Wall clock time and date at job start Tue Mar 31 2020 12:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34718 * 116.99858 * 2 1 4 4 O 1.21474 * 119.99795 * 0.02562 * 3 2 1 5 5 C 1.47721 * 120.00256 * 179.97438 * 3 2 1 6 6 C 1.39647 * 120.14722 * 5.60726 * 5 3 2 7 7 C 1.37928 * 119.84752 * 180.02562 * 6 5 3 8 8 C 1.38385 * 120.14928 * 359.97438 * 7 6 5 9 9 C 1.38348 * 120.30479 * 359.75389 * 8 7 6 10 10 C 1.37971 * 120.14569 * 0.50653 * 9 8 7 11 11 C 1.50700 * 120.07224 * 179.77217 * 10 9 8 12 12 C 1.52999 * 109.46666 * 257.87534 * 11 10 9 13 13 N 1.46906 * 109.46977 * 180.02562 * 12 11 10 14 14 C 1.48721 * 111.01457 * 54.48826 * 13 12 11 15 15 C 1.54383 * 104.51663 * 158.96667 * 14 13 12 16 16 C 1.54259 * 105.14970 * 336.27191 * 15 14 13 17 17 O 1.42891 * 110.32535 * 118.94526 * 16 15 14 18 18 C 1.50708 * 110.32176 * 241.05208 * 16 15 14 19 19 H 1.07996 * 119.99678 * 123.41998 * 18 16 15 20 20 C 1.37876 * 120.00039 * 303.42194 * 18 16 15 21 21 N 1.31516 * 119.99634 * 3.87437 * 20 18 16 22 22 Si 1.86799 * 119.99973 * 183.87591 * 20 18 16 23 23 H 1.48498 * 109.46734 * 84.99514 * 22 20 18 24 24 H 1.48502 * 109.46950 * 204.99122 * 22 20 18 25 25 H 1.48495 * 109.47004 * 324.99337 * 22 20 18 26 26 C 1.48565 * 111.00007 * 169.99630 * 13 12 11 27 27 H 1.09001 * 109.47177 * 299.99864 * 1 2 3 28 28 H 1.08995 * 109.47167 * 60.00222 * 1 2 3 29 29 H 1.09004 * 109.46862 * 180.02562 * 1 2 3 30 30 H 1.07999 * 120.08084 * 0.03892 * 6 5 3 31 31 H 1.08007 * 119.92180 * 179.97438 * 7 6 5 32 32 H 1.08005 * 119.84976 * 179.97438 * 8 7 6 33 33 H 1.07995 * 119.92748 * 180.24995 * 9 8 7 34 34 H 1.08996 * 109.47133 * 137.87670 * 11 10 9 35 35 H 1.08997 * 109.47363 * 17.87204 * 11 10 9 36 36 H 1.08998 * 109.47679 * 60.00469 * 12 11 10 37 37 H 1.09005 * 109.47412 * 299.99485 * 12 11 10 38 38 H 1.09008 * 110.38722 * 40.24599 * 14 13 12 39 39 H 1.09001 * 110.51012 * 277.75243 * 14 13 12 40 40 H 1.09003 * 110.32164 * 217.31899 * 15 14 13 41 41 H 1.08997 * 110.32150 * 95.21446 * 15 14 13 42 42 H 0.96701 * 114.00317 * 64.74501 * 17 16 15 43 43 H 0.97001 * 119.99715 * 179.97438 * 21 20 18 44 44 H 1.08999 * 110.40376 * 82.18394 * 26 13 12 45 45 H 1.08996 * 110.40965 * 319.74048 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4019 2.2191 0.0005 5 6 3.5388 1.2778 0.0006 6 6 4.3022 0.1144 -0.1169 7 6 5.6792 0.1938 -0.1151 8 6 6.3043 1.4227 0.0022 9 6 5.5541 2.5798 0.1132 10 6 4.1760 2.5143 0.1183 11 6 3.3605 3.7753 0.2445 12 6 2.8412 3.9053 1.6778 13 7 2.0457 5.1342 1.8008 14 6 0.9620 5.1721 0.7829 15 6 -0.0689 6.1703 1.3522 16 6 0.1725 6.1741 2.8758 17 8 0.5487 7.4806 3.3155 18 6 -1.0649 5.7142 3.6029 19 1 -1.0138 4.8711 4.2758 20 6 -2.2622 6.3698 3.4089 21 7 -2.3422 7.3474 2.5327 22 14 -3.7707 5.8696 4.3905 23 1 -3.7631 6.5690 5.7004 24 1 -4.9962 6.2407 3.6383 25 1 -3.7520 4.4015 4.6130 26 6 1.3287 5.1764 3.1013 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.8156 -0.8454 -0.2091 31 1 6.2708 -0.7053 -0.2055 32 1 7.3829 1.4793 0.0034 33 1 6.0483 3.5361 0.2004 34 1 2.5174 3.7332 -0.4450 35 1 3.9837 4.6366 0.0043 36 1 3.6843 3.9474 2.3673 37 1 2.2179 3.0439 1.9180 38 1 0.5131 4.1853 0.6692 39 1 1.3478 5.5275 -0.1726 40 1 -1.0823 5.8359 1.1301 41 1 0.0997 7.1651 0.9398 42 1 -0.1426 8.1475 3.2038 43 1 -3.1846 7.8084 2.3960 44 1 1.9915 5.5343 3.8891 45 1 0.9369 4.1905 3.3515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592155123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:14 Heat of formation + Delta-G solvation = -118.976931 kcal Electronic energy + Delta-G solvation = -27639.713326 eV Core-core repulsion = 23814.489806 eV Total energy + Delta-G solvation = -3825.223520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.82742 -40.18971 -39.71331 -37.63843 -36.82350 -34.28668 -34.22210 -32.49348 -31.50854 -29.86846 -28.99673 -28.38810 -26.31910 -25.02695 -24.18064 -22.73121 -22.05252 -21.42135 -20.93491 -19.01093 -18.90410 -18.00642 -17.52076 -17.18727 -17.00013 -16.64478 -16.35987 -15.99610 -15.60816 -15.49999 -15.03788 -14.96559 -14.59392 -14.39202 -14.23739 -13.82802 -13.74318 -13.56280 -13.33845 -13.26681 -13.06713 -12.87713 -12.64721 -12.54857 -12.34506 -12.25773 -12.12232 -12.07505 -11.93446 -11.79494 -11.67257 -11.04914 -10.99390 -10.65621 -10.12593 -10.01018 -9.74057 -9.34003 -8.21752 -6.40963 -0.29093 0.38085 1.37627 1.39041 1.48165 1.53405 1.70273 2.35793 2.76869 3.01366 3.15137 3.66484 3.79184 3.90592 3.94914 4.09284 4.13219 4.15332 4.26610 4.27977 4.29961 4.43468 4.48131 4.48467 4.56466 4.60053 4.66928 4.72442 4.81289 4.88234 4.97845 5.03058 5.07979 5.18895 5.25897 5.33812 5.38662 5.49457 5.50719 5.56809 5.61712 5.75173 5.83687 5.93934 6.18355 6.25830 6.65251 6.73588 7.30618 7.40277 8.81578 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017136 B = 0.003659 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.553417 B = 7651.546750 C = 8745.738711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.358 6.358 3 C 0.492 3.508 4 O -0.516 6.516 5 C -0.149 4.149 6 C -0.063 4.063 7 C -0.134 4.134 8 C -0.073 4.073 9 C -0.134 4.134 10 C -0.029 4.029 11 C -0.084 4.084 12 C 0.068 3.932 13 N -0.510 5.510 14 C 0.048 3.952 15 C -0.106 4.106 16 C 0.237 3.763 17 O -0.592 6.592 18 C -0.566 4.566 19 H 0.049 0.951 20 C 0.030 3.970 21 N -0.905 5.905 22 Si 0.960 3.040 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.273 1.273 26 C 0.061 3.939 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.137 0.863 30 H 0.149 0.851 31 H 0.164 0.836 32 H 0.163 0.837 33 H 0.147 0.853 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.017 0.983 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.037 0.963 42 H 0.370 0.630 43 H 0.269 0.731 44 H 0.067 0.933 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.831 -17.198 -8.260 24.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.339 3.661 4 O -0.406 6.406 5 C -0.151 4.151 6 C -0.081 4.081 7 C -0.152 4.152 8 C -0.090 4.090 9 C -0.151 4.151 10 C -0.030 4.030 11 C -0.122 4.122 12 C -0.060 4.060 13 N -0.234 5.234 14 C -0.079 4.079 15 C -0.145 4.145 16 C 0.198 3.802 17 O -0.399 6.399 18 C -0.604 4.604 19 H 0.067 0.933 20 C -0.171 4.171 21 N -0.544 5.544 22 Si 0.785 3.215 23 H -0.198 1.198 24 H -0.203 1.203 25 H -0.198 1.198 26 C -0.067 4.067 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.155 0.845 30 H 0.167 0.833 31 H 0.181 0.819 32 H 0.181 0.819 33 H 0.164 0.836 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.035 0.965 38 H 0.061 0.939 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.217 0.783 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 15.417 -16.665 -8.262 24.159 hybrid contribution -2.674 -0.200 0.504 2.729 sum 12.742 -16.865 -7.758 22.516 Atomic orbital electron populations 1.23480 0.74844 1.05628 1.02065 1.86495 1.24619 1.32119 1.84237 1.21779 0.90107 0.81543 0.72678 1.90868 1.67598 1.36091 1.46076 1.19082 0.88288 0.95764 1.11919 1.21660 0.94878 0.97199 0.94394 1.21556 0.93633 0.99534 1.00430 1.21857 1.01938 0.91566 0.93663 1.21337 0.91557 1.00880 1.01376 1.20016 0.94961 0.92898 0.95080 1.20793 0.99790 0.94699 0.96875 1.22069 0.96773 0.90052 0.97107 1.65457 1.20095 1.35178 1.02651 1.23007 0.91491 0.98203 0.95239 1.22577 0.97132 0.97042 0.97777 1.19458 0.90174 0.80464 0.90124 1.86147 1.44953 1.21150 1.87676 1.21905 0.94952 1.16208 1.27378 0.93271 1.25708 1.01316 0.94775 0.95329 1.69958 1.27602 1.23327 1.33506 0.85557 0.78521 0.78572 0.78877 1.19841 1.20293 1.19804 1.22856 0.94852 0.96902 0.92082 0.93284 0.92071 0.84469 0.83345 0.81872 0.81932 0.83559 0.89741 0.89993 0.90871 0.96518 0.93851 0.90939 0.93308 0.94384 0.78276 0.92200 0.91424 0.94723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.56 113.37 1.20 1.90 16 2 O -0.36 -8.92 9.83 -56.27 -0.55 -9.47 16 3 C 0.49 14.45 7.45 70.33 0.52 14.97 16 4 O -0.52 -18.47 9.73 19.92 0.19 -18.28 16 5 C -0.15 -3.70 5.86 -20.10 -0.12 -3.82 16 6 C -0.06 -1.11 9.62 22.54 0.22 -0.90 16 7 C -0.13 -1.66 10.03 22.23 0.22 -1.44 16 8 C -0.07 -0.91 10.04 22.33 0.22 -0.69 16 9 C -0.13 -2.42 9.66 22.23 0.21 -2.21 16 10 C -0.03 -0.71 5.18 -19.60 -0.10 -0.81 16 11 C -0.08 -2.58 4.34 29.85 0.13 -2.45 16 12 C 0.07 2.46 4.58 86.30 0.40 2.86 16 13 N -0.51 -22.10 5.49 -881.00 -4.83 -26.93 16 14 C 0.05 2.18 5.08 86.42 0.44 2.62 16 15 C -0.11 -5.56 5.37 31.49 0.17 -5.39 16 16 C 0.24 12.91 1.07 -10.64 -0.01 12.90 16 17 O -0.59 -33.32 12.96 -148.98 -1.93 -35.25 16 18 C -0.57 -32.47 8.12 25.60 0.21 -32.26 16 19 H 0.05 2.82 7.63 -2.91 -0.02 2.80 16 20 C 0.03 1.65 4.98 84.65 0.42 2.07 16 21 N -0.91 -50.64 10.68 21.45 0.23 -50.41 16 22 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 26 C 0.06 2.97 5.77 86.45 0.50 3.47 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.15 2.13 7.63 -2.91 -0.02 2.11 16 31 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 32 H 0.16 0.95 8.06 -2.91 -0.02 0.92 16 33 H 0.15 2.20 8.02 -2.91 -0.02 2.17 16 34 H 0.08 2.95 4.62 -2.39 -0.01 2.94 16 35 H 0.08 2.32 7.98 -2.39 -0.02 2.30 16 36 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.02 0.66 6.19 -2.38 -0.01 0.64 16 38 H 0.04 2.03 6.06 -2.38 -0.01 2.01 16 39 H 0.07 3.03 7.68 -2.39 -0.02 3.01 16 40 H 0.05 2.75 6.78 -2.39 -0.02 2.74 16 41 H 0.04 2.02 7.98 -2.39 -0.02 2.00 16 42 H 0.37 20.83 7.81 -74.06 -0.58 20.25 16 43 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 44 H 0.07 3.25 8.08 -2.39 -0.02 3.23 16 45 H 0.03 1.71 7.42 -2.39 -0.02 1.69 16 Total: -1.00 -68.66 358.14 0.19 -68.47 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: 0.43 Total: 35.32 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 4.63 Total: -9.19 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -4.60 Total: -77.34 kcal Atomic # 8 Polarization: -60.71 SS G_CDS: -2.29 Total: -63.00 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -68.66 0.19 -68.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592155123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.508 kcal (2) G-P(sol) polarization free energy of solvation -68.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds