Wall clock time and date at job start Tue Mar 31 2020 12:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34711 * 116.99819 * 2 1 4 4 O 1.21467 * 120.00258 * 0.02562 * 3 2 1 5 5 C 1.47726 * 119.99539 * 179.97438 * 3 2 1 6 6 C 1.39653 * 120.15327 * 359.97438 * 5 3 2 7 7 C 1.37921 * 119.85039 * 180.02562 * 6 5 3 8 8 C 1.38393 * 120.14963 * 359.73518 * 7 6 5 9 9 C 1.38345 * 120.29946 * 0.54036 * 8 7 6 10 10 C 1.50706 * 119.92510 * 179.72347 * 9 8 7 11 11 N 1.46497 * 109.47174 * 269.73157 * 10 9 8 12 12 C 1.34777 * 119.99525 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00463 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99675 * 179.72583 * 12 11 10 15 15 C 1.53004 * 109.47208 * 180.27843 * 14 12 11 16 16 C 1.52997 * 109.47000 * 179.97438 * 15 14 12 17 17 C 1.53011 * 109.46712 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.46921 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99765 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00083 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00147 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00278 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47002 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47093 * 119.99802 * 22 20 18 25 25 H 1.48490 * 109.47068 * 240.00064 * 22 20 18 26 26 C 1.37966 * 120.15262 * 359.45617 * 9 8 7 27 27 H 1.08999 * 109.47183 * 59.99301 * 1 2 3 28 28 H 1.08998 * 109.47135 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46654 * 299.99455 * 1 2 3 30 30 H 1.08006 * 120.07274 * 0.02562 * 6 5 3 31 31 H 1.07998 * 119.92479 * 180.02562 * 7 6 5 32 32 H 1.07995 * 119.84978 * 180.26665 * 8 7 6 33 33 H 1.08995 * 109.46956 * 149.72861 * 10 9 8 34 34 H 1.09001 * 109.46317 * 29.73307 * 10 9 8 35 35 H 0.97000 * 120.00580 * 0.02562 * 11 10 9 36 36 H 1.09009 * 109.47352 * 300.27556 * 14 12 11 37 37 H 1.08998 * 109.47585 * 60.27844 * 14 12 11 38 38 H 1.09000 * 109.46887 * 300.00372 * 15 14 12 39 39 H 1.08998 * 109.46846 * 59.99549 * 15 14 12 40 40 H 1.08995 * 109.47672 * 299.99669 * 16 15 14 41 41 H 1.09001 * 109.47109 * 60.00906 * 16 15 14 42 42 H 1.09003 * 109.46627 * 299.99937 * 17 16 15 43 43 H 1.08992 * 109.47177 * 60.00618 * 17 16 15 44 44 H 0.96999 * 120.00235 * 180.02562 * 21 20 18 45 45 H 1.08007 * 120.07693 * 180.24607 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5388 1.2775 0.0006 6 6 4.3025 0.1083 0.0017 7 6 5.6794 0.1877 0.0027 8 6 6.3045 1.4224 -0.0028 9 6 5.5541 2.5847 0.0018 10 6 6.2435 3.9248 0.0020 11 7 6.4658 4.3594 1.3833 12 6 7.0722 5.5375 1.6296 13 8 7.4336 6.2381 0.7079 14 6 7.2953 5.9875 3.0505 15 6 7.9908 7.3503 3.0506 16 6 8.2167 7.8074 4.4932 17 6 8.9128 9.1700 4.4932 18 6 9.1358 9.6200 5.9141 19 1 8.8137 8.9963 6.7349 20 6 9.7520 10.8273 6.1662 21 7 10.1456 11.5861 5.1667 22 14 10.0279 11.3855 7.9274 23 1 9.4984 10.3590 8.8606 24 1 11.4820 11.5683 8.1667 25 1 9.3231 12.6726 8.1548 26 6 4.1759 2.5198 0.0007 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 3.8159 -0.8559 0.0017 31 1 6.2712 -0.7157 0.0031 32 1 7.3830 1.4789 -0.0063 33 1 5.6189 4.6548 -0.5126 34 1 7.2016 3.8404 -0.5110 35 1 6.1771 3.7990 2.1205 36 1 6.3354 6.0694 3.5607 37 1 7.9209 5.2603 3.5680 38 1 8.9506 7.2685 2.5405 39 1 7.3652 8.0775 2.5331 40 1 7.2568 7.8895 5.0029 41 1 8.8422 7.0803 5.0110 42 1 9.8728 9.0875 3.9836 43 1 8.2877 9.8974 3.9754 44 1 10.5794 12.4353 5.3440 45 1 3.5913 3.4279 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588161516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:11 Heat of formation + Delta-G solvation = -123.275689 kcal Electronic energy + Delta-G solvation = -24591.654622 eV Core-core repulsion = 20766.244693 eV Total energy + Delta-G solvation = -3825.409928 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.09531 -39.97402 -39.16694 -36.91151 -35.37284 -34.74452 -32.65217 -32.15650 -31.75404 -29.74042 -28.32922 -26.84582 -25.16746 -24.62333 -22.57239 -22.07264 -21.15150 -20.31277 -19.94232 -18.31490 -17.65914 -16.85039 -16.75759 -16.60356 -16.24379 -16.02096 -15.92968 -15.42831 -14.85318 -14.42414 -14.19178 -14.08593 -14.00986 -13.72095 -13.40868 -12.96999 -12.93248 -12.64830 -12.58863 -12.21709 -12.02506 -11.70467 -11.64188 -11.54003 -11.31651 -11.02917 -10.97642 -10.51330 -10.46764 -10.38701 -9.98949 -9.62988 -9.58914 -9.44971 -9.22040 -9.17175 -8.94143 -8.28722 -5.93303 -3.95706 0.12365 0.67679 1.99560 2.13965 2.72507 2.99664 3.34574 3.41450 3.42266 3.45813 4.06169 4.14639 4.27237 4.50729 4.52610 4.60818 4.68051 4.69887 4.75447 4.88555 4.97571 5.10651 5.22787 5.33517 5.37053 5.40536 5.42523 5.47732 5.67727 5.70079 5.83384 5.88966 5.95796 6.16850 6.20772 6.25690 6.33583 6.57638 6.86998 7.04950 7.21827 7.22704 7.40984 7.76782 7.92768 8.08379 8.24955 8.50266 9.12288 9.67944 11.18026 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.022223 B = 0.001657 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.637668 B =16892.303790 C =17470.816332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.508 3.492 4 O -0.501 6.501 5 C -0.130 4.130 6 C -0.056 4.056 7 C -0.133 4.133 8 C -0.063 4.063 9 C -0.116 4.116 10 C 0.160 3.840 11 N -0.736 5.736 12 C 0.513 3.487 13 O -0.534 6.534 14 C -0.138 4.138 15 C -0.103 4.103 16 C -0.110 4.110 17 C 0.019 3.981 18 C -0.520 4.520 19 H 0.055 0.945 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.035 4.035 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.401 0.599 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.259 0.741 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.738 -30.774 -12.837 36.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.353 3.647 4 O -0.390 6.390 5 C -0.131 4.131 6 C -0.074 4.074 7 C -0.151 4.151 8 C -0.081 4.081 9 C -0.117 4.117 10 C 0.037 3.963 11 N -0.390 5.390 12 C 0.300 3.700 13 O -0.409 6.409 14 C -0.178 4.178 15 C -0.141 4.141 16 C -0.148 4.148 17 C -0.018 4.018 18 C -0.558 4.558 19 H 0.073 0.927 20 C -0.146 4.146 21 N -0.534 5.534 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.054 4.054 27 H 0.083 0.917 28 H 0.122 0.878 29 H 0.084 0.916 30 H 0.157 0.843 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.235 0.765 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.623 -29.781 -13.559 36.261 hybrid contribution -0.242 0.064 1.259 1.283 sum -15.865 -29.717 -12.301 35.862 Atomic orbital electron populations 1.23323 0.75578 1.03948 1.02878 1.86526 1.23871 1.32535 1.84333 1.21204 0.89122 0.81563 0.72843 1.90870 1.66743 1.35990 1.45396 1.19070 0.89049 0.94957 1.10003 1.21535 0.94014 0.97955 0.93933 1.21207 0.94305 0.98191 1.01401 1.21476 1.00722 0.91719 0.94198 1.19876 0.93066 0.95458 1.03261 1.20145 1.00293 0.91239 0.84630 1.46168 1.62760 1.22274 1.07835 1.21139 0.76255 0.79981 0.92594 1.90717 1.49804 1.53716 1.46707 1.21799 1.03210 1.00704 0.92102 1.21456 1.00403 0.93121 0.99170 1.21652 1.00076 1.00031 0.93053 1.19109 0.95520 0.90397 0.96797 1.21329 1.38078 1.03712 0.92680 0.92700 1.25042 0.95823 0.96805 0.96922 1.69986 1.40802 1.12159 1.30499 0.86557 0.77780 0.78570 0.85206 1.19800 1.21069 1.21062 1.21247 0.93935 0.97062 0.93142 0.91671 0.87789 0.91614 0.84276 0.84665 0.84794 0.90366 0.90256 0.76505 0.89090 0.89111 0.91789 0.91790 0.93472 0.93485 0.96569 0.96563 0.93123 0.84132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 10.56 101.05 1.07 1.24 16 2 O -0.36 -2.64 9.82 -40.52 -0.40 -3.04 16 3 C 0.51 4.69 7.90 34.61 0.27 4.96 16 4 O -0.50 -6.02 16.14 -19.24 -0.31 -6.33 16 5 C -0.13 -1.01 5.87 -104.98 -0.62 -1.63 16 6 C -0.06 -0.32 9.62 -39.17 -0.38 -0.70 16 7 C -0.13 -0.64 10.03 -39.64 -0.40 -1.04 16 8 C -0.06 -0.35 9.69 -39.48 -0.38 -0.73 16 9 C -0.12 -0.82 5.24 -104.68 -0.55 -1.37 16 10 C 0.16 1.40 5.80 -5.19 -0.03 1.37 16 11 N -0.74 -7.09 5.55 -61.47 -0.34 -7.44 16 12 C 0.51 6.98 7.83 -10.98 -0.09 6.89 16 13 O -0.53 -9.59 15.98 5.55 0.09 -9.50 16 14 C -0.14 -1.82 5.70 -27.88 -0.16 -1.98 16 15 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 16 C -0.11 -2.30 5.15 -26.73 -0.14 -2.43 16 17 C 0.02 0.50 4.97 -27.88 -0.14 0.37 16 18 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 19 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 20 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -27.68 13.29 55.43 0.74 -26.95 16 22 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 26 C -0.04 -0.28 9.24 -39.17 -0.36 -0.64 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.14 0.58 7.61 -52.48 -0.40 0.18 16 31 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 32 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 35 H 0.40 2.90 8.46 -40.82 -0.35 2.55 16 36 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 39 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.14 1.22 7.65 -52.48 -0.40 0.81 16 LS Contribution 389.84 15.07 5.87 5.87 Total: -1.00 -36.33 389.84 -8.82 -45.14 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -7.02 Total: -3.22 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -2.43 Total: -11.57 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.40 Total: -34.38 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.62 Total: -18.87 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.33 -8.82 -45.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588161516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.134 kcal (2) G-P(sol) polarization free energy of solvation -36.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds