Wall clock time and date at job start Tue Mar 31 2020 12:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42902 * 114.00262 * 2 1 4 4 C 1.52998 * 109.47251 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46893 * 65.00769 * 4 3 2 6 6 C 1.46503 * 120.00075 * 84.47480 * 5 4 3 7 7 C 1.50689 * 109.47117 * 91.78779 * 6 5 4 8 8 H 1.07999 * 120.00325 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00041 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00085 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00232 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47032 * 90.00304 * 11 9 7 13 13 H 1.48506 * 109.47391 * 209.99979 * 11 9 7 14 14 H 1.48503 * 109.47369 * 330.00230 * 11 9 7 15 15 C 1.34770 * 119.99796 * 264.47270 * 5 4 3 16 16 O 1.21280 * 120.00362 * 5.01055 * 15 5 4 17 17 C 1.50709 * 120.00141 * 185.01361 * 15 5 4 18 18 H 1.08995 * 109.68021 * 41.57701 * 17 15 5 19 19 C 1.53406 * 109.67983 * 281.05382 * 17 15 5 20 20 C 1.53069 * 108.30351 * 175.56854 * 19 17 15 21 21 C 1.50772 * 109.68946 * 48.17050 * 20 19 17 22 22 C 1.38505 * 118.76652 * 162.22404 * 21 20 19 23 23 C 1.38098 * 120.31421 * 179.83826 * 22 21 20 24 24 C 1.38290 * 119.98864 * 359.97438 * 23 22 21 25 25 C 1.37963 * 119.95423 * 0.08915 * 24 23 22 26 26 C 1.38366 * 121.40318 * 342.20593 * 21 20 19 27 27 O 1.35846 * 121.80988 * 0.50110 * 26 21 20 28 28 H 1.08996 * 109.47534 * 59.99606 * 1 2 3 29 29 H 1.09005 * 109.47363 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47267 * 299.99462 * 1 2 3 31 31 H 1.09011 * 109.46351 * 60.00430 * 3 2 1 32 32 H 1.09001 * 109.47148 * 300.01014 * 3 2 1 33 33 H 1.08994 * 109.47662 * 305.00179 * 4 3 2 34 34 H 1.09004 * 109.47068 * 185.00246 * 4 3 2 35 35 H 1.09000 * 109.46748 * 211.78887 * 6 5 4 36 36 H 1.09001 * 109.47127 * 331.78538 * 6 5 4 37 37 H 0.96993 * 120.00381 * 179.97438 * 10 9 7 38 38 H 1.09003 * 109.70218 * 295.26938 * 19 17 15 39 39 H 1.09001 * 109.70264 * 55.86675 * 19 17 15 40 40 H 1.09008 * 109.43444 * 168.23611 * 20 19 17 41 41 H 1.09002 * 109.43983 * 288.14303 * 20 19 17 42 42 H 1.08002 * 119.84098 * 359.82352 * 22 21 20 43 43 H 1.08009 * 120.00596 * 179.97438 * 23 22 21 44 44 H 1.07998 * 120.02341 * 180.10545 * 24 23 22 45 45 H 1.08001 * 119.89284 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.1696 1.3876 -2.4492 7 6 5.6023 1.8503 -2.5135 8 1 6.2986 1.5608 -1.7404 9 6 6.0243 2.6434 -3.5595 10 7 5.1765 2.9957 -4.5013 11 14 7.8000 3.2177 -3.6389 12 1 8.6080 2.2251 -4.3920 13 1 7.8648 4.5325 -4.3263 14 1 8.3389 3.3521 -2.2616 15 6 4.2020 -0.7630 -1.3042 16 8 3.9549 -1.4581 -0.3415 17 6 4.7623 -1.3840 -2.5579 18 1 5.5467 -0.7459 -2.9646 19 6 3.6444 -1.5533 -3.5947 20 6 4.2660 -2.0809 -4.8901 21 6 5.1707 -3.2469 -4.5813 22 6 5.5357 -4.0983 -5.6109 23 6 6.3657 -5.1743 -5.3646 24 6 6.8368 -5.4052 -4.0851 25 6 6.4755 -4.5612 -3.0553 26 6 5.6376 -3.4773 -3.2993 27 8 5.2975 -2.6739 -2.2581 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.6886 1.8463 0.8902 32 1 1.6885 1.8465 -0.8899 33 1 3.8515 0.5682 0.8408 34 1 3.9785 2.1765 0.0890 35 1 3.9378 0.7988 -3.3367 36 1 3.5096 2.2539 -2.4052 37 1 5.4733 3.5539 -5.2368 38 1 2.9055 -2.2646 -3.2255 39 1 3.1675 -0.5911 -3.7814 40 1 3.4749 -2.4050 -5.5664 41 1 4.8456 -1.2884 -5.3634 42 1 5.1693 -3.9201 -6.6111 43 1 6.6468 -5.8353 -6.1712 44 1 7.4872 -6.2454 -3.8922 45 1 6.8443 -4.7422 -2.0565 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591063808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:05 Heat of formation + Delta-G solvation = -109.201972 kcal Electronic energy + Delta-G solvation = -27937.859527 eV Core-core repulsion = 24113.059881 eV Total energy + Delta-G solvation = -3824.799646 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.98708 -40.52689 -38.77382 -38.14279 -36.80172 -35.29552 -34.60470 -32.31710 -31.12192 -30.85003 -28.97710 -27.61263 -26.84382 -25.15419 -24.66477 -23.73414 -23.39024 -21.22058 -20.16660 -18.97664 -18.69145 -18.05648 -17.81018 -17.28723 -17.08839 -16.50425 -16.48647 -16.16526 -15.93268 -15.80734 -15.29802 -15.15629 -14.89412 -14.65807 -14.40002 -14.14825 -14.02753 -13.68966 -13.49418 -13.32020 -13.10598 -13.01079 -12.79802 -12.63110 -12.54417 -12.41813 -12.24596 -12.06601 -11.94809 -11.91476 -11.69618 -11.39829 -10.72169 -10.58383 -10.46210 -9.71402 -9.50015 -9.10624 -8.21962 -6.35694 0.39181 0.48694 1.39446 1.42526 1.48771 1.54962 1.84195 2.37698 2.67764 2.85505 2.96927 3.08027 3.50676 3.57009 3.78335 3.82941 4.02082 4.13960 4.19908 4.23226 4.26738 4.36484 4.40440 4.50653 4.52476 4.54151 4.61281 4.61521 4.63940 4.76069 4.81687 4.89620 4.92430 4.95129 5.00254 5.14039 5.26042 5.39082 5.55148 5.60272 5.63537 5.78919 5.92496 6.03411 6.32416 6.42481 6.52363 6.77485 7.25592 7.38402 8.83056 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.008549 B = 0.005799 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3274.558955 B = 4827.091934 C = 7062.846396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.051 3.949 4 C 0.115 3.885 5 N -0.588 5.588 6 C 0.243 3.757 7 C -0.551 4.551 8 H 0.049 0.951 9 C 0.031 3.969 10 N -0.911 5.911 11 Si 0.947 3.053 12 H -0.277 1.277 13 H -0.277 1.277 14 H -0.273 1.273 15 C 0.526 3.474 16 O -0.567 6.567 17 C 0.082 3.918 18 H 0.093 0.907 19 C -0.136 4.136 20 C -0.070 4.070 21 C -0.173 4.173 22 C -0.087 4.087 23 C -0.151 4.151 24 C -0.086 4.086 25 C -0.168 4.168 26 C 0.099 3.901 27 O -0.321 6.321 28 H 0.044 0.956 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.040 0.960 36 H 0.031 0.969 37 H 0.269 0.731 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.078 0.922 42 H 0.150 0.850 43 H 0.158 0.842 44 H 0.159 0.841 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.755 -9.030 -1.883 9.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.328 6.328 3 C -0.027 4.027 4 C -0.007 4.007 5 N -0.320 5.320 6 C 0.123 3.877 7 C -0.590 4.590 8 H 0.067 0.933 9 C -0.170 4.170 10 N -0.550 5.550 11 Si 0.772 3.228 12 H -0.203 1.203 13 H -0.203 1.203 14 H -0.198 1.198 15 C 0.313 3.687 16 O -0.447 6.447 17 C 0.023 3.977 18 H 0.110 0.890 19 C -0.174 4.174 20 C -0.107 4.107 21 C -0.174 4.174 22 C -0.105 4.105 23 C -0.169 4.169 24 C -0.104 4.104 25 C -0.186 4.186 26 C 0.055 3.945 27 O -0.235 6.235 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.129 0.871 41 H 0.097 0.903 42 H 0.168 0.832 43 H 0.175 0.825 44 H 0.176 0.824 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.792 -9.449 -1.336 10.269 hybrid contribution 0.647 1.138 -0.004 1.309 sum -3.145 -8.311 -1.340 8.987 Atomic orbital electron populations 1.22861 0.80198 1.03103 1.00726 1.88057 1.20902 1.28320 1.95493 1.22992 0.93382 0.84887 1.01396 1.21574 0.93314 0.99399 0.86440 1.47943 1.64850 1.06054 1.13126 1.19349 0.95840 0.90367 0.82153 1.21645 0.96164 1.32299 1.08858 0.93271 1.25500 1.00943 0.95610 0.94950 1.69971 1.36052 1.36729 1.12226 0.85726 0.80790 0.77962 0.78278 1.20318 1.20250 1.19792 1.19963 0.77813 0.82742 0.88181 1.90601 1.53370 1.61949 1.38768 1.22201 0.97849 0.83035 0.94599 0.88959 1.22109 0.96750 1.03357 0.95188 1.20490 0.98396 0.95211 0.96609 1.20110 1.03127 1.01003 0.93184 1.21239 0.97035 0.93665 0.98552 1.21427 0.99099 0.98650 0.97688 1.21270 0.98688 0.98513 0.91925 1.20838 1.00099 0.96117 1.01564 1.19265 0.95880 0.92372 0.87015 1.85950 1.78381 1.26621 1.32592 0.93740 0.89616 0.92491 0.89877 0.93104 0.90947 0.87664 0.94223 0.95103 0.92173 0.91010 0.88874 0.87144 0.90334 0.83244 0.82484 0.82388 0.85518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.94 16 2 O -0.41 -14.57 9.95 -148.83 -1.48 -16.06 16 3 C 0.05 1.61 6.28 71.98 0.45 2.06 16 4 C 0.12 4.27 5.82 86.38 0.50 4.78 16 5 N -0.59 -25.49 2.42 -826.17 -2.00 -27.48 16 6 C 0.24 11.26 4.82 85.63 0.41 11.68 16 7 C -0.55 -28.02 8.52 25.60 0.22 -27.81 16 8 H 0.05 2.59 7.81 -2.91 -0.02 2.57 16 9 C 0.03 1.60 5.46 84.66 0.46 2.06 16 10 N -0.91 -47.84 13.29 21.45 0.28 -47.56 16 11 Si 0.95 41.10 29.54 68.60 2.03 43.12 16 12 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 13 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 14 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 15 C 0.53 24.37 6.74 87.66 0.59 24.96 16 16 O -0.57 -29.06 15.67 17.31 0.27 -28.79 16 17 C 0.08 3.55 2.37 29.99 0.07 3.62 16 18 H 0.09 4.30 6.81 -2.39 -0.02 4.28 16 19 C -0.14 -4.97 5.16 30.75 0.16 -4.81 16 20 C -0.07 -2.17 5.86 29.89 0.18 -1.99 16 21 C -0.17 -5.51 5.75 -19.75 -0.11 -5.62 16 22 C -0.09 -2.13 9.67 22.30 0.22 -1.92 16 23 C -0.15 -3.18 10.04 22.25 0.22 -2.96 16 24 C -0.09 -1.99 10.04 22.22 0.22 -1.77 16 25 C -0.17 -5.18 9.94 22.42 0.22 -4.96 16 26 C 0.10 3.65 6.47 22.52 0.15 3.79 16 27 O -0.32 -14.04 9.52 -73.53 -0.70 -14.74 16 28 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 2.83 7.33 -2.39 -0.02 2.81 16 34 H 0.11 3.58 8.11 -2.38 -0.02 3.56 16 35 H 0.04 1.88 4.63 -2.39 -0.01 1.87 16 36 H 0.03 1.47 8.06 -2.39 -0.02 1.45 16 37 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 38 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.09 3.44 5.89 -2.39 -0.01 3.43 16 40 H 0.11 2.69 8.14 -2.38 -0.02 2.68 16 41 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 43 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 44 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 45 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -67.02 369.98 4.59 -62.43 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.98 Total: 26.02 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 5.21 Total: 3.05 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -1.71 Total: -75.04 kcal Atomic # 8 Polarization: -57.67 SS G_CDS: -1.91 Total: -59.58 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.12 kcal Total: -67.02 4.59 -62.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591063808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.775 kcal (2) G-P(sol) polarization free energy of solvation -67.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds