Wall clock time and date at job start Tue Mar 31 2020 12:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34718 * 116.99858 * 2 1 4 4 O 1.21474 * 119.99795 * 0.02562 * 3 2 1 5 5 C 1.47721 * 120.00256 * 179.97438 * 3 2 1 6 6 C 1.39647 * 120.14722 * 5.60726 * 5 3 2 7 7 C 1.37928 * 119.84752 * 180.02562 * 6 5 3 8 8 C 1.38385 * 120.14928 * 359.97438 * 7 6 5 9 9 C 1.38348 * 120.30479 * 359.75389 * 8 7 6 10 10 C 1.37971 * 120.14569 * 0.50653 * 9 8 7 11 11 C 1.50700 * 120.07224 * 179.77217 * 10 9 8 12 12 C 1.52999 * 109.46666 * 257.87534 * 11 10 9 13 13 N 1.46906 * 109.46977 * 180.02562 * 12 11 10 14 14 C 1.48721 * 111.01457 * 54.48826 * 13 12 11 15 15 C 1.54383 * 104.51663 * 158.96667 * 14 13 12 16 16 C 1.54259 * 105.14970 * 336.27191 * 15 14 13 17 17 O 1.42891 * 110.32535 * 118.94526 * 16 15 14 18 18 C 1.50708 * 110.32176 * 241.05208 * 16 15 14 19 19 H 1.07996 * 119.99678 * 123.41998 * 18 16 15 20 20 C 1.37876 * 120.00039 * 303.42194 * 18 16 15 21 21 N 1.31516 * 119.99634 * 3.87437 * 20 18 16 22 22 Si 1.86799 * 119.99973 * 183.87591 * 20 18 16 23 23 H 1.48498 * 109.46734 * 84.99514 * 22 20 18 24 24 H 1.48502 * 109.46950 * 204.99122 * 22 20 18 25 25 H 1.48495 * 109.47004 * 324.99337 * 22 20 18 26 26 C 1.48565 * 111.00007 * 169.99630 * 13 12 11 27 27 H 1.09001 * 109.47177 * 299.99864 * 1 2 3 28 28 H 1.08995 * 109.47167 * 60.00222 * 1 2 3 29 29 H 1.09004 * 109.46862 * 180.02562 * 1 2 3 30 30 H 1.07999 * 120.08084 * 0.03892 * 6 5 3 31 31 H 1.08007 * 119.92180 * 179.97438 * 7 6 5 32 32 H 1.08005 * 119.84976 * 179.97438 * 8 7 6 33 33 H 1.07995 * 119.92748 * 180.24995 * 9 8 7 34 34 H 1.08996 * 109.47133 * 137.87670 * 11 10 9 35 35 H 1.08997 * 109.47363 * 17.87204 * 11 10 9 36 36 H 1.08998 * 109.47679 * 60.00469 * 12 11 10 37 37 H 1.09005 * 109.47412 * 299.99485 * 12 11 10 38 38 H 1.09008 * 110.38722 * 40.24599 * 14 13 12 39 39 H 1.09001 * 110.51012 * 277.75243 * 14 13 12 40 40 H 1.09003 * 110.32164 * 217.31899 * 15 14 13 41 41 H 1.08997 * 110.32150 * 95.21446 * 15 14 13 42 42 H 0.96701 * 114.00317 * 64.74501 * 17 16 15 43 43 H 0.97001 * 119.99715 * 179.97438 * 21 20 18 44 44 H 1.08999 * 110.40376 * 82.18394 * 26 13 12 45 45 H 1.08996 * 110.40965 * 319.74048 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4019 2.2191 0.0005 5 6 3.5388 1.2778 0.0006 6 6 4.3022 0.1144 -0.1169 7 6 5.6792 0.1938 -0.1151 8 6 6.3043 1.4227 0.0022 9 6 5.5541 2.5798 0.1132 10 6 4.1760 2.5143 0.1183 11 6 3.3605 3.7753 0.2445 12 6 2.8412 3.9053 1.6778 13 7 2.0457 5.1342 1.8008 14 6 0.9620 5.1721 0.7829 15 6 -0.0689 6.1703 1.3522 16 6 0.1725 6.1741 2.8758 17 8 0.5487 7.4806 3.3155 18 6 -1.0649 5.7142 3.6029 19 1 -1.0138 4.8711 4.2758 20 6 -2.2622 6.3698 3.4089 21 7 -2.3422 7.3474 2.5327 22 14 -3.7707 5.8696 4.3905 23 1 -3.7631 6.5690 5.7004 24 1 -4.9962 6.2407 3.6383 25 1 -3.7520 4.4015 4.6130 26 6 1.3287 5.1764 3.1013 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.8156 -0.8454 -0.2091 31 1 6.2708 -0.7053 -0.2055 32 1 7.3829 1.4793 0.0034 33 1 6.0483 3.5361 0.2004 34 1 2.5174 3.7332 -0.4450 35 1 3.9837 4.6366 0.0043 36 1 3.6843 3.9474 2.3673 37 1 2.2179 3.0439 1.9180 38 1 0.5131 4.1853 0.6692 39 1 1.3478 5.5275 -0.1726 40 1 -1.0823 5.8359 1.1301 41 1 0.0997 7.1651 0.9398 42 1 -0.1426 8.1475 3.2038 43 1 -3.1846 7.8084 2.3960 44 1 1.9915 5.5343 3.8891 45 1 0.9369 4.1905 3.3515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592155123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:16 Heat of formation + Delta-G solvation = -98.106573 kcal Electronic energy + Delta-G solvation = -27638.808319 eV Core-core repulsion = 23814.489806 eV Total energy + Delta-G solvation = -3824.318513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.81987 -39.03221 -38.16515 -36.52523 -35.04213 -32.96481 -32.11628 -31.69214 -29.98268 -28.12865 -27.75761 -27.03165 -24.55404 -23.96101 -22.83519 -21.67807 -20.88155 -19.68548 -19.15874 -17.98352 -17.01298 -16.88136 -16.40080 -15.98004 -15.57380 -15.10895 -14.96044 -14.71034 -14.30034 -13.98317 -13.64793 -13.50474 -13.35250 -13.16821 -12.82421 -12.57289 -12.25816 -12.17456 -11.96688 -11.86606 -11.76234 -11.33116 -11.13142 -10.95006 -10.87576 -10.68767 -10.60216 -10.45602 -10.37713 -10.11787 -9.88942 -9.68164 -9.23760 -9.01235 -8.84039 -8.54101 -8.00124 -7.56364 -6.11856 -4.22338 0.55830 1.14435 2.49149 2.62834 3.26020 3.32327 3.35141 3.58354 4.34408 4.50219 4.56748 4.70183 4.75149 5.04953 5.07050 5.11588 5.14323 5.17819 5.23469 5.47004 5.51247 5.53929 5.59514 5.76743 5.95621 5.99969 6.04636 6.08288 6.13546 6.15991 6.20741 6.33160 6.45782 6.51745 6.60799 6.69805 6.73433 6.78153 7.13370 7.26339 7.55197 7.65376 7.76883 7.80675 7.86756 7.94094 8.32128 8.81126 9.46056 9.58426 10.92577 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017136 B = 0.003659 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.553417 B = 7651.546750 C = 8745.738711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.361 6.361 3 C 0.497 3.503 4 O -0.478 6.478 5 C -0.127 4.127 6 C -0.062 4.062 7 C -0.144 4.144 8 C -0.083 4.083 9 C -0.130 4.130 10 C -0.006 4.006 11 C -0.096 4.096 12 C 0.063 3.937 13 N -0.510 5.510 14 C 0.032 3.968 15 C -0.116 4.116 16 C 0.251 3.749 17 O -0.586 6.586 18 C -0.537 4.537 19 H 0.057 0.943 20 C 0.069 3.931 21 N -0.890 5.890 22 Si 0.896 3.104 23 H -0.278 1.278 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.054 3.946 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.135 0.865 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.134 0.866 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.031 0.969 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.050 0.950 42 H 0.373 0.627 43 H 0.265 0.735 44 H 0.068 0.932 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.875 -15.199 -7.973 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.278 6.278 3 C 0.342 3.658 4 O -0.365 6.365 5 C -0.128 4.128 6 C -0.080 4.080 7 C -0.162 4.162 8 C -0.101 4.101 9 C -0.148 4.148 10 C -0.007 4.007 11 C -0.133 4.133 12 C -0.066 4.066 13 N -0.234 5.234 14 C -0.095 4.095 15 C -0.155 4.155 16 C 0.212 3.788 17 O -0.393 6.393 18 C -0.575 4.575 19 H 0.076 0.924 20 C -0.133 4.133 21 N -0.529 5.529 22 Si 0.724 3.276 23 H -0.204 1.204 24 H -0.212 1.212 25 H -0.200 1.200 26 C -0.074 4.074 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.118 0.882 30 H 0.153 0.847 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.152 0.848 34 H 0.123 0.877 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.221 0.779 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 13.442 -14.645 -7.966 21.416 hybrid contribution -2.130 -0.758 0.442 2.304 sum 11.312 -15.403 -7.524 20.539 Atomic orbital electron populations 1.23285 0.75712 1.03529 1.03147 1.86495 1.23732 1.32920 1.84661 1.21271 0.89162 0.81673 0.73708 1.90893 1.66651 1.34939 1.44040 1.18989 0.89188 0.94611 1.10013 1.21430 0.93964 0.97679 0.94959 1.21109 0.94291 0.98110 1.02704 1.21431 1.00258 0.92457 0.95922 1.21118 0.92641 0.99219 1.01813 1.20154 0.94005 0.94070 0.92492 1.21020 1.00038 0.92732 0.99481 1.22042 0.97442 0.92454 0.94656 1.65477 1.20820 1.32866 1.04193 1.23205 0.92066 0.99582 0.94664 1.22777 0.97563 0.97042 0.98073 1.19241 0.89318 0.80554 0.89724 1.86159 1.44987 1.20699 1.87450 1.21706 0.93620 1.15701 1.26519 0.92429 1.25005 0.98797 0.94910 0.94628 1.69869 1.26809 1.23067 1.33141 0.86549 0.81930 0.78925 0.80219 1.20399 1.21170 1.20008 1.23021 0.95505 0.98083 0.90784 0.91426 0.91718 0.88203 0.84681 0.85366 0.85431 0.84842 0.87676 0.90609 0.92063 0.95034 0.93173 0.92474 0.90765 0.93151 0.77860 0.92518 0.91392 0.94052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.56 101.05 1.07 1.46 16 2 O -0.36 -4.51 9.83 -40.54 -0.40 -4.91 16 3 C 0.50 7.14 7.45 34.61 0.26 7.40 16 4 O -0.48 -8.15 9.73 -19.25 -0.19 -8.34 16 5 C -0.13 -1.62 5.86 -104.99 -0.62 -2.23 16 6 C -0.06 -0.62 9.62 -39.17 -0.38 -1.00 16 7 C -0.14 -1.20 10.03 -39.64 -0.40 -1.60 16 8 C -0.08 -0.70 10.04 -39.49 -0.40 -1.09 16 9 C -0.13 -1.35 9.66 -39.64 -0.38 -1.73 16 10 C -0.01 -0.08 5.18 -104.21 -0.54 -0.62 16 11 C -0.10 -1.46 4.34 -27.88 -0.12 -1.58 16 12 C 0.06 1.12 4.58 -3.82 -0.02 1.10 16 13 N -0.51 -10.86 5.49 -229.81 -1.26 -12.12 16 14 C 0.03 0.71 5.08 -2.09 -0.01 0.70 16 15 C -0.12 -2.92 5.37 -25.35 -0.14 -3.05 16 16 C 0.25 6.64 1.07 -90.39 -0.10 6.54 16 17 O -0.59 -16.06 12.96 -35.23 -0.46 -16.52 16 18 C -0.54 -14.99 8.12 -34.44 -0.28 -15.27 16 19 H 0.06 1.61 7.63 -52.49 -0.40 1.21 16 20 C 0.07 1.88 4.98 -17.82 -0.09 1.79 16 21 N -0.89 -24.47 10.68 55.43 0.59 -23.87 16 22 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.05 1.27 5.77 -2.18 -0.01 1.26 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.14 1.14 7.63 -52.49 -0.40 0.74 16 31 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 32 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 33 H 0.13 1.19 8.02 -52.49 -0.42 0.77 16 34 H 0.11 1.78 4.62 -51.93 -0.24 1.54 16 35 H 0.08 1.09 7.98 -51.93 -0.41 0.68 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.03 0.60 6.19 -51.93 -0.32 0.28 16 38 H 0.05 1.12 6.06 -51.92 -0.31 0.81 16 39 H 0.06 1.17 7.68 -51.93 -0.40 0.77 16 40 H 0.07 2.01 6.78 -51.93 -0.35 1.66 16 41 H 0.05 1.30 7.98 -51.93 -0.41 0.88 16 42 H 0.37 10.19 7.81 45.56 0.36 10.55 16 43 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.07 1.60 8.08 -51.93 -0.42 1.18 16 45 H 0.04 0.98 7.42 -51.93 -0.39 0.60 16 LS Contribution 358.14 15.07 5.40 5.40 Total: -1.00 -30.90 358.14 -9.28 -40.18 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -5.80 Total: 11.98 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -2.15 Total: -7.92 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: -0.67 Total: -35.99 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -1.04 Total: -29.76 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.90 -9.28 -40.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592155123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.925 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds