 0.93136 0.93134 1.87924 1.22479 1.65416 1.53655 1.22622 0.84263 1.00619 0.93965 1.22290 1.01783 0.99691 0.95104 1.21009 0.93316 1.00972 0.93064 0.89223 1.21615 0.96002 1.04284 0.95245 1.20559 0.90403 0.78880 0.81728 1.90576 1.37290 1.46454 1.67529 1.43016 1.15354 1.58092 1.11438 1.17933 0.89458 0.99095 1.00017 1.20763 0.94839 0.97068 0.99780 1.20388 0.99212 1.03435 1.00295 1.20540 0.98891 0.97500 0.97337 1.21187 0.93143 0.99508 1.02010 1.17412 0.91933 0.91126 0.90707 1.19233 1.22435 1.16322 0.92371 0.90856 1.25831 0.96170 0.95659 0.96485 1.69753 1.34454 1.37099 1.02262 0.86298 0.81037 0.81001 0.77910 1.19136 1.20392 1.19063 0.89657 0.94373 0.94125 0.92394 0.89148 0.93322 0.88962 0.90862 0.88524 0.89499 0.88334 0.75995 0.86573 0.89233 0.89382 0.85141 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.33 16 2 O -0.37 -4.27 9.08 -42.59 -0.39 -4.66 16 3 C 0.06 0.60 2.43 -26.60 -0.06 0.53 16 4 H 0.07 0.59 7.79 -51.93 -0.40 0.19 16 5 C 0.04 0.44 6.49 37.21 0.24 0.68 16 6 O -0.38 -4.83 10.70 -42.59 -0.46 -5.28 16 7 C 0.06 0.75 6.84 37.21 0.25 1.00 16 8 C -0.15 -2.06 4.97 -26.59 -0.13 -2.20 16 9 C -0.06 -0.81 1.75 -90.44 -0.16 -0.97 16 10 H 0.09 1.15 7.95 -51.93 -0.41 0.74 16 11 C -0.13 -1.76 4.93 -27.88 -0.14 -1.89 16 12 C 0.50 8.97 7.37 -10.99 -0.08 8.89 16 13 O -0.54 -11.11 11.17 5.55 0.06 -11.05 16 14 N -0.64 -12.78 5.12 -9.47 -0.05 -12.83 16 15 C 0.03 0.69 6.46 -83.17 -0.54 0.16 16 16 C -0.10 -2.49 8.71 -39.44 -0.34 -2.83 16 17 C -0.21 -4.97 10.04 -39.36 -0.39 -5.36 16 18 C -0.12 -2.94 9.97 -39.99 -0.40 -3.34 16 19 C -0.14 -3.57 8.62 -39.28 -0.34 -3.91 16 20 C 0.09 2.37 5.56 -106.65 -0.59 1.77 16 21 C -0.47 -11.81 8.18 -37.87 -0.31 -12.12 16 22 H 0.07 1.74 7.46 -52.49 -0.39 1.35 16 23 C 0.07 1.79 5.42 -17.32 -0.09 1.69 16 24 N -0.81 -20.31 10.60 55.55 0.59 -19.72 16 25 Si 0.91 18.06 29.56 -169.99 -5.03 13.04 16 26 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 27 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 28 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.27 7.86 -51.93 -0.41 -0.14 16 31 H 0.04 0.30 8.09 -51.93 -0.42 -0.12 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.78 7.86 -51.93 -0.41 0.37 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.06 7.83 -51.93 -0.41 0.66 16 37 H 0.10 1.54 6.07 -51.93 -0.32 1.22 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.10 1.29 7.78 -51.93 -0.40 0.89 16 40 H 0.40 7.39 7.72 -40.82 -0.31 7.08 16 41 H 0.12 2.71 5.79 -52.49 -0.30 2.41 16 42 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 43 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 44 H 0.13 3.47 6.13 -52.48 -0.32 3.15 16 45 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 LS Contribution 359.55 15.07 5.42 5.42 Total: -1.00 -29.46 359.55 -8.45 -37.91 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -6.61 Total: 13.74 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -1.99 Total: -16.56 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.54 Total: -32.55 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.78 Total: -20.99 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.46 -8.45 -37.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581893941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.604 kcal (2) G-P(sol) polarization free energy of solvation -29.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds