Wall clock time and date at job start Tue Mar 31 2020 12:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00003 * 2 1 4 4 C 1.52998 * 109.47316 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46611 * 65.00326 * 4 3 2 6 6 C 1.46500 * 119.99992 * 274.99798 * 5 4 3 7 7 C 1.50699 * 109.47110 * 275.00305 * 6 5 4 8 8 H 1.07996 * 120.00403 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99914 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00116 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00160 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47234 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47397 * 119.99518 * 11 9 7 14 14 H 1.48505 * 109.47269 * 239.99745 * 11 9 7 15 15 S 1.65602 * 120.00126 * 95.00218 * 5 4 3 16 16 O 1.42099 * 104.27990 * 153.92520 * 15 5 4 17 17 O 1.42103 * 104.27523 * 26.06835 * 15 5 4 18 18 C 1.81398 * 104.44827 * 269.99924 * 15 5 4 19 19 C 1.53003 * 109.47230 * 179.97438 * 18 15 5 20 20 C 1.52994 * 109.47126 * 180.02562 * 19 18 15 21 21 C 1.54961 * 110.92578 * 71.54077 * 20 19 18 22 22 C 1.54270 * 104.16191 * 156.29427 * 21 20 19 23 23 C 1.53869 * 106.63967 * 336.44607 * 22 21 20 24 24 C 1.54268 * 106.60115 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.46942 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47290 * 299.99607 * 1 2 3 27 27 H 1.09003 * 109.47348 * 59.99754 * 1 2 3 28 28 H 1.09004 * 109.46835 * 59.99772 * 3 2 1 29 29 H 1.08992 * 109.47388 * 300.00215 * 3 2 1 30 30 H 1.08997 * 109.47261 * 305.00624 * 4 3 2 31 31 H 1.08997 * 109.46959 * 184.99987 * 4 3 2 32 32 H 1.09002 * 109.46941 * 35.00317 * 6 5 4 33 33 H 1.09006 * 109.46748 * 155.00046 * 6 5 4 34 34 H 0.96994 * 120.00550 * 180.02562 * 10 9 7 35 35 H 1.09001 * 109.47351 * 60.00205 * 18 15 5 36 36 H 1.09000 * 109.46852 * 299.99697 * 18 15 5 37 37 H 1.08995 * 109.46922 * 59.99750 * 19 18 15 38 38 H 1.09000 * 109.47141 * 299.99747 * 19 18 15 39 39 H 1.09001 * 110.67554 * 308.23161 * 20 19 18 40 40 H 1.08997 * 110.47708 * 37.64024 * 21 20 19 41 41 H 1.09002 * 110.53308 * 274.97416 * 21 20 19 42 42 H 1.09002 * 110.03399 * 217.13605 * 22 21 20 43 43 H 1.08995 * 110.02943 * 95.75505 * 22 21 20 44 44 H 1.08999 * 110.03405 * 119.26051 * 23 22 21 45 45 H 1.09001 * 110.03705 * 240.64196 * 23 22 21 46 46 H 1.08997 * 110.48788 * 142.28685 * 24 23 22 47 47 H 1.09000 * 110.48806 * 264.79985 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2510 6 6 4.0014 -0.8954 -1.3759 7 6 5.3000 -1.4248 -0.8241 8 1 6.0336 -0.7424 -0.4211 9 6 5.5519 -2.7804 -0.8348 10 7 4.6588 -3.6114 -1.3261 11 14 7.1612 -3.4367 -0.1502 12 1 7.9889 -2.3052 0.3395 13 1 6.8789 -4.3663 0.9728 14 1 7.8954 -4.1603 -1.2191 15 16 4.4473 1.5122 -2.5245 16 8 5.3436 0.6911 -3.2604 17 8 4.8892 2.7191 -1.9182 18 6 2.9229 1.7942 -3.4665 19 6 3.2299 2.6691 -4.6835 20 6 1.9441 2.9075 -5.4777 21 6 0.9935 3.8661 -4.7170 22 6 0.1069 4.4747 -5.8231 23 6 0.8999 4.3594 -7.1367 24 6 2.2418 3.6852 -6.7837 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6885 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8508 0.5685 0.8426 31 1 3.9784 2.1766 0.0902 32 1 3.1684 -1.3221 -0.8173 33 1 3.9136 -1.1716 -2.4268 34 1 4.8358 -4.5650 -1.3333 35 1 2.1921 2.2970 -2.8331 36 1 2.5190 0.8378 -3.7987 37 1 3.9609 2.1667 -5.3170 38 1 3.6336 3.6254 -4.3510 39 1 1.4458 1.9629 -5.6957 40 1 1.5628 4.6464 -4.2121 41 1 0.3850 3.3130 -4.0016 42 1 -0.0996 5.5219 -5.6023 43 1 -0.8273 3.9186 -5.9009 44 1 0.3509 3.7467 -7.8518 45 1 1.0776 5.3506 -7.5538 46 1 2.5442 2.9998 -7.5754 47 1 3.0135 4.4364 -6.6153 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590746298.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:29 Heat of formation + Delta-G solvation = -138.489974 kcal Electronic energy + Delta-G solvation = -26452.673437 eV Core-core repulsion = 22762.047719 eV Total energy + Delta-G solvation = -3690.625718 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.60942 -37.82216 -36.45975 -35.41892 -35.12201 -33.48943 -32.44684 -29.49710 -28.93413 -28.00734 -26.73122 -25.68395 -23.38065 -22.74489 -21.58367 -20.46498 -20.08405 -18.14482 -17.11617 -16.49130 -16.28329 -16.02765 -15.79831 -15.60671 -15.29877 -14.88867 -14.75321 -14.43396 -14.22725 -13.58866 -13.52067 -13.25569 -12.58167 -12.55566 -12.18280 -12.01309 -11.93840 -11.67186 -11.62224 -11.58201 -11.38654 -11.30828 -11.25592 -11.18819 -10.97697 -10.82456 -10.74637 -10.62738 -10.61707 -10.52255 -10.36705 -10.04221 -9.87965 -9.58036 -9.38205 -8.31461 -7.92397 -5.93579 -3.95425 0.87873 3.37614 3.38692 3.45619 3.52168 4.09868 4.27101 4.41505 4.44165 4.53874 4.58141 4.64622 4.84918 5.04332 5.14422 5.24357 5.29007 5.31662 5.39221 5.41451 5.41707 5.45874 5.48371 5.51124 5.55901 5.60834 5.66392 5.68551 5.74369 5.76810 5.86304 5.87540 5.92602 5.97029 6.04551 6.17302 6.27501 6.34399 6.58312 7.44500 7.46419 7.54026 7.81100 8.04855 8.36738 9.06674 9.67839 11.15192 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014450 B = 0.004015 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.220344 B = 6972.187887 C = 7845.110928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.040 3.960 4 C 0.121 3.879 5 N -0.977 5.977 6 C 0.256 3.744 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.060 3.940 10 N -0.897 5.897 11 Si 0.894 3.106 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.284 1.284 15 S 2.600 3.400 16 O -0.936 6.936 17 O -0.978 6.978 18 C -0.640 4.640 19 C -0.102 4.102 20 C -0.085 4.085 21 C -0.124 4.124 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.124 4.124 25 H 0.084 0.916 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.053 0.947 29 H 0.039 0.961 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.032 0.968 34 H 0.261 0.739 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.884 14.904 -5.543 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C -0.039 4.039 4 C -0.006 4.006 5 N -0.815 5.815 6 C 0.135 3.865 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.141 4.141 10 N -0.537 5.537 11 Si 0.722 3.278 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.210 1.210 15 S 2.691 3.309 16 O -0.927 6.927 17 O -0.968 6.968 18 C -0.767 4.767 19 C -0.141 4.141 20 C -0.104 4.104 21 C -0.161 4.161 22 C -0.163 4.163 23 C -0.162 4.162 24 C -0.162 4.162 25 H 0.102 0.898 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.140 0.860 36 H 0.149 0.851 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.939 14.830 -5.743 19.302 hybrid contribution -0.281 -0.415 0.260 0.564 sum -11.220 14.415 -5.483 19.072 Atomic orbital electron populations 1.22717 0.82463 1.02550 0.99009 1.88159 1.18303 1.26806 1.95072 1.23234 0.95947 0.85373 0.99352 1.21290 0.90382 0.99512 0.89392 1.57376 1.81828 1.18916 1.23420 1.19159 0.98204 0.71406 0.97763 1.21546 1.02621 0.92026 1.39757 0.92272 1.24901 0.96852 0.96815 0.95533 1.69937 1.34505 1.02941 1.46270 0.86505 0.83861 0.78858 0.78566 1.19732 1.21129 1.20986 1.05273 0.76882 0.73668 0.75047 1.93631 1.59066 1.66796 1.73160 1.93495 1.79680 1.48400 1.75243 1.30893 1.25058 1.09263 1.11519 1.21292 0.98829 0.99228 0.94734 1.22109 0.94974 0.98851 0.94472 1.22488 0.97580 0.98519 0.97517 1.22129 0.98576 1.00689 0.94893 1.22120 0.96177 1.00498 0.97426 1.22463 0.97360 0.99242 0.97149 0.89789 0.94735 0.94778 0.92910 0.94318 0.88578 0.88650 0.92770 0.94999 0.92988 0.85980 0.85050 0.90311 0.90655 0.90111 0.91335 0.91640 0.92018 0.92008 0.91971 0.92001 0.91442 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.37 -6.11 9.02 -35.23 -0.32 -6.43 16 3 C 0.04 0.57 6.28 37.16 0.23 0.80 16 4 C 0.12 2.09 6.10 -4.04 -0.02 2.06 16 5 N -0.98 -20.10 2.69 -115.66 -0.31 -20.41 16 6 C 0.26 6.49 4.85 -5.19 -0.03 6.47 16 7 C -0.52 -14.89 9.38 -34.44 -0.32 -15.21 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 11 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 15 S 2.60 49.61 5.37 -107.50 -0.58 49.03 16 16 O -0.94 -22.12 16.99 -57.54 -0.98 -23.10 16 17 O -0.98 -19.43 16.53 -57.54 -0.95 -20.38 16 18 C -0.64 -8.84 6.07 37.16 0.23 -8.61 16 19 C -0.10 -1.25 4.73 -26.73 -0.13 -1.38 16 20 C -0.08 -0.88 2.86 -88.59 -0.25 -1.13 16 21 C -0.12 -1.16 5.71 -25.03 -0.14 -1.30 16 22 C -0.13 -1.03 6.80 -25.61 -0.17 -1.20 16 23 C -0.12 -1.01 6.80 -25.62 -0.17 -1.18 16 24 C -0.12 -1.14 6.27 -25.07 -0.16 -1.29 16 25 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.04 0.48 6.85 -51.93 -0.36 0.13 16 30 H 0.10 1.76 8.11 -51.93 -0.42 1.34 16 31 H 0.10 1.48 6.82 -51.93 -0.35 1.13 16 32 H 0.05 1.42 6.60 -51.93 -0.34 1.08 16 33 H 0.03 0.86 7.61 -51.93 -0.40 0.46 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.12 1.42 6.37 -51.92 -0.33 1.09 16 36 H 0.13 1.78 8.14 -51.92 -0.42 1.36 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 0.87 8.00 -51.93 -0.42 0.45 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.64 7.95 -51.93 -0.41 0.23 16 41 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 LS Contribution 385.35 15.07 5.81 5.81 Total: -1.00 -34.62 385.35 -10.02 -44.64 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -8.48 Total: -1.68 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: 0.07 Total: -18.85 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.43 Total: -46.37 kcal Atomic # 8 Polarization: -47.67 SS G_CDS: -2.25 Total: -49.91 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Atomic # 16 Polarization: 49.61 SS G_CDS: -0.58 Total: 49.03 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.62 -10.02 -44.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590746298.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.846 kcal (2) G-P(sol) polarization free energy of solvation -34.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds