Wall clock time and date at job start Tue Mar 31 2020 12:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 116.99679 * 2 1 4 4 O 1.20823 * 120.00451 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00096 * 179.97438 * 3 2 1 6 6 C 1.50694 * 109.47531 * 179.97438 * 5 3 2 7 7 C 1.38304 * 119.96585 * 269.97968 * 6 5 3 8 8 C 1.38263 * 120.14321 * 180.02562 * 7 6 5 9 9 C 1.38140 * 120.06595 * 359.67702 * 8 7 6 10 10 C 1.38845 * 119.92759 * 0.59742 * 9 8 7 11 11 N 1.39931 * 120.06767 * 179.69839 * 10 9 8 12 12 C 1.34778 * 119.99802 * 326.55021 * 11 10 9 13 13 O 1.21290 * 120.00242 * 354.72922 * 12 11 10 14 14 C 1.50705 * 119.99779 * 174.72746 * 12 11 10 15 15 C 1.53001 * 109.46848 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.46602 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.46434 * 180.02562 * 16 15 14 18 18 C 1.50705 * 109.46681 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00016 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99706 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00515 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99769 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47007 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47480 * 120.00276 * 22 20 18 25 25 H 1.48499 * 109.47056 * 240.00335 * 22 20 18 26 26 C 1.38089 * 119.96715 * 89.99996 * 6 5 3 27 27 H 1.09005 * 109.46865 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47428 * 300.00196 * 1 2 3 29 29 H 1.09006 * 109.47533 * 60.00167 * 1 2 3 30 30 H 1.09006 * 109.46901 * 59.99884 * 5 3 2 31 31 H 1.09000 * 109.47297 * 300.00181 * 5 3 2 32 32 H 1.08005 * 119.93163 * 0.02562 * 7 6 5 33 33 H 1.08001 * 119.96605 * 179.97438 * 8 7 6 34 34 H 1.08001 * 120.03164 * 180.32210 * 9 8 7 35 35 H 0.96995 * 119.99879 * 146.55091 * 11 10 9 36 36 H 1.08999 * 109.46557 * 60.00179 * 14 12 11 37 37 H 1.08999 * 109.47090 * 300.00185 * 14 12 11 38 38 H 1.08999 * 109.47457 * 299.99998 * 15 14 12 39 39 H 1.08994 * 109.46896 * 60.00670 * 15 14 12 40 40 H 1.08997 * 109.47294 * 299.99569 * 16 15 14 41 41 H 1.08994 * 109.47093 * 60.00614 * 16 15 14 42 42 H 1.08999 * 109.47253 * 299.99595 * 17 16 15 43 43 H 1.08999 * 109.47736 * 60.00410 * 17 16 15 44 44 H 0.97001 * 120.00185 * 179.97438 * 21 20 18 45 45 H 1.08009 * 120.03194 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 6 3.9935 2.7201 -0.0002 7 6 4.1903 3.3816 -1.1987 8 6 4.5828 4.7074 -1.2037 9 6 4.7732 5.3773 -0.0107 10 6 4.5820 4.7143 1.1942 11 7 4.7802 5.3882 2.4044 12 6 5.7282 6.3418 2.4973 13 8 6.4729 6.5497 1.5628 14 6 5.8629 7.1497 3.7623 15 6 7.0060 8.1546 3.6064 16 6 7.1431 8.9744 4.8910 17 6 8.2858 9.9797 4.7347 18 6 8.4204 10.7876 5.9998 19 1 7.7570 10.6028 6.8318 20 6 9.3906 11.7627 6.0950 21 7 10.1981 11.9882 5.0817 22 14 9.5579 12.7637 7.6633 23 1 8.5368 12.3191 8.6456 24 1 10.9143 12.5658 8.2345 25 1 9.3553 14.2024 7.3563 26 6 4.1886 3.3823 1.1958 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.9563 0.7807 -0.8892 31 1 3.9557 0.7811 0.8908 32 1 4.0370 2.8616 -2.1328 33 1 4.7361 5.2211 -2.1412 34 1 5.0748 6.4143 -0.0152 35 1 4.2354 5.1691 3.1764 36 1 6.0769 6.4832 4.5979 37 1 4.9322 7.6841 3.9529 38 1 7.9365 7.6198 3.4160 39 1 6.7924 8.8210 2.7708 40 1 6.2127 9.5092 5.0817 41 1 7.3569 8.3077 5.7263 42 1 9.2164 9.4453 4.5438 43 1 8.0716 10.6464 3.8995 44 1 10.8803 12.6745 5.1486 45 1 4.0354 2.8649 2.1314 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588161683.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:23 Heat of formation + Delta-G solvation = -141.937852 kcal Electronic energy + Delta-G solvation = -24873.472193 eV Core-core repulsion = 21047.253013 eV Total energy + Delta-G solvation = -3826.219180 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.77377 -41.34426 -39.67183 -37.51887 -36.71240 -35.94905 -34.64099 -33.74831 -31.85807 -30.64320 -29.60795 -27.74202 -27.45735 -24.72910 -23.65262 -23.09627 -22.07619 -21.59802 -20.86705 -18.67667 -18.64419 -18.40708 -17.90841 -17.53071 -17.29752 -17.19283 -16.89080 -16.50664 -16.07393 -15.40325 -15.38007 -14.74514 -14.58765 -14.55153 -14.39900 -14.18849 -13.92321 -13.59411 -13.48911 -13.31291 -13.03085 -12.92895 -12.84642 -12.67664 -12.32161 -12.21903 -12.16154 -12.14476 -11.77857 -11.60493 -11.42556 -11.36784 -11.31972 -11.13814 -10.79085 -10.55743 -9.81574 -9.11969 -8.18900 -6.31018 0.23335 0.33890 1.20739 1.40465 1.41283 1.54736 1.54777 1.86916 2.02637 2.41872 2.85103 3.14002 3.55181 3.68521 3.90947 4.00333 4.00866 4.13511 4.16202 4.29991 4.32922 4.35024 4.35736 4.50385 4.62120 4.64401 4.67299 4.73456 4.74250 4.82286 4.86581 4.98771 5.17956 5.29510 5.32117 5.33879 5.38078 5.42314 5.52761 5.55041 5.57486 5.78144 5.88200 6.03780 6.25242 6.40670 6.75462 6.87755 7.12064 7.38761 8.93459 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.035923 B = 0.001658 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.267960 B =16884.033620 C =17395.181335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.363 6.363 3 C 0.462 3.538 4 O -0.536 6.536 5 C -0.065 4.065 6 C -0.066 4.066 7 C -0.123 4.123 8 C -0.109 4.109 9 C -0.144 4.144 10 C 0.132 3.868 11 N -0.664 5.664 12 C 0.512 3.488 13 O -0.563 6.563 14 C -0.125 4.125 15 C -0.097 4.097 16 C -0.096 4.096 17 C 0.017 3.983 18 C -0.542 4.542 19 H 0.066 0.934 20 C -0.006 4.006 21 N -0.937 5.937 22 Si 0.969 3.031 23 H -0.257 1.257 24 H -0.279 1.279 25 H -0.280 1.280 26 C -0.132 4.132 27 H 0.130 0.870 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.138 0.862 34 H 0.109 0.891 35 H 0.428 0.572 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.045 0.955 39 H 0.043 0.957 40 H 0.061 0.939 41 H 0.063 0.937 42 H -0.015 1.015 43 H -0.016 1.016 44 H 0.262 0.738 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.807 -29.433 -10.046 37.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.306 3.694 4 O -0.426 6.426 5 C -0.102 4.102 6 C -0.067 4.067 7 C -0.142 4.142 8 C -0.128 4.128 9 C -0.164 4.164 10 C 0.038 3.962 11 N -0.311 5.311 12 C 0.302 3.698 13 O -0.440 6.440 14 C -0.165 4.165 15 C -0.135 4.135 16 C -0.133 4.133 17 C -0.020 4.020 18 C -0.580 4.580 19 H 0.085 0.915 20 C -0.204 4.204 21 N -0.578 5.578 22 Si 0.794 3.206 23 H -0.181 1.181 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.152 4.152 27 H 0.148 0.852 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.163 0.837 31 H 0.161 0.839 32 H 0.164 0.836 33 H 0.155 0.845 34 H 0.127 0.873 35 H 0.267 0.733 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.004 0.996 43 H 0.003 0.997 44 H 0.071 0.929 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -20.380 -28.849 -10.694 36.905 hybrid contribution 0.126 1.201 0.649 1.371 sum -20.254 -27.649 -10.045 35.715 Atomic orbital electron populations 1.23504 0.75107 1.05549 1.02305 1.86500 1.24679 1.32885 1.83862 1.24132 0.92718 0.81043 0.71469 1.90715 1.68055 1.37514 1.46275 1.20405 0.86240 0.93958 1.09614 1.19302 0.99375 0.95215 0.92826 1.21272 0.99843 0.94501 0.98546 1.21218 0.98583 0.95277 0.97708 1.21226 1.02209 1.00428 0.92583 1.17899 1.00273 0.92020 0.85981 1.43519 1.37087 1.37713 1.12761 1.21466 0.78523 0.79490 0.90359 1.90719 1.43899 1.67672 1.41725 1.21699 1.01905 0.98123 0.94742 1.21259 0.97576 0.96864 0.97784 1.21448 0.98561 0.96968 0.96364 1.19072 0.93750 0.93806 0.95363 1.21798 1.16394 1.18518 1.01258 0.91540 1.26085 0.95386 0.98693 1.00191 1.70138 1.20647 1.33897 1.33118 0.85336 0.78273 0.78026 0.79008 1.18093 1.20456 1.20537 1.20965 1.03059 0.91607 0.99546 0.85154 0.92246 0.92259 0.83694 0.83913 0.83587 0.84460 0.87259 0.73261 0.85656 0.85968 0.93647 0.93814 0.92059 0.91878 0.99625 0.99726 0.92881 0.83314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 113.37 1.20 1.43 16 2 O -0.36 -4.25 10.57 -51.39 -0.54 -4.79 16 3 C 0.46 6.51 7.95 71.24 0.57 7.08 16 4 O -0.54 -11.78 15.78 21.97 0.35 -11.44 16 5 C -0.07 -0.55 5.94 29.10 0.17 -0.37 16 6 C -0.07 -1.03 4.37 -19.89 -0.09 -1.12 16 7 C -0.12 -2.10 9.70 22.29 0.22 -1.88 16 8 C -0.11 -2.35 10.04 22.25 0.22 -2.12 16 9 C -0.14 -3.83 8.66 22.39 0.19 -3.63 16 10 C 0.13 3.05 6.28 38.15 0.24 3.29 16 11 N -0.66 -13.53 5.34 -303.50 -1.62 -15.15 16 12 C 0.51 13.89 7.57 87.66 0.66 14.55 16 13 O -0.56 -20.75 13.68 -3.06 -0.04 -20.79 16 14 C -0.13 -2.98 5.70 29.85 0.17 -2.81 16 15 C -0.10 -3.44 4.50 30.60 0.14 -3.30 16 16 C -0.10 -3.88 5.15 30.60 0.16 -3.72 16 17 C 0.02 0.95 4.97 29.85 0.15 1.10 16 18 C -0.54 -31.50 9.11 25.60 0.23 -31.27 16 19 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 20 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 21 N -0.94 -59.17 13.29 21.45 0.28 -58.88 16 22 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 23 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 26 C -0.13 -2.30 9.62 22.39 0.22 -2.08 16 27 H 0.13 0.25 8.14 -2.38 -0.02 0.23 16 28 H 0.06 0.54 8.13 -2.39 -0.02 0.52 16 29 H 0.06 0.53 8.13 -2.38 -0.02 0.51 16 30 H 0.15 0.45 8.08 -2.38 -0.02 0.43 16 31 H 0.14 0.48 8.08 -2.39 -0.02 0.46 16 32 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.11 3.43 6.43 -2.91 -0.02 3.41 16 35 H 0.43 5.27 8.82 -92.71 -0.82 4.45 16 36 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 39 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 40 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 42 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 43 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 44 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 45 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -83.89 386.18 5.53 -78.36 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.17 Total: 10.51 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 4.91 Total: -24.78 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -1.34 Total: -74.03 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -0.24 Total: -37.02 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -83.89 5.53 -78.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588161683.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.583 kcal (2) G-P(sol) polarization free energy of solvation -83.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds