Wall clock time and date at job start Tue Mar 31 2020 12:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00003 * 2 1 4 4 C 1.52998 * 109.47316 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46611 * 65.00326 * 4 3 2 6 6 C 1.46500 * 119.99992 * 274.99798 * 5 4 3 7 7 C 1.50699 * 109.47110 * 275.00305 * 6 5 4 8 8 H 1.07996 * 120.00403 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99914 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00116 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00160 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47234 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47397 * 119.99518 * 11 9 7 14 14 H 1.48505 * 109.47269 * 239.99745 * 11 9 7 15 15 S 1.65602 * 120.00126 * 95.00218 * 5 4 3 16 16 O 1.42099 * 104.27990 * 153.92520 * 15 5 4 17 17 O 1.42103 * 104.27523 * 26.06835 * 15 5 4 18 18 C 1.81398 * 104.44827 * 269.99924 * 15 5 4 19 19 C 1.53003 * 109.47230 * 179.97438 * 18 15 5 20 20 C 1.52994 * 109.47126 * 180.02562 * 19 18 15 21 21 C 1.54961 * 110.92578 * 71.54077 * 20 19 18 22 22 C 1.54270 * 104.16191 * 156.29427 * 21 20 19 23 23 C 1.53869 * 106.63967 * 336.44607 * 22 21 20 24 24 C 1.54268 * 106.60115 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.46942 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47290 * 299.99607 * 1 2 3 27 27 H 1.09003 * 109.47348 * 59.99754 * 1 2 3 28 28 H 1.09004 * 109.46835 * 59.99772 * 3 2 1 29 29 H 1.08992 * 109.47388 * 300.00215 * 3 2 1 30 30 H 1.08997 * 109.47261 * 305.00624 * 4 3 2 31 31 H 1.08997 * 109.46959 * 184.99987 * 4 3 2 32 32 H 1.09002 * 109.46941 * 35.00317 * 6 5 4 33 33 H 1.09006 * 109.46748 * 155.00046 * 6 5 4 34 34 H 0.96994 * 120.00550 * 180.02562 * 10 9 7 35 35 H 1.09001 * 109.47351 * 60.00205 * 18 15 5 36 36 H 1.09000 * 109.46852 * 299.99697 * 18 15 5 37 37 H 1.08995 * 109.46922 * 59.99750 * 19 18 15 38 38 H 1.09000 * 109.47141 * 299.99747 * 19 18 15 39 39 H 1.09001 * 110.67554 * 308.23161 * 20 19 18 40 40 H 1.08997 * 110.47708 * 37.64024 * 21 20 19 41 41 H 1.09002 * 110.53308 * 274.97416 * 21 20 19 42 42 H 1.09002 * 110.03399 * 217.13605 * 22 21 20 43 43 H 1.08995 * 110.02943 * 95.75505 * 22 21 20 44 44 H 1.08999 * 110.03405 * 119.26051 * 23 22 21 45 45 H 1.09001 * 110.03705 * 240.64196 * 23 22 21 46 46 H 1.08997 * 110.48788 * 142.28685 * 24 23 22 47 47 H 1.09000 * 110.48806 * 264.79985 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2510 6 6 4.0014 -0.8954 -1.3759 7 6 5.3000 -1.4248 -0.8241 8 1 6.0336 -0.7424 -0.4211 9 6 5.5519 -2.7804 -0.8348 10 7 4.6588 -3.6114 -1.3261 11 14 7.1612 -3.4367 -0.1502 12 1 7.9889 -2.3052 0.3395 13 1 6.8789 -4.3663 0.9728 14 1 7.8954 -4.1603 -1.2191 15 16 4.4473 1.5122 -2.5245 16 8 5.3436 0.6911 -3.2604 17 8 4.8892 2.7191 -1.9182 18 6 2.9229 1.7942 -3.4665 19 6 3.2299 2.6691 -4.6835 20 6 1.9441 2.9075 -5.4777 21 6 0.9935 3.8661 -4.7170 22 6 0.1069 4.4747 -5.8231 23 6 0.8999 4.3594 -7.1367 24 6 2.2418 3.6852 -6.7837 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6885 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8508 0.5685 0.8426 31 1 3.9784 2.1766 0.0902 32 1 3.1684 -1.3221 -0.8173 33 1 3.9136 -1.1716 -2.4268 34 1 4.8358 -4.5650 -1.3333 35 1 2.1921 2.2970 -2.8331 36 1 2.5190 0.8378 -3.7987 37 1 3.9609 2.1667 -5.3170 38 1 3.6336 3.6254 -4.3510 39 1 1.4458 1.9629 -5.6957 40 1 1.5628 4.6464 -4.2121 41 1 0.3850 3.3130 -4.0016 42 1 -0.0996 5.5219 -5.6023 43 1 -0.8273 3.9186 -5.9009 44 1 0.3509 3.7467 -7.8518 45 1 1.0776 5.3506 -7.5538 46 1 2.5442 2.9998 -7.5754 47 1 3.0135 4.4364 -6.6153 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590746298.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:29 Heat of formation + Delta-G solvation = -161.896120 kcal Electronic energy + Delta-G solvation = -26453.688403 eV Core-core repulsion = 22762.047719 eV Total energy + Delta-G solvation = -3691.640684 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.35461 -39.03228 -38.07585 -37.02310 -36.73893 -34.54167 -34.44861 -31.00497 -29.61740 -28.88818 -28.42837 -26.93353 -24.57847 -24.39620 -22.97923 -21.13393 -20.87213 -19.70419 -18.70509 -18.39630 -17.60943 -17.26661 -17.00525 -16.78814 -16.50574 -16.38881 -15.79393 -15.70978 -15.46138 -14.99775 -14.45272 -14.37105 -14.11094 -13.79356 -13.54131 -13.51182 -13.29195 -13.16426 -13.06506 -12.87727 -12.73654 -12.61645 -12.48476 -12.47251 -12.25077 -12.06553 -11.96634 -11.91345 -11.81640 -11.64072 -11.50451 -11.41488 -11.23090 -11.18810 -10.55096 -10.42578 -9.63085 -8.13708 -6.23575 -0.60756 1.38323 1.40462 1.52249 1.84806 2.44277 2.98878 3.03709 3.17222 3.26557 3.47319 3.69165 3.71910 3.92673 3.96375 4.04458 4.21899 4.32696 4.46104 4.47741 4.51557 4.59087 4.60635 4.61740 4.66449 4.69758 4.76471 4.85985 4.89324 4.90429 4.95759 4.99739 5.09330 5.11577 5.15072 5.27350 5.36154 5.40857 5.52015 5.54129 5.62842 5.77198 6.01316 6.21861 6.46478 6.85113 7.43222 8.93820 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014450 B = 0.004015 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.220344 B = 6972.187887 C = 7845.110928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.042 3.958 4 C 0.112 3.888 5 N -0.988 5.988 6 C 0.277 3.723 7 C -0.541 4.541 8 H 0.046 0.954 9 C 0.010 3.990 10 N -0.925 5.925 11 Si 0.953 3.047 12 H -0.272 1.272 13 H -0.271 1.271 14 H -0.279 1.279 15 S 2.592 3.408 16 O -0.994 6.994 17 O -0.991 6.991 18 C -0.603 4.603 19 C -0.111 4.111 20 C -0.084 4.084 21 C -0.127 4.127 22 C -0.124 4.124 23 C -0.124 4.124 24 C -0.127 4.127 25 H 0.080 0.920 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.042 0.958 33 H 0.009 0.991 34 H 0.265 0.735 35 H 0.155 0.845 36 H 0.139 0.861 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.555 16.538 -5.725 22.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C -0.036 4.036 4 C -0.014 4.014 5 N -0.825 5.825 6 C 0.154 3.846 7 C -0.581 4.581 8 H 0.065 0.935 9 C -0.189 4.189 10 N -0.565 5.565 11 Si 0.779 3.221 12 H -0.197 1.197 13 H -0.196 1.196 14 H -0.205 1.205 15 S 2.691 3.309 16 O -0.985 6.985 17 O -0.982 6.982 18 C -0.736 4.736 19 C -0.150 4.150 20 C -0.104 4.104 21 C -0.164 4.164 22 C -0.162 4.162 23 C -0.161 4.161 24 C -0.165 4.165 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.129 0.871 32 H 0.060 0.940 33 H 0.027 0.973 34 H 0.074 0.926 35 H 0.173 0.827 36 H 0.157 0.843 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.572 16.470 -5.868 21.534 hybrid contribution 0.178 -0.829 0.268 0.889 sum -12.394 15.641 -5.599 20.727 Atomic orbital electron populations 1.22884 0.80362 1.03036 1.00883 1.88096 1.20750 1.28328 1.95474 1.23233 0.93322 0.85102 1.01951 1.21504 0.93206 0.99354 0.87310 1.57199 1.82615 1.16996 1.25650 1.18581 0.96154 0.74212 0.95667 1.21901 1.03798 0.92413 1.39958 0.93538 1.25703 1.00150 0.97165 0.95887 1.70025 1.36120 1.03300 1.47080 0.85583 0.79915 0.78314 0.78321 1.19665 1.19596 1.20520 1.05234 0.78232 0.72763 0.74713 1.93558 1.62782 1.68158 1.73978 1.93465 1.81060 1.47936 1.75711 1.30535 1.20889 1.10654 1.11519 1.21475 1.00186 0.99201 0.94110 1.22107 0.93920 0.99425 0.94959 1.22542 0.97576 0.98384 0.97932 1.22134 0.98476 1.01237 0.94352 1.22127 0.95463 1.00921 0.97631 1.22495 0.98192 0.99280 0.96528 0.90170 0.92601 0.93031 0.89723 0.92026 0.90735 0.87123 0.94030 0.97265 0.92631 0.82742 0.84292 0.90874 0.89657 0.90163 0.91128 0.91111 0.91159 0.91565 0.91591 0.91166 0.91389 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 11.01 113.37 1.25 1.80 16 2 O -0.41 -13.21 9.02 -148.98 -1.34 -14.55 16 3 C 0.04 1.11 6.28 71.98 0.45 1.56 16 4 C 0.11 3.84 6.10 86.38 0.53 4.36 16 5 N -0.99 -41.30 2.69 -519.84 -1.40 -42.69 16 6 C 0.28 14.57 4.85 85.63 0.42 14.98 16 7 C -0.54 -32.07 9.38 25.60 0.24 -31.83 16 8 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 9 C 0.01 0.57 5.46 84.66 0.46 1.03 16 10 N -0.92 -56.19 13.29 21.45 0.28 -55.90 16 11 Si 0.95 46.57 29.54 68.60 2.03 48.60 16 12 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 13 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 14 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 15 S 2.59 99.54 5.37 -56.49 -0.30 99.24 16 16 O -0.99 -48.84 16.99 -127.65 -2.17 -51.01 16 17 O -0.99 -39.09 16.53 -127.65 -2.11 -41.20 16 18 C -0.60 -15.51 6.07 71.98 0.44 -15.08 16 19 C -0.11 -2.51 4.73 30.59 0.14 -2.37 16 20 C -0.08 -1.54 2.86 -9.48 -0.03 -1.57 16 21 C -0.13 -1.97 5.71 31.70 0.18 -1.79 16 22 C -0.12 -1.65 6.80 31.32 0.21 -1.44 16 23 C -0.12 -1.67 6.80 31.32 0.21 -1.46 16 24 C -0.13 -2.05 6.27 31.67 0.20 -1.85 16 25 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.06 1.32 6.85 -2.39 -0.02 1.30 16 30 H 0.07 2.81 8.11 -2.39 -0.02 2.80 16 31 H 0.11 3.36 6.82 -2.39 -0.02 3.35 16 32 H 0.04 2.27 6.60 -2.39 -0.02 2.26 16 33 H 0.01 0.53 7.61 -2.38 -0.02 0.51 16 34 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.15 3.03 6.37 -2.39 -0.02 3.01 16 36 H 0.14 3.53 8.14 -2.39 -0.02 3.51 16 37 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.08 1.78 8.00 -2.39 -0.02 1.76 16 39 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.07 1.07 7.95 -2.39 -0.02 1.05 16 41 H 0.07 1.02 8.10 -2.39 -0.02 1.00 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 46 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.07 1.10 8.05 -2.39 -0.02 1.08 16 Total: -1.00 -77.02 385.35 0.61 -76.41 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.92 Total: 14.74 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 4.71 Total: -33.62 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -1.11 Total: -98.60 kcal Atomic # 8 Polarization: -101.15 SS G_CDS: -5.62 Total: -106.77 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Atomic # 16 Polarization: 99.54 SS G_CDS: -0.30 Total: 99.24 kcal Total: -77.02 0.61 -76.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590746298.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.487 kcal (2) G-P(sol) polarization free energy of solvation -77.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds