Wall clock time and date at job start Tue Mar 31 2020 12:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34711 * 116.99819 * 2 1 4 4 O 1.21467 * 120.00258 * 0.02562 * 3 2 1 5 5 C 1.47726 * 119.99539 * 179.97438 * 3 2 1 6 6 C 1.39653 * 120.15327 * 359.97438 * 5 3 2 7 7 C 1.37921 * 119.85039 * 180.02562 * 6 5 3 8 8 C 1.38393 * 120.14963 * 359.73518 * 7 6 5 9 9 C 1.38345 * 120.29946 * 0.54036 * 8 7 6 10 10 C 1.50706 * 119.92510 * 179.72347 * 9 8 7 11 11 N 1.46497 * 109.47174 * 269.73157 * 10 9 8 12 12 C 1.34777 * 119.99525 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00463 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99675 * 179.72583 * 12 11 10 15 15 C 1.53004 * 109.47208 * 180.27843 * 14 12 11 16 16 C 1.52997 * 109.47000 * 179.97438 * 15 14 12 17 17 C 1.53011 * 109.46712 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.46921 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99765 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00083 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00147 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00278 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47002 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47093 * 119.99802 * 22 20 18 25 25 H 1.48490 * 109.47068 * 240.00064 * 22 20 18 26 26 C 1.37966 * 120.15262 * 359.45617 * 9 8 7 27 27 H 1.08999 * 109.47183 * 59.99301 * 1 2 3 28 28 H 1.08998 * 109.47135 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46654 * 299.99455 * 1 2 3 30 30 H 1.08006 * 120.07274 * 0.02562 * 6 5 3 31 31 H 1.07998 * 119.92479 * 180.02562 * 7 6 5 32 32 H 1.07995 * 119.84978 * 180.26665 * 8 7 6 33 33 H 1.08995 * 109.46956 * 149.72861 * 10 9 8 34 34 H 1.09001 * 109.46317 * 29.73307 * 10 9 8 35 35 H 0.97000 * 120.00580 * 0.02562 * 11 10 9 36 36 H 1.09009 * 109.47352 * 300.27556 * 14 12 11 37 37 H 1.08998 * 109.47585 * 60.27844 * 14 12 11 38 38 H 1.09000 * 109.46887 * 300.00372 * 15 14 12 39 39 H 1.08998 * 109.46846 * 59.99549 * 15 14 12 40 40 H 1.08995 * 109.47672 * 299.99669 * 16 15 14 41 41 H 1.09001 * 109.47109 * 60.00906 * 16 15 14 42 42 H 1.09003 * 109.46627 * 299.99937 * 17 16 15 43 43 H 1.08992 * 109.47177 * 60.00618 * 17 16 15 44 44 H 0.96999 * 120.00235 * 180.02562 * 21 20 18 45 45 H 1.08007 * 120.07693 * 180.24607 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5388 1.2775 0.0006 6 6 4.3025 0.1083 0.0017 7 6 5.6794 0.1877 0.0027 8 6 6.3045 1.4224 -0.0028 9 6 5.5541 2.5847 0.0018 10 6 6.2435 3.9248 0.0020 11 7 6.4658 4.3594 1.3833 12 6 7.0722 5.5375 1.6296 13 8 7.4336 6.2381 0.7079 14 6 7.2953 5.9875 3.0505 15 6 7.9908 7.3503 3.0506 16 6 8.2167 7.8074 4.4932 17 6 8.9128 9.1700 4.4932 18 6 9.1358 9.6200 5.9141 19 1 8.8137 8.9963 6.7349 20 6 9.7520 10.8273 6.1662 21 7 10.1456 11.5861 5.1667 22 14 10.0279 11.3855 7.9274 23 1 9.4984 10.3590 8.8606 24 1 11.4820 11.5683 8.1667 25 1 9.3231 12.6726 8.1548 26 6 4.1759 2.5198 0.0007 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 3.8159 -0.8559 0.0017 31 1 6.2712 -0.7157 0.0031 32 1 7.3830 1.4789 -0.0063 33 1 5.6189 4.6548 -0.5126 34 1 7.2016 3.8404 -0.5110 35 1 6.1771 3.7990 2.1205 36 1 6.3354 6.0694 3.5607 37 1 7.9209 5.2603 3.5680 38 1 8.9506 7.2685 2.5405 39 1 7.3652 8.0775 2.5331 40 1 7.2568 7.8895 5.0029 41 1 8.8422 7.0803 5.0110 42 1 9.8728 9.0875 3.9836 43 1 8.2877 9.8974 3.9754 44 1 10.5794 12.4353 5.3440 45 1 3.5913 3.4279 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588161516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:10 Heat of formation + Delta-G solvation = -145.950638 kcal Electronic energy + Delta-G solvation = -24592.637881 eV Core-core repulsion = 20766.244693 eV Total energy + Delta-G solvation = -3826.393188 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.71988 -40.88368 -39.89129 -37.57418 -36.72046 -36.00247 -34.60060 -32.91199 -32.32338 -31.36055 -28.83167 -28.02348 -26.60125 -25.17038 -24.06191 -22.81498 -21.80847 -21.76177 -21.27358 -18.96922 -18.41736 -18.28331 -17.75190 -17.45951 -17.11597 -16.96927 -16.90857 -16.47034 -16.28049 -15.49394 -15.34186 -14.80309 -14.63755 -14.57283 -14.51274 -14.08537 -14.00055 -13.58817 -13.48358 -13.42035 -13.24572 -13.08743 -12.83333 -12.71215 -12.31267 -12.15257 -12.13818 -12.11943 -11.87873 -11.70189 -11.36614 -11.35454 -11.16274 -10.86671 -10.55092 -10.16617 -10.09855 -9.97040 -8.18196 -6.30352 -0.41285 0.17457 1.38624 1.40744 1.41727 1.55191 1.60448 1.65892 2.23576 2.42486 2.78006 3.14525 3.48939 3.61016 3.81521 3.87867 4.03815 4.08776 4.16515 4.19534 4.22591 4.29671 4.30283 4.50397 4.60278 4.68559 4.70868 4.73557 4.78498 4.86642 4.90006 4.91218 5.16677 5.20612 5.21151 5.33746 5.34320 5.35576 5.42923 5.43418 5.58555 5.77540 5.79365 5.89060 6.26165 6.54032 6.57880 6.88355 7.26468 7.39318 8.94177 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.022223 B = 0.001657 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.637668 B =16892.303790 C =17470.816332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.507 3.493 4 O -0.541 6.541 5 C -0.147 4.147 6 C -0.048 4.048 7 C -0.124 4.124 8 C -0.056 4.056 9 C -0.118 4.118 10 C 0.161 3.839 11 N -0.716 5.716 12 C 0.513 3.487 13 O -0.587 6.587 14 C -0.128 4.128 15 C -0.096 4.096 16 C -0.096 4.096 17 C 0.017 3.983 18 C -0.542 4.542 19 H 0.066 0.934 20 C -0.007 4.007 21 N -0.937 5.937 22 Si 0.970 3.030 23 H -0.258 1.258 24 H -0.278 1.278 25 H -0.280 1.280 26 C -0.046 4.046 27 H 0.061 0.939 28 H 0.137 0.863 29 H 0.061 0.939 30 H 0.158 0.842 31 H 0.167 0.833 32 H 0.153 0.847 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.416 0.584 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.045 0.955 39 H 0.041 0.959 40 H 0.059 0.941 41 H 0.062 0.938 42 H -0.014 1.014 43 H -0.016 1.016 44 H 0.263 0.737 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.800 -34.102 -11.178 39.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.354 3.646 4 O -0.433 6.433 5 C -0.148 4.148 6 C -0.066 4.066 7 C -0.142 4.142 8 C -0.074 4.074 9 C -0.118 4.118 10 C 0.038 3.962 11 N -0.369 5.369 12 C 0.301 3.699 13 O -0.466 6.466 14 C -0.168 4.168 15 C -0.135 4.135 16 C -0.134 4.134 17 C -0.020 4.020 18 C -0.580 4.580 19 H 0.084 0.916 20 C -0.204 4.204 21 N -0.578 5.578 22 Si 0.794 3.206 23 H -0.181 1.181 24 H -0.204 1.204 25 H -0.205 1.205 26 C -0.065 4.065 27 H 0.080 0.920 28 H 0.155 0.845 29 H 0.080 0.920 30 H 0.175 0.825 31 H 0.185 0.815 32 H 0.170 0.830 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.253 0.747 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.004 0.996 43 H 0.002 0.998 44 H 0.071 0.929 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.715 -33.188 -11.882 38.596 hybrid contribution -0.251 1.026 0.675 1.254 sum -15.966 -32.162 -11.207 37.616 Atomic orbital electron populations 1.23601 0.74259 1.06037 1.02539 1.86520 1.25207 1.31478 1.83782 1.21547 0.89767 0.81492 0.71796 1.90846 1.67661 1.37245 1.47521 1.19111 0.88473 0.95688 1.11525 1.21786 0.94490 0.97812 0.92488 1.21552 0.93987 0.98962 0.99674 1.21723 1.01602 0.91324 0.92800 1.19645 0.92514 0.95101 1.04559 1.20133 1.00265 0.91974 0.83798 1.45977 1.60901 1.21046 1.08978 1.21181 0.76036 0.80517 0.92164 1.90706 1.52377 1.55503 1.48063 1.21677 1.04423 0.98192 0.92499 1.21250 0.99739 0.95731 0.96746 1.21453 1.00068 0.96719 0.95126 1.19075 0.94109 0.93310 0.95497 1.21796 1.38155 1.04285 0.93726 0.91577 1.26091 0.95335 0.96924 1.02050 1.70139 1.41603 1.12718 1.33331 0.85327 0.77866 0.78295 0.79104 1.18126 1.20412 1.20534 1.21153 0.94343 0.96816 0.94200 0.92032 0.84454 0.92040 0.82451 0.81510 0.82956 0.91887 0.90102 0.74694 0.86630 0.86081 0.93638 0.94027 0.92229 0.91938 0.99567 0.99765 0.92878 0.85869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.35 -4.90 9.82 -56.21 -0.55 -5.45 16 3 C 0.51 9.37 7.90 70.33 0.56 9.93 16 4 O -0.54 -13.62 16.14 19.94 0.32 -13.30 16 5 C -0.15 -2.18 5.87 -20.10 -0.12 -2.30 16 6 C -0.05 -0.42 9.62 22.54 0.22 -0.20 16 7 C -0.12 -0.73 10.03 22.23 0.22 -0.51 16 8 C -0.06 -0.46 9.69 22.33 0.22 -0.24 16 9 C -0.12 -1.52 5.24 -19.90 -0.10 -1.62 16 10 C 0.16 2.76 5.80 85.64 0.50 3.25 16 11 N -0.72 -12.84 5.55 -466.79 -2.59 -15.43 16 12 C 0.51 13.62 7.83 87.66 0.69 14.31 16 13 O -0.59 -21.65 15.98 -3.04 -0.05 -21.69 16 14 C -0.13 -3.15 5.70 29.85 0.17 -2.98 16 15 C -0.10 -3.51 4.50 30.59 0.14 -3.37 16 16 C -0.10 -3.96 5.15 30.60 0.16 -3.81 16 17 C 0.02 0.96 4.97 29.85 0.15 1.10 16 18 C -0.54 -31.72 9.11 25.60 0.23 -31.48 16 19 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 20 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 21 N -0.94 -59.39 13.29 21.45 0.28 -59.10 16 22 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 C -0.05 -0.74 9.24 22.54 0.21 -0.53 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 28 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.16 0.79 7.61 -2.91 -0.02 0.76 16 31 H 0.17 -0.01 8.06 -2.91 -0.02 -0.03 16 32 H 0.15 0.73 8.06 -2.91 -0.02 0.70 16 33 H 0.06 1.29 8.08 -2.39 -0.02 1.27 16 34 H 0.08 1.39 8.08 -2.39 -0.02 1.37 16 35 H 0.42 5.01 8.46 -92.71 -0.78 4.22 16 36 H 0.12 2.32 8.14 -2.38 -0.02 2.30 16 37 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 39 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 40 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 42 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 43 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 44 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 45 H 0.12 2.33 7.65 -2.91 -0.02 2.30 16 Total: -1.00 -82.59 389.84 4.53 -78.06 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 0.20 Total: 6.68 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 4.89 Total: -16.94 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -2.30 Total: -74.53 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -0.28 Total: -40.45 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -82.59 4.53 -78.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588161516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.886 kcal (2) G-P(sol) polarization free energy of solvation -82.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds