Wall clock time and date at job start Tue Mar 31 2020 12:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 116.99867 * 2 1 4 4 O 1.20830 * 120.00323 * 359.72425 * 3 2 1 5 5 C 1.50706 * 120.00024 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.46564 * 299.72723 * 5 3 2 7 7 N 1.46493 * 109.47128 * 179.72247 * 5 3 2 8 8 C 1.34782 * 119.99833 * 85.00461 * 7 5 3 9 9 O 1.21280 * 120.00376 * 359.97438 * 8 7 5 10 10 C 1.50705 * 120.00038 * 179.97438 * 8 7 5 11 11 C 1.52989 * 109.47103 * 179.97438 * 10 8 7 12 12 C 1.53008 * 109.47272 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47144 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46596 * 180.02562 * 13 12 11 15 15 H 1.07992 * 120.00209 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99540 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99611 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00188 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47078 * 89.99514 * 18 16 14 20 20 H 1.48497 * 109.47307 * 209.99778 * 18 16 14 21 21 H 1.48500 * 109.47282 * 329.99981 * 18 16 14 22 22 C 1.50700 * 109.46871 * 59.72047 * 5 3 2 23 23 C 1.38240 * 119.99637 * 79.73175 * 22 5 3 24 24 C 1.38234 * 119.99607 * 179.80848 * 23 22 5 25 25 C 1.38241 * 120.00148 * 0.39350 * 24 23 22 26 26 C 1.38232 * 119.99642 * 359.85768 * 25 24 23 27 27 C 1.38227 * 120.00401 * 359.95767 * 26 25 24 28 28 H 1.09002 * 109.47225 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46864 * 300.00062 * 1 2 3 30 30 H 1.09001 * 109.47271 * 60.00074 * 1 2 3 31 31 H 0.96997 * 120.00630 * 264.99845 * 7 5 3 32 32 H 1.09006 * 109.46904 * 299.99520 * 10 8 7 33 33 H 1.09001 * 109.47166 * 59.98954 * 10 8 7 34 34 H 1.09005 * 109.47181 * 299.99120 * 11 10 8 35 35 H 1.09001 * 109.47833 * 59.99522 * 11 10 8 36 36 H 1.08997 * 109.46902 * 300.00012 * 12 11 10 37 37 H 1.08996 * 109.47086 * 59.99574 * 12 11 10 38 38 H 1.09001 * 109.46771 * 299.98986 * 13 12 11 39 39 H 1.08996 * 109.47504 * 59.99797 * 13 12 11 40 40 H 0.96996 * 119.99715 * 180.02562 * 17 16 14 41 41 H 1.07997 * 119.99998 * 359.97438 * 23 22 5 42 42 H 1.08005 * 119.99839 * 180.22936 * 24 23 22 43 43 H 1.08001 * 119.99609 * 179.83425 * 25 24 23 44 44 H 1.08002 * 119.99539 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.00195 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0050 5 6 3.5663 1.2749 -0.0006 6 1 3.9561 0.7848 0.8916 7 7 3.9817 2.6797 -0.0072 8 6 4.0754 3.3601 1.1525 9 8 3.8155 2.8095 2.2014 10 6 4.5032 4.8051 1.1459 11 6 4.5268 5.3366 2.5803 12 6 4.9618 6.8035 2.5736 13 6 4.9860 7.3348 4.0082 14 6 5.4138 8.7798 4.0015 15 1 5.6456 9.2700 3.0675 16 6 5.5092 9.4761 5.1878 17 7 5.8830 10.7369 5.1820 18 14 5.1074 8.6284 6.8031 19 1 6.3381 8.0078 7.3559 20 1 4.5799 9.6263 7.7680 21 1 4.0850 7.5770 6.5696 22 6 4.1049 0.5860 -1.2279 23 6 4.0994 1.2398 -2.4459 24 6 4.5970 0.6094 -3.5710 25 6 5.0928 -0.6779 -3.4797 26 6 5.0936 -1.3334 -2.2627 27 6 4.5994 -0.7017 -1.1369 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 4.1893 3.1202 -0.8460 32 1 5.4995 4.8871 0.7112 33 1 3.7993 5.3897 0.5536 34 1 3.5303 5.2548 3.0145 35 1 5.2305 4.7520 3.1730 36 1 5.9582 6.8850 2.1395 37 1 4.2584 7.3883 1.9810 38 1 3.9896 7.2534 4.4426 39 1 5.6896 6.7499 4.6005 40 1 5.9505 11.2266 6.0165 41 1 3.7086 2.2440 -2.5180 42 1 4.5961 1.1215 -4.5219 43 1 5.4792 -1.1713 -4.3593 44 1 5.4806 -2.3392 -2.1915 45 1 4.5997 -1.2141 -0.1862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588905542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:25 Heat of formation + Delta-G solvation = -133.772484 kcal Electronic energy + Delta-G solvation = -25852.839563 eV Core-core repulsion = 22026.974459 eV Total energy + Delta-G solvation = -3825.865103 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.14122 -40.68741 -40.00024 -37.74448 -36.76056 -36.11985 -34.62172 -32.91797 -31.88397 -31.62189 -29.52153 -28.17304 -26.96447 -24.11848 -23.53971 -23.31931 -21.93165 -21.61407 -21.32714 -19.00949 -18.86178 -18.65689 -18.13085 -17.51350 -17.43599 -16.93154 -16.65766 -16.31133 -15.97734 -15.54898 -15.45390 -15.03957 -14.72354 -14.61088 -14.49831 -14.28077 -13.89162 -13.74361 -13.68624 -13.58093 -13.43606 -13.05893 -12.86337 -12.35785 -12.23644 -12.09625 -11.98307 -11.96577 -11.91004 -11.76197 -11.55424 -11.35824 -11.27471 -11.00969 -10.76055 -10.50337 -9.87037 -9.80374 -8.29808 -6.32683 0.21636 0.45706 0.97291 1.21281 1.34211 1.35994 1.48922 1.69334 2.14709 2.35766 2.85390 3.05476 3.28103 3.67429 3.71015 3.82538 3.99428 4.05564 4.13807 4.18409 4.21790 4.24140 4.29738 4.56448 4.58624 4.61670 4.63658 4.66842 4.75019 4.84095 4.93521 5.00913 5.12260 5.13089 5.19431 5.19949 5.28039 5.49565 5.51175 5.59669 5.59784 5.65362 5.68418 6.02311 6.28836 6.30944 6.52088 6.75122 7.05958 7.31961 8.86783 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019124 B = 0.002280 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.780572 B =12276.333075 C =13052.919880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.452 3.548 4 O -0.527 6.527 5 C 0.203 3.797 6 H 0.129 0.871 7 N -0.702 5.702 8 C 0.522 3.478 9 O -0.575 6.575 10 C -0.130 4.130 11 C -0.097 4.097 12 C -0.093 4.093 13 C -0.017 4.017 14 C -0.530 4.530 15 H 0.037 0.963 16 C 0.003 3.997 17 N -0.950 5.950 18 Si 0.948 3.052 19 H -0.265 1.265 20 H -0.282 1.282 21 H -0.254 1.254 22 C -0.109 4.109 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.111 4.111 26 C -0.120 4.120 27 C -0.099 4.099 28 H 0.137 0.863 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.421 0.579 32 H 0.125 0.875 33 H 0.113 0.887 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.011 0.989 39 H 0.015 0.985 40 H 0.266 0.734 41 H 0.128 0.872 42 H 0.146 0.854 43 H 0.148 0.852 44 H 0.149 0.851 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.975 -31.298 -21.673 38.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.270 6.270 3 C 0.294 3.706 4 O -0.415 6.415 5 C 0.096 3.904 6 H 0.147 0.853 7 N -0.356 5.356 8 C 0.311 3.689 9 O -0.454 6.454 10 C -0.169 4.169 11 C -0.136 4.136 12 C -0.131 4.131 13 C -0.055 4.055 14 C -0.568 4.568 15 H 0.056 0.944 16 C -0.194 4.194 17 N -0.591 5.591 18 Si 0.771 3.229 19 H -0.190 1.190 20 H -0.207 1.207 21 H -0.178 1.178 22 C -0.110 4.110 23 C -0.137 4.137 24 C -0.138 4.138 25 C -0.129 4.129 26 C -0.138 4.138 27 C -0.117 4.117 28 H 0.155 0.845 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.260 0.740 32 H 0.143 0.857 33 H 0.131 0.869 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.030 0.970 39 H 0.033 0.967 40 H 0.075 0.925 41 H 0.146 0.854 42 H 0.163 0.837 43 H 0.166 0.834 44 H 0.167 0.833 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.371 -31.244 -20.823 37.929 hybrid contribution -0.462 0.730 0.708 1.117 sum -5.833 -30.514 -20.114 37.010 Atomic orbital electron populations 1.23570 0.74735 1.05913 1.02285 1.86486 1.24933 1.32121 1.83443 1.24543 0.92842 0.81734 0.71498 1.90674 1.67407 1.37427 1.46028 1.19119 0.85876 0.84563 1.00884 0.85337 1.45769 1.68787 1.10591 1.10474 1.21310 0.75014 0.89803 0.82786 1.90688 1.50730 1.71141 1.32832 1.21694 1.05613 0.89998 0.99604 1.21290 1.01242 0.95491 0.95539 1.21335 1.00926 0.94018 0.96826 1.19579 0.95939 0.94081 0.95873 1.21539 1.44890 0.96648 0.93689 0.94426 1.25999 0.94609 0.95393 1.03358 1.70060 1.49901 1.10741 1.28412 0.85691 0.79702 0.78751 0.78727 1.19034 1.20739 1.17787 1.19312 1.03151 0.96116 0.92406 1.21131 0.99852 1.00481 0.92265 1.21422 0.98006 0.95660 0.98753 1.21633 0.97802 0.94790 0.98682 1.21473 0.98983 1.01127 0.92170 1.21213 0.96861 0.93225 1.00440 0.84508 0.92722 0.91777 0.73988 0.85655 0.86867 0.93429 0.92366 0.92042 0.92666 0.97022 0.96685 0.92516 0.85433 0.83666 0.83411 0.83344 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.35 -7.17 10.48 -51.34 -0.54 -7.71 16 3 C 0.45 10.91 7.27 71.24 0.52 11.43 16 4 O -0.53 -15.99 16.07 21.95 0.35 -15.64 16 5 C 0.20 4.05 2.68 43.50 0.12 4.16 16 6 H 0.13 2.69 7.44 -2.39 -0.02 2.67 16 7 N -0.70 -14.15 4.56 -449.68 -2.05 -16.20 16 8 C 0.52 14.12 7.66 87.66 0.67 14.79 16 9 O -0.58 -20.49 15.65 -3.03 -0.05 -20.54 16 10 C -0.13 -3.16 5.70 29.85 0.17 -2.99 16 11 C -0.10 -3.27 4.50 30.59 0.14 -3.13 16 12 C -0.09 -3.67 5.15 30.60 0.16 -3.51 16 13 C -0.02 -0.86 4.04 29.85 0.12 -0.74 16 14 C -0.53 -31.63 9.66 25.60 0.25 -31.38 16 15 H 0.04 2.42 7.99 -2.91 -0.02 2.40 16 16 C 0.00 0.18 5.47 84.66 0.46 0.64 16 17 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 18 Si 0.95 46.60 27.47 68.60 1.88 48.48 16 19 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 21 H -0.25 -11.96 6.54 99.48 0.65 -11.31 16 22 C -0.11 -1.63 4.87 -19.86 -0.10 -1.73 16 23 C -0.12 -1.51 9.05 22.27 0.20 -1.30 16 24 C -0.12 -1.16 10.05 22.27 0.22 -0.94 16 25 C -0.11 -0.92 10.05 22.27 0.22 -0.70 16 26 C -0.12 -1.10 10.05 22.27 0.22 -0.87 16 27 C -0.10 -1.22 9.67 22.27 0.22 -1.00 16 28 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 31 H 0.42 5.96 6.89 -92.71 -0.64 5.32 16 32 H 0.13 2.33 8.14 -2.38 -0.02 2.31 16 33 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.05 1.75 8.10 -2.38 -0.02 1.73 16 35 H 0.06 2.02 8.10 -2.39 -0.02 2.00 16 36 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.01 0.58 7.20 -2.39 -0.02 0.56 16 39 H 0.01 0.72 7.57 -2.39 -0.02 0.70 16 40 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 41 H 0.13 1.40 6.93 -2.91 -0.02 1.38 16 42 H 0.15 0.79 8.06 -2.91 -0.02 0.77 16 43 H 0.15 0.51 8.06 -2.91 -0.02 0.49 16 44 H 0.15 0.67 8.06 -2.91 -0.02 0.65 16 45 H 0.14 1.38 8.04 -2.91 -0.02 1.36 16 Total: -1.00 -81.75 383.07 4.98 -76.76 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.29 Total: 11.30 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 4.79 Total: -15.66 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -1.75 Total: -76.99 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -0.23 Total: -43.89 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.88 Total: 48.48 kcal Total: -81.75 4.98 -76.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588905542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.008 kcal (2) G-P(sol) polarization free energy of solvation -81.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds