Wall clock time and date at job start Tue Mar 31 2020 12:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42902 * 114.00262 * 2 1 4 4 C 1.52998 * 109.47251 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46893 * 65.00769 * 4 3 2 6 6 C 1.46503 * 120.00075 * 84.47480 * 5 4 3 7 7 C 1.50689 * 109.47117 * 91.78779 * 6 5 4 8 8 H 1.07999 * 120.00325 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00041 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00085 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00232 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47032 * 90.00304 * 11 9 7 13 13 H 1.48506 * 109.47391 * 209.99979 * 11 9 7 14 14 H 1.48503 * 109.47369 * 330.00230 * 11 9 7 15 15 C 1.34770 * 119.99796 * 264.47270 * 5 4 3 16 16 O 1.21280 * 120.00362 * 5.01055 * 15 5 4 17 17 C 1.50709 * 120.00141 * 185.01361 * 15 5 4 18 18 H 1.08995 * 109.68021 * 41.57701 * 17 15 5 19 19 C 1.53406 * 109.67983 * 281.05382 * 17 15 5 20 20 C 1.53069 * 108.30351 * 175.56854 * 19 17 15 21 21 C 1.50772 * 109.68946 * 48.17050 * 20 19 17 22 22 C 1.38505 * 118.76652 * 162.22404 * 21 20 19 23 23 C 1.38098 * 120.31421 * 179.83826 * 22 21 20 24 24 C 1.38290 * 119.98864 * 359.97438 * 23 22 21 25 25 C 1.37963 * 119.95423 * 0.08915 * 24 23 22 26 26 C 1.38366 * 121.40318 * 342.20593 * 21 20 19 27 27 O 1.35846 * 121.80988 * 0.50110 * 26 21 20 28 28 H 1.08996 * 109.47534 * 59.99606 * 1 2 3 29 29 H 1.09005 * 109.47363 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47267 * 299.99462 * 1 2 3 31 31 H 1.09011 * 109.46351 * 60.00430 * 3 2 1 32 32 H 1.09001 * 109.47148 * 300.01014 * 3 2 1 33 33 H 1.08994 * 109.47662 * 305.00179 * 4 3 2 34 34 H 1.09004 * 109.47068 * 185.00246 * 4 3 2 35 35 H 1.09000 * 109.46748 * 211.78887 * 6 5 4 36 36 H 1.09001 * 109.47127 * 331.78538 * 6 5 4 37 37 H 0.96993 * 120.00381 * 179.97438 * 10 9 7 38 38 H 1.09003 * 109.70218 * 295.26938 * 19 17 15 39 39 H 1.09001 * 109.70264 * 55.86675 * 19 17 15 40 40 H 1.09008 * 109.43444 * 168.23611 * 20 19 17 41 41 H 1.09002 * 109.43983 * 288.14303 * 20 19 17 42 42 H 1.08002 * 119.84098 * 359.82352 * 22 21 20 43 43 H 1.08009 * 120.00596 * 179.97438 * 23 22 21 44 44 H 1.07998 * 120.02341 * 180.10545 * 24 23 22 45 45 H 1.08001 * 119.89284 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.1696 1.3876 -2.4492 7 6 5.6023 1.8503 -2.5135 8 1 6.2986 1.5608 -1.7404 9 6 6.0243 2.6434 -3.5595 10 7 5.1765 2.9957 -4.5013 11 14 7.8000 3.2177 -3.6389 12 1 8.6080 2.2251 -4.3920 13 1 7.8648 4.5325 -4.3263 14 1 8.3389 3.3521 -2.2616 15 6 4.2020 -0.7630 -1.3042 16 8 3.9549 -1.4581 -0.3415 17 6 4.7623 -1.3840 -2.5579 18 1 5.5467 -0.7459 -2.9646 19 6 3.6444 -1.5533 -3.5947 20 6 4.2660 -2.0809 -4.8901 21 6 5.1707 -3.2469 -4.5813 22 6 5.5357 -4.0983 -5.6109 23 6 6.3657 -5.1743 -5.3646 24 6 6.8368 -5.4052 -4.0851 25 6 6.4755 -4.5612 -3.0553 26 6 5.6376 -3.4773 -3.2993 27 8 5.2975 -2.6739 -2.2581 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.6886 1.8463 0.8902 32 1 1.6885 1.8465 -0.8899 33 1 3.8515 0.5682 0.8408 34 1 3.9785 2.1765 0.0890 35 1 3.9378 0.7988 -3.3367 36 1 3.5096 2.2539 -2.4052 37 1 5.4733 3.5539 -5.2368 38 1 2.9055 -2.2646 -3.2255 39 1 3.1675 -0.5911 -3.7814 40 1 3.4749 -2.4050 -5.5664 41 1 4.8456 -1.2884 -5.3634 42 1 5.1693 -3.9201 -6.6111 43 1 6.6468 -5.8353 -6.1712 44 1 7.4872 -6.2454 -3.8922 45 1 6.8443 -4.7422 -2.0565 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591063808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:06 Heat of formation + Delta-G solvation = -92.915783 kcal Electronic energy + Delta-G solvation = -27937.153305 eV Core-core repulsion = 24113.059881 eV Total energy + Delta-G solvation = -3824.093424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.58180 -38.99912 -37.49597 -36.80882 -35.04622 -33.96669 -32.70861 -30.94877 -29.97187 -29.45840 -27.14764 -26.37056 -25.55789 -23.62325 -23.05940 -22.30760 -22.24068 -19.88597 -18.58391 -17.58693 -16.87189 -16.48547 -16.35414 -15.96581 -15.71547 -15.06742 -15.00389 -14.68301 -14.56134 -14.39117 -14.00432 -13.88266 -13.45930 -13.26613 -12.95125 -12.71324 -12.39842 -12.24237 -12.23128 -11.86659 -11.59418 -11.54211 -11.34739 -11.23582 -11.07127 -10.93887 -10.79560 -10.71135 -10.50174 -10.19501 -10.10508 -9.78570 -9.36378 -8.88372 -8.61392 -8.59947 -7.87254 -7.74991 -6.26336 -4.34408 1.49728 1.63758 3.09742 3.18761 3.26440 3.30699 3.46728 3.92378 4.10501 4.21673 4.34757 4.88281 4.93023 5.01694 5.06628 5.17023 5.22834 5.35930 5.43211 5.45132 5.45881 5.59762 5.62188 5.65128 5.71629 5.73795 5.77858 5.80908 5.94938 6.05342 6.10268 6.18369 6.20421 6.34622 6.41741 6.49446 6.65686 6.68954 6.70636 6.96973 7.11470 7.40240 7.54464 7.69045 7.79376 7.96527 8.27351 8.72386 9.01663 9.34653 10.79709 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.008549 B = 0.005799 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3274.558955 B = 4827.091934 C = 7062.846396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.045 3.955 4 C 0.124 3.876 5 N -0.590 5.590 6 C 0.229 3.771 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.068 3.932 10 N -0.889 5.889 11 Si 0.894 3.106 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.532 3.468 16 O -0.537 6.537 17 C 0.077 3.923 18 H 0.115 0.885 19 C -0.145 4.145 20 C -0.076 4.076 21 C -0.158 4.158 22 C -0.085 4.085 23 C -0.162 4.162 24 C -0.092 4.092 25 C -0.152 4.152 26 C 0.144 3.856 27 O -0.294 6.294 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.034 0.966 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.044 0.956 36 H 0.037 0.963 37 H 0.266 0.734 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.124 0.876 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.967 -8.107 -0.361 9.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.290 6.290 3 C -0.033 4.033 4 C 0.000 4.000 5 N -0.323 5.323 6 C 0.109 3.891 7 C -0.582 4.582 8 H 0.081 0.919 9 C -0.136 4.136 10 N -0.527 5.527 11 Si 0.721 3.279 12 H -0.204 1.204 13 H -0.210 1.210 14 H -0.197 1.197 15 C 0.318 3.682 16 O -0.414 6.414 17 C 0.018 3.982 18 H 0.133 0.867 19 C -0.183 4.183 20 C -0.113 4.113 21 C -0.159 4.159 22 C -0.103 4.103 23 C -0.180 4.180 24 C -0.110 4.110 25 C -0.170 4.170 26 C 0.098 3.902 27 O -0.207 6.207 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.142 0.858 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.995 -8.538 0.187 9.428 hybrid contribution 0.691 0.946 -0.471 1.262 sum -3.304 -7.592 -0.284 8.285 Atomic orbital electron populations 1.22673 0.82427 1.02145 0.99260 1.88108 1.18322 1.27346 1.95187 1.23056 0.95335 0.85045 0.99898 1.21339 0.91167 0.99391 0.88073 1.47912 1.65324 1.06408 1.12644 1.19620 0.97147 0.90732 0.81597 1.21528 0.95336 1.32206 1.09110 0.91917 1.24924 0.97876 0.95520 0.95231 1.69908 1.34718 1.36237 1.11828 0.86549 0.84590 0.78247 0.78497 1.20367 1.21006 1.19687 1.19599 0.78157 0.82541 0.87936 1.90639 1.51787 1.61345 1.37667 1.22411 0.97835 0.82950 0.94991 0.86712 1.22194 0.97674 1.03730 0.94707 1.20500 0.97757 0.95425 0.97619 1.19939 1.02627 1.00206 0.93115 1.20863 0.97288 0.94098 0.98084 1.20926 1.00960 0.99154 0.96951 1.20840 0.99173 0.98546 0.92464 1.20584 1.00007 0.95981 1.00469 1.18800 0.93494 0.91360 0.86555 1.85999 1.77454 1.26561 1.30704 0.94560 0.90197 0.94723 0.93183 0.93032 0.89881 0.88803 0.93875 0.94447 0.92433 0.90707 0.88269 0.90073 0.89470 0.86042 0.86298 0.85817 0.85369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.62 9.95 -35.39 -0.35 -6.97 16 3 C 0.04 0.71 6.28 37.16 0.23 0.95 16 4 C 0.12 2.25 5.82 -4.04 -0.02 2.22 16 5 N -0.59 -12.34 2.42 -175.06 -0.42 -12.76 16 6 C 0.23 5.15 4.82 -5.20 -0.03 5.12 16 7 C -0.54 -13.52 8.52 -34.44 -0.29 -13.81 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -23.31 13.29 55.43 0.74 -22.58 16 11 Si 0.89 20.04 29.54 -169.99 -5.02 15.02 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 15 C 0.53 11.74 6.74 -10.98 -0.07 11.66 16 16 O -0.54 -13.13 15.67 -15.71 -0.25 -13.38 16 17 C 0.08 1.57 2.37 -27.67 -0.07 1.51 16 18 H 0.12 2.50 6.81 -51.93 -0.35 2.15 16 19 C -0.15 -2.56 5.16 -26.49 -0.14 -2.70 16 20 C -0.08 -1.18 5.86 -27.81 -0.16 -1.34 16 21 C -0.16 -2.56 5.75 -104.44 -0.60 -3.16 16 22 C -0.09 -1.16 9.67 -39.53 -0.38 -1.55 16 23 C -0.16 -2.02 10.04 -39.61 -0.40 -2.42 16 24 C -0.09 -1.19 10.04 -39.66 -0.40 -1.59 16 25 C -0.15 -2.36 9.94 -39.34 -0.39 -2.75 16 26 C 0.14 2.59 6.47 -39.20 -0.25 2.33 16 27 O -0.29 -6.09 9.52 -38.38 -0.37 -6.46 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.57 7.33 -51.93 -0.38 1.18 16 34 H 0.09 1.58 8.11 -51.93 -0.42 1.16 16 35 H 0.04 0.99 4.63 -51.93 -0.24 0.75 16 36 H 0.04 0.87 8.06 -51.93 -0.42 0.46 16 37 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.10 1.77 5.89 -51.93 -0.31 1.46 16 40 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 41 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 43 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 44 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 45 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 369.98 15.07 5.58 5.58 Total: -1.00 -30.29 369.98 -8.79 -39.09 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.74 Total: 4.82 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -1.96 Total: -2.35 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.31 Total: -35.34 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.96 Total: -26.81 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.29 -8.79 -39.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591063808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.830 kcal (2) G-P(sol) polarization free energy of solvation -30.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds