Wall clock time and date at job start Tue Mar 31 2020 12:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99752 * 2 1 4 4 H 1.08999 * 109.52423 * 330.12997 * 3 2 1 5 5 C 1.53092 * 109.57269 * 90.28177 * 3 2 1 6 6 O 1.42909 * 109.41582 * 62.33053 * 5 3 2 7 7 C 1.42901 * 114.09848 * 61.15539 * 6 5 3 8 8 C 1.53101 * 109.41483 * 298.84669 * 7 6 5 9 9 C 1.53170 * 109.52391 * 210.00026 * 3 2 1 10 10 H 1.09006 * 109.54644 * 177.05917 * 9 3 2 11 11 C 1.53000 * 109.54654 * 56.87663 * 9 3 2 12 12 C 1.50700 * 109.47575 * 175.00054 * 11 9 3 13 13 O 1.21284 * 119.99936 * 0.02562 * 12 11 9 14 14 N 1.34777 * 119.99863 * 180.02562 * 12 11 9 15 15 C 1.39128 * 119.99695 * 174.42869 * 14 12 11 16 16 C 1.38645 * 120.28607 * 335.17292 * 15 14 12 17 17 C 1.38222 * 120.03366 * 179.97438 * 16 15 14 18 18 C 1.38865 * 120.61719 * 359.97438 * 17 16 15 19 19 C 1.36459 * 120.57520 * 0.02562 * 18 17 16 20 20 C 1.40741 * 119.94763 * 0.02562 * 19 18 17 21 21 C 1.41062 * 120.30372 * 180.02562 * 20 19 18 22 22 H 1.07999 * 120.00417 * 145.07459 * 21 20 19 23 23 C 1.39964 * 120.00144 * 325.07932 * 21 20 19 24 24 N 1.30850 * 119.99725 * 4.79661 * 23 21 20 25 25 Si 1.86802 * 120.00237 * 184.79623 * 23 21 20 26 26 H 1.48500 * 109.47013 * 59.99904 * 25 23 21 27 27 H 1.48502 * 109.47147 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47121 * 299.99945 * 25 23 21 29 29 H 1.09003 * 109.46777 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47603 * 299.99476 * 1 2 3 31 31 H 1.09004 * 109.47290 * 60.00018 * 1 2 3 32 32 H 1.09001 * 109.47935 * 182.30721 * 5 3 2 33 33 H 1.08995 * 109.48316 * 302.33442 * 5 3 2 34 34 H 1.08997 * 109.48201 * 58.82580 * 7 6 5 35 35 H 1.08993 * 109.48385 * 178.85518 * 7 6 5 36 36 H 1.09004 * 109.51904 * 297.70220 * 8 7 6 37 37 H 1.09003 * 109.52184 * 177.51343 * 8 7 6 38 38 H 1.09007 * 109.46398 * 55.00144 * 11 9 3 39 39 H 1.08998 * 109.47264 * 295.00866 * 11 9 3 40 40 H 0.96992 * 120.00170 * 354.42141 * 14 12 11 41 41 H 1.08000 * 119.98077 * 359.94575 * 16 15 14 42 42 H 1.08001 * 119.68867 * 179.97438 * 17 16 15 43 43 H 1.07997 * 119.70821 * 180.28641 * 18 17 16 44 44 H 1.08008 * 120.02878 * 179.97438 * 19 18 17 45 45 H 0.97003 * 120.00228 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3445 2.0006 -0.5116 5 6 2.2252 1.7711 1.4424 6 8 3.1435 0.8910 2.0938 7 6 4.4383 0.8480 1.4906 8 6 4.3121 0.3453 0.0500 9 6 3.3605 1.2647 -0.7218 10 1 3.7799 2.2698 -0.7679 11 6 3.1665 0.7255 -2.1404 12 6 4.4720 0.8007 -2.8894 13 8 5.4605 1.2417 -2.3423 14 7 4.5411 0.3779 -4.1673 15 6 5.7134 0.5535 -4.8957 16 6 6.6020 1.5627 -4.5577 17 6 7.7654 1.7322 -5.2846 18 6 8.0578 0.8985 -6.3560 19 6 7.2010 -0.1027 -6.7103 20 6 6.0090 -0.2961 -5.9874 21 6 5.1182 -1.3291 -6.3469 22 1 4.5629 -1.8535 -5.5833 23 6 4.9539 -1.6746 -7.6933 24 7 5.6943 -1.1054 -8.6098 25 14 3.6778 -2.9484 -8.1817 26 1 2.3304 -2.4849 -7.7634 27 1 3.7017 -3.1333 -9.6550 28 1 3.9863 -4.2390 -7.5153 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.6304 2.7830 1.4412 33 1 1.2734 1.7614 1.9733 34 1 4.8723 1.8478 1.4899 35 1 5.0806 0.1732 2.0562 36 1 3.9158 -0.6701 0.0520 37 1 5.2927 0.3537 -0.4260 38 1 2.4162 1.3240 -2.6571 39 1 2.8342 -0.3115 -2.0927 40 1 3.7736 -0.0489 -4.5791 41 1 6.3848 2.2170 -3.7264 42 1 8.4535 2.5204 -5.0167 43 1 8.9732 1.0411 -6.9109 44 1 7.4369 -0.7457 -7.5454 45 1 5.5802 -1.3445 -9.5429 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581893941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:16 Heat of formation + Delta-G solvation = -128.857596 kcal Electronic energy + Delta-G solvation = -27236.889555 eV Core-core repulsion = 23411.237578 eV Total energy + Delta-G solvation = -3825.651978 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.52912 -40.54761 -38.94030 -37.89455 -35.57575 -35.44724 -35.02891 -31.54128 -31.42541 -30.89848 -29.23613 -27.39318 -27.07370 -24.86551 -24.34230 -23.23463 -22.38411 -21.02950 -20.73842 -19.22814 -18.29418 -17.88852 -17.49908 -17.30561 -16.98327 -16.60885 -16.42572 -16.03569 -16.00978 -15.82379 -15.16665 -14.82042 -14.77239 -14.46436 -14.22433 -14.06532 -13.82935 -13.60149 -13.31981 -13.09814 -12.99979 -12.82051 -12.77370 -12.51619 -12.19629 -12.13722 -12.06195 -11.87523 -11.63037 -11.56651 -11.27290 -11.09071 -10.99321 -10.97121 -10.38179 -9.99491 -9.21668 -8.71987 -8.41738 -6.34189 0.84798 1.08591 1.42567 1.52557 1.54654 1.90648 2.24364 2.45593 2.76838 2.82830 3.10327 3.65371 3.71798 3.72365 3.83868 3.92542 4.15997 4.32792 4.38212 4.47280 4.52650 4.53437 4.57061 4.57661 4.66018 4.67346 4.75374 4.79372 4.84324 4.92390 4.96844 5.07137 5.11320 5.20078 5.24458 5.34369 5.38620 5.49086 5.81851 5.88542 6.15781 6.17082 6.20646 6.27886 6.43487 6.67888 6.79972 6.99295 7.05175 7.44648 8.43786 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014622 B = 0.003569 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.468515 B = 7843.306456 C = 9376.538696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.393 6.393 3 C 0.062 3.938 4 H 0.095 0.905 5 C 0.036 3.964 6 O -0.393 6.393 7 C 0.065 3.935 8 C -0.147 4.147 9 C -0.065 4.065 10 H 0.087 0.913 11 C -0.118 4.118 12 C 0.496 3.504 13 O -0.565 6.565 14 N -0.641 5.641 15 C 0.027 3.973 16 C -0.118 4.118 17 C -0.216 4.216 18 C -0.130 4.130 19 C -0.164 4.164 20 C 0.062 3.938 21 C -0.493 4.493 22 H 0.079 0.921 23 C 0.033 3.967 24 N -0.840 5.840 25 Si 0.985 3.015 26 H -0.254 1.254 27 H -0.275 1.275 28 H -0.264 1.264 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.116 0.884 39 H 0.104 0.896 40 H 0.412 0.588 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.110 0.890 44 H 0.115 0.885 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.243 3.889 13.442 18.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.312 6.312 3 C 0.003 3.997 4 H 0.113 0.887 5 C -0.040 4.040 6 O -0.312 6.312 7 C -0.012 4.012 8 C -0.184 4.184 9 C -0.084 4.084 10 H 0.105 0.895 11 C -0.158 4.158 12 C 0.286 3.714 13 O -0.445 6.445 14 N -0.283 5.283 15 C -0.068 4.068 16 C -0.138 4.138 17 C -0.236 4.236 18 C -0.149 4.149 19 C -0.184 4.184 20 C 0.058 3.942 21 C -0.524 4.524 22 H 0.097 0.903 23 C -0.180 4.180 24 N -0.467 5.467 25 Si 0.806 3.194 26 H -0.178 1.178 27 H -0.200 1.200 28 H -0.189 1.189 29 H 0.107 0.893 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.126 0.874 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.134 0.866 39 H 0.123 0.877 40 H 0.249 0.751 41 H 0.138 0.862 42 H 0.133 0.867 43 H 0.128 0.872 44 H 0.133 0.867 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.510 3.933 13.760 18.365 hybrid contribution -0.439 -0.435 -1.151 1.306 sum -11.949 3.498 12.609 17.720 Atomic orbital electron populations 1.22970 0.79987 1.03523 1.00829 1.87975 1.20828 1.27318 1.95052 1.22865 0.94425 0.86073 0.96289 0.88722 1.23240 0.94505 0.93337 0.92952 1.87899 1.22803 1.66307 1.54216 1.22582 0.84560 1.01069 0.92944 1.22169 1.00485 0.99502 0.96278 1.21015 0.94603 1.00254 0.92481 0.89465 1.21610 0.93556 1.05319 0.95297 1.21419 0.91800 0.77268 0.80933 1.90562 1.38820 1.47248 1.67852 1.43090 1.14447 1.58716 1.12091 1.18096 0.90653 0.98412 0.99677 1.20956 0.95372 0.97373 1.00136 1.20710 0.99457 1.03698 0.99705 1.20765 0.99414 0.97010 0.97694 1.21204 0.94196 1.00575 1.02426 1.17755 0.92428 0.92267 0.91755 1.19458 1.22901 1.16794 0.93265 0.90303 1.26705 0.97920 0.97352 0.96010 1.69846 1.35817 1.38330 1.02742 0.85203 0.78641 0.78047 0.77528 1.17814 1.19967 1.18902 0.89307 0.93111 0.92838 0.90965 0.87353 0.92592 0.88530 0.92168 0.91342 0.86637 0.87749 0.75121 0.86238 0.86711 0.87200 0.86731 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.82 113.37 1.23 1.54 16 2 O -0.39 -8.17 9.08 -141.94 -1.29 -9.46 16 3 C 0.06 1.12 2.43 30.68 0.07 1.20 16 4 H 0.09 1.25 7.79 -2.39 -0.02 1.23 16 5 C 0.04 0.64 6.49 72.01 0.47 1.11 16 6 O -0.39 -9.44 10.70 -141.94 -1.52 -10.96 16 7 C 0.06 1.52 6.84 72.02 0.49 2.02 16 8 C -0.15 -3.96 4.97 30.69 0.15 -3.81 16 9 C -0.06 -1.51 1.75 -10.68 -0.02 -1.53 16 10 H 0.09 2.10 7.95 -2.38 -0.02 2.08 16 11 C -0.12 -2.94 4.93 29.85 0.15 -2.79 16 12 C 0.50 17.63 7.37 87.66 0.65 18.28 16 13 O -0.56 -23.31 11.17 -3.04 -0.03 -23.34 16 14 N -0.64 -25.60 5.12 -302.28 -1.55 -27.15 16 15 C 0.03 1.29 6.46 38.88 0.25 1.54 16 16 C -0.12 -5.66 8.71 22.36 0.19 -5.47 16 17 C -0.22 -10.01 10.04 22.42 0.22 -9.78 16 18 C -0.13 -6.24 9.97 22.00 0.22 -6.02 16 19 C -0.16 -8.70 8.62 22.47 0.19 -8.50 16 20 C 0.06 3.25 5.56 -21.18 -0.12 3.13 16 21 C -0.49 -25.00 8.18 23.38 0.19 -24.80 16 22 H 0.08 3.76 7.46 -2.91 -0.02 3.74 16 23 C 0.03 1.59 5.42 85.26 0.46 2.05 16 24 N -0.84 -42.92 10.60 21.83 0.23 -42.69 16 25 Si 0.98 36.60 29.56 68.60 2.03 38.63 16 26 H -0.25 -8.88 7.11 99.48 0.71 -8.18 16 27 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 28 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 0.56 7.86 -2.39 -0.02 0.54 16 31 H 0.05 0.59 8.09 -2.38 -0.02 0.57 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.11 1.51 7.86 -2.39 -0.02 1.49 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.06 1.75 7.83 -2.38 -0.02 1.73 16 37 H 0.07 2.23 6.07 -2.39 -0.01 2.22 16 38 H 0.12 2.26 8.14 -2.38 -0.02 2.24 16 39 H 0.10 2.55 7.78 -2.39 -0.02 2.53 16 40 H 0.41 14.88 7.72 -92.71 -0.72 14.17 16 41 H 0.12 5.59 5.79 -2.91 -0.02 5.58 16 42 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 43 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 44 H 0.11 6.35 6.13 -2.91 -0.02 6.34 16 45 H 0.28 13.30 8.30 -92.71 -0.77 12.53 16 Total: -1.00 -64.56 359.55 2.97 -61.59 By element: Atomic # 1 Polarization: 44.94 SS G_CDS: 0.29 Total: 45.23 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 4.81 Total: -31.85 kcal Atomic # 7 Polarization: -68.53 SS G_CDS: -1.32 Total: -69.84 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -2.84 Total: -43.76 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 2.03 Total: 38.63 kcal Total: -64.56 2.97 -61.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581893941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.271 kcal (2) G-P(sol) polarization free energy of solvation -64.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds