Wall clock time and date at job start Tue Mar 31 2020 12:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 116.99679 * 2 1 4 4 O 1.20823 * 120.00451 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00096 * 179.97438 * 3 2 1 6 6 C 1.50694 * 109.47531 * 179.97438 * 5 3 2 7 7 C 1.38304 * 119.96585 * 269.97968 * 6 5 3 8 8 C 1.38263 * 120.14321 * 180.02562 * 7 6 5 9 9 C 1.38140 * 120.06595 * 359.67702 * 8 7 6 10 10 C 1.38845 * 119.92759 * 0.59742 * 9 8 7 11 11 N 1.39931 * 120.06767 * 179.69839 * 10 9 8 12 12 C 1.34778 * 119.99802 * 326.55021 * 11 10 9 13 13 O 1.21290 * 120.00242 * 354.72922 * 12 11 10 14 14 C 1.50705 * 119.99779 * 174.72746 * 12 11 10 15 15 C 1.53001 * 109.46848 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.46602 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.46434 * 180.02562 * 16 15 14 18 18 C 1.50705 * 109.46681 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00016 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99706 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00515 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99769 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47007 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47480 * 120.00276 * 22 20 18 25 25 H 1.48499 * 109.47056 * 240.00335 * 22 20 18 26 26 C 1.38089 * 119.96715 * 89.99996 * 6 5 3 27 27 H 1.09005 * 109.46865 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47428 * 300.00196 * 1 2 3 29 29 H 1.09006 * 109.47533 * 60.00167 * 1 2 3 30 30 H 1.09006 * 109.46901 * 59.99884 * 5 3 2 31 31 H 1.09000 * 109.47297 * 300.00181 * 5 3 2 32 32 H 1.08005 * 119.93163 * 0.02562 * 7 6 5 33 33 H 1.08001 * 119.96605 * 179.97438 * 8 7 6 34 34 H 1.08001 * 120.03164 * 180.32210 * 9 8 7 35 35 H 0.96995 * 119.99879 * 146.55091 * 11 10 9 36 36 H 1.08999 * 109.46557 * 60.00179 * 14 12 11 37 37 H 1.08999 * 109.47090 * 300.00185 * 14 12 11 38 38 H 1.08999 * 109.47457 * 299.99998 * 15 14 12 39 39 H 1.08994 * 109.46896 * 60.00670 * 15 14 12 40 40 H 1.08997 * 109.47294 * 299.99569 * 16 15 14 41 41 H 1.08994 * 109.47093 * 60.00614 * 16 15 14 42 42 H 1.08999 * 109.47253 * 299.99595 * 17 16 15 43 43 H 1.08999 * 109.47736 * 60.00410 * 17 16 15 44 44 H 0.97001 * 120.00185 * 179.97438 * 21 20 18 45 45 H 1.08009 * 120.03194 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 6 3.9935 2.7201 -0.0002 7 6 4.1903 3.3816 -1.1987 8 6 4.5828 4.7074 -1.2037 9 6 4.7732 5.3773 -0.0107 10 6 4.5820 4.7143 1.1942 11 7 4.7802 5.3882 2.4044 12 6 5.7282 6.3418 2.4973 13 8 6.4729 6.5497 1.5628 14 6 5.8629 7.1497 3.7623 15 6 7.0060 8.1546 3.6064 16 6 7.1431 8.9744 4.8910 17 6 8.2858 9.9797 4.7347 18 6 8.4204 10.7876 5.9998 19 1 7.7570 10.6028 6.8318 20 6 9.3906 11.7627 6.0950 21 7 10.1981 11.9882 5.0817 22 14 9.5579 12.7637 7.6633 23 1 8.5368 12.3191 8.6456 24 1 10.9143 12.5658 8.2345 25 1 9.3553 14.2024 7.3563 26 6 4.1886 3.3823 1.1958 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.9563 0.7807 -0.8892 31 1 3.9557 0.7811 0.8908 32 1 4.0370 2.8616 -2.1328 33 1 4.7361 5.2211 -2.1412 34 1 5.0748 6.4143 -0.0152 35 1 4.2354 5.1691 3.1764 36 1 6.0769 6.4832 4.5979 37 1 4.9322 7.6841 3.9529 38 1 7.9365 7.6198 3.4160 39 1 6.7924 8.8210 2.7708 40 1 6.2127 9.5092 5.0817 41 1 7.3569 8.3077 5.7263 42 1 9.2164 9.4453 4.5438 43 1 8.0716 10.6464 3.8995 44 1 10.8803 12.6745 5.1486 45 1 4.0354 2.8649 2.1314 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588161683.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:24 Heat of formation + Delta-G solvation = -119.522110 kcal Electronic energy + Delta-G solvation = -24872.500173 eV Core-core repulsion = 21047.253013 eV Total energy + Delta-G solvation = -3825.247161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.05374 -40.51317 -38.81604 -36.89098 -35.25731 -34.78621 -33.10492 -32.61204 -30.54527 -29.52168 -28.87212 -27.21831 -25.74254 -23.28370 -22.89438 -21.99034 -21.13065 -20.00613 -19.95442 -18.07408 -17.80786 -17.10540 -16.88620 -16.60909 -16.41487 -16.12798 -15.85385 -15.16080 -14.55055 -14.35937 -14.18039 -14.02482 -13.81649 -13.77182 -13.43763 -12.89289 -12.65001 -12.54047 -12.48305 -12.20953 -11.96746 -11.70755 -11.62500 -11.48999 -11.25693 -11.00575 -10.93445 -10.57089 -10.49219 -10.47921 -10.43612 -9.88086 -9.62609 -9.24418 -9.04524 -8.97990 -8.30925 -8.27949 -5.95473 -3.98007 1.02381 1.11538 1.78607 2.31816 2.60462 2.92537 3.33142 3.40404 3.44261 3.61624 4.14078 4.47475 4.48721 4.51102 4.64662 4.65159 4.72690 4.80448 4.92799 4.99968 5.07014 5.13904 5.22296 5.30103 5.35764 5.40062 5.44289 5.68365 5.80207 5.93431 6.09261 6.10108 6.13204 6.26599 6.30193 6.34634 6.51702 6.81306 6.83715 6.99173 7.18096 7.25804 7.31951 7.73991 7.89344 8.05473 8.07457 8.47548 9.09886 9.65805 11.15830 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.035923 B = 0.001658 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.267960 B =16884.033620 C =17395.181335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.459 3.541 4 O -0.495 6.495 5 C -0.070 4.070 6 C -0.065 4.065 7 C -0.122 4.122 8 C -0.098 4.098 9 C -0.115 4.115 10 C 0.155 3.845 11 N -0.682 5.682 12 C 0.512 3.488 13 O -0.513 6.513 14 C -0.138 4.138 15 C -0.104 4.104 16 C -0.110 4.110 17 C 0.019 3.981 18 C -0.520 4.520 19 H 0.055 0.945 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.132 4.132 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.137 0.863 35 H 0.411 0.589 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.259 0.741 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.093 -26.954 -11.678 35.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.301 3.699 4 O -0.381 6.381 5 C -0.107 4.107 6 C -0.066 4.066 7 C -0.140 4.140 8 C -0.116 4.116 9 C -0.135 4.135 10 C 0.061 3.939 11 N -0.328 5.328 12 C 0.301 3.699 13 O -0.387 6.387 14 C -0.177 4.177 15 C -0.142 4.142 16 C -0.148 4.148 17 C -0.018 4.018 18 C -0.559 4.559 19 H 0.073 0.927 20 C -0.146 4.146 21 N -0.534 5.534 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.153 4.153 27 H 0.120 0.880 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.145 0.855 34 H 0.155 0.845 35 H 0.246 0.754 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.620 -26.316 -12.347 34.520 hybrid contribution -0.367 0.511 1.253 1.402 sum -18.987 -25.805 -11.094 33.904 Atomic orbital electron populations 1.23277 0.76147 1.03727 1.02681 1.86501 1.23597 1.33529 1.84335 1.23735 0.91973 0.81409 0.72800 1.90720 1.67013 1.36227 1.44112 1.20283 0.87796 0.95735 1.06885 1.18911 1.00746 0.93618 0.93338 1.20915 1.00997 0.95096 0.97028 1.21008 0.98401 0.94303 0.97912 1.21253 1.00236 1.01126 0.90909 1.17696 0.99091 0.90925 0.86221 1.43770 1.37921 1.38835 1.12247 1.21350 0.78594 0.79187 0.90785 1.90726 1.41767 1.66092 1.40118 1.21830 1.02953 0.98738 0.94221 1.21476 0.96193 0.96475 1.00063 1.21651 1.00732 0.97899 0.94523 1.19105 0.92590 0.93136 0.96973 1.21324 1.16087 1.18082 1.00380 0.92688 1.25041 0.95870 0.97319 0.96328 1.69984 1.19867 1.33034 1.30536 0.86558 0.77861 0.80048 0.83645 1.19787 1.21050 1.21055 1.20653 1.04174 0.92500 0.97955 0.88039 0.91824 0.91846 0.86510 0.86626 0.86098 0.85464 0.84538 0.75371 0.88796 0.88670 0.91675 0.91685 0.93412 0.93412 0.96556 0.96558 0.93100 0.85836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 10.56 101.05 1.07 1.24 16 2 O -0.36 -2.57 10.57 -39.25 -0.41 -2.99 16 3 C 0.46 3.77 7.95 36.01 0.29 4.05 16 4 O -0.49 -5.75 15.78 -18.75 -0.30 -6.04 16 5 C -0.07 -0.41 5.94 -29.04 -0.17 -0.58 16 6 C -0.07 -0.58 4.37 -104.65 -0.46 -1.04 16 7 C -0.12 -1.12 9.70 -39.55 -0.38 -1.50 16 8 C -0.10 -1.03 10.04 -39.61 -0.40 -1.43 16 9 C -0.12 -1.45 8.66 -39.39 -0.34 -1.79 16 10 C 0.16 1.81 6.28 -83.70 -0.53 1.29 16 11 N -0.68 -7.27 5.34 -9.86 -0.05 -7.32 16 12 C 0.51 6.96 7.57 -10.98 -0.08 6.88 16 13 O -0.51 -8.98 13.68 5.55 0.08 -8.90 16 14 C -0.14 -1.74 5.70 -27.88 -0.16 -1.90 16 15 C -0.10 -1.81 4.50 -26.73 -0.12 -1.94 16 16 C -0.11 -2.25 5.15 -26.73 -0.14 -2.38 16 17 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 18 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 19 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -27.50 13.29 55.43 0.74 -26.76 16 22 Si 0.89 21.91 29.54 -169.99 -5.02 16.88 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 26 C -0.13 -1.28 9.62 -39.40 -0.38 -1.66 16 27 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.33 8.13 -51.93 -0.42 -0.10 16 29 H 0.06 0.32 8.13 -51.93 -0.42 -0.10 16 30 H 0.12 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.12 0.45 8.08 -51.93 -0.42 0.03 16 32 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.14 1.93 6.43 -52.49 -0.34 1.59 16 35 H 0.41 2.98 8.82 -40.82 -0.36 2.62 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 39 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 45 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 LS Contribution 386.18 15.07 5.82 5.82 Total: -1.00 -36.62 386.18 -8.50 -45.11 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.99 Total: -1.61 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -2.35 Total: -14.19 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.68 Total: -34.08 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.63 Total: -17.94 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.62 -8.50 -45.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588161683.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.409 kcal (2) G-P(sol) polarization free energy of solvation -36.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds