Wall clock time and date at job start Tue Mar 31 2020 12:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34226 * 117.00509 * 2 1 4 4 O 1.20826 * 119.99776 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00069 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.53063 * 300.09011 * 5 3 2 7 7 C 1.53113 * 109.50376 * 60.19491 * 5 3 2 8 8 C 1.53096 * 109.15212 * 177.59595 * 7 5 3 9 9 H 1.09004 * 109.48732 * 182.39269 * 8 7 5 10 10 O 1.42902 * 109.50893 * 62.28942 * 8 7 5 11 11 C 1.53035 * 109.29259 * 302.33657 * 8 7 5 12 12 N 1.46848 * 109.51144 * 59.18588 * 11 8 7 13 13 C 1.46903 * 110.99745 * 174.16732 * 12 11 8 14 14 C 1.50692 * 109.47266 * 293.95291 * 13 12 11 15 15 C 1.38633 * 119.75193 * 269.72604 * 14 13 12 16 16 C 1.37613 * 120.25409 * 179.76177 * 15 14 13 17 17 C 1.40721 * 119.74236 * 0.48939 * 16 15 14 18 18 C 1.41394 * 120.24405 * 179.78650 * 17 16 15 19 19 H 1.08003 * 119.99970 * 150.20576 * 18 17 16 20 20 C 1.39949 * 120.00380 * 330.20865 * 18 17 16 21 21 N 1.30821 * 120.00171 * 161.73266 * 20 18 17 22 22 Si 1.86802 * 119.99703 * 341.73348 * 20 18 17 23 23 H 1.48496 * 109.47025 * 95.41025 * 22 20 18 24 24 H 1.48494 * 109.46950 * 215.41290 * 22 20 18 25 25 H 1.48506 * 109.46949 * 335.41172 * 22 20 18 26 26 C 1.40719 * 119.50895 * 359.76653 * 17 16 15 27 27 C 1.37616 * 119.74505 * 359.97438 * 26 17 16 28 28 C 1.46845 * 111.19663 * 298.26460 * 12 11 8 29 29 H 1.08999 * 109.47651 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46744 * 300.00274 * 1 2 3 31 31 H 1.09003 * 109.47382 * 59.99647 * 1 2 3 32 32 H 1.09000 * 109.52303 * 297.49538 * 7 5 3 33 33 H 1.08994 * 109.52713 * 57.63064 * 7 5 3 34 34 H 0.96696 * 114.00120 * 180.17847 * 10 8 7 35 35 H 1.08998 * 109.46406 * 299.17428 * 11 8 7 36 36 H 1.08997 * 109.46177 * 179.19601 * 11 8 7 37 37 H 1.09003 * 109.47046 * 53.95676 * 13 12 11 38 38 H 1.09000 * 109.47087 * 173.94941 * 13 12 11 39 39 H 1.08006 * 119.87155 * 359.97438 * 15 14 13 40 40 H 1.07994 * 120.13174 * 180.22942 * 16 15 14 41 41 H 0.96996 * 119.99920 * 180.02562 * 21 20 18 42 42 H 1.08000 * 120.12169 * 179.97438 * 26 17 16 43 43 H 1.08000 * 119.87557 * 180.02562 * 27 26 17 44 44 H 1.09000 * 109.46115 * 181.76614 * 28 12 11 45 45 H 1.09001 * 109.46128 * 301.73439 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9576 0.7792 0.8880 7 6 4.1139 0.5852 -1.2533 8 6 5.6386 0.7222 -1.2762 9 1 6.0306 0.2702 -2.1874 10 8 6.1943 0.0611 -0.1377 11 6 6.0136 2.2054 -1.2393 12 7 5.4675 2.8193 -0.0222 13 6 5.9235 4.2088 0.1167 14 6 7.4133 4.2283 0.3428 15 6 7.9137 4.1831 1.6348 16 6 9.2724 4.1955 1.8529 17 6 10.1545 4.2647 0.7587 18 6 11.5523 4.2826 0.9708 19 1 12.2166 3.8656 0.2283 20 6 12.0752 4.8407 2.1429 21 7 13.2955 4.5530 2.5165 22 14 11.0306 5.9964 3.1738 23 1 10.3737 5.2307 4.2634 24 1 11.8937 7.0523 3.7614 25 1 9.9941 6.6248 2.3159 26 6 9.6351 4.3156 -0.5481 27 6 8.2729 4.2967 -0.7427 28 6 4.0012 2.7419 -0.0005 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 3.8432 -0.4705 -1.2358 33 1 3.6917 1.0549 -2.1416 34 1 7.1586 0.1101 -0.0863 35 1 5.6011 2.7063 -2.1152 36 1 7.0989 2.3058 -1.2412 37 1 5.6866 4.7616 -0.7924 38 1 5.4211 4.6730 0.9654 39 1 7.2347 4.1345 2.4733 40 1 9.6601 4.1564 2.8601 41 1 13.6577 4.9395 3.3291 42 1 10.3031 4.3694 -1.3951 43 1 7.8721 4.3352 -1.7448 44 1 3.6250 3.2323 0.8974 45 1 3.5982 3.2401 -0.8822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592194155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:07 Heat of formation + Delta-G solvation = -115.605227 kcal Electronic energy + Delta-G solvation = -27017.212830 eV Core-core repulsion = 23192.135518 eV Total energy + Delta-G solvation = -3825.077312 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.91724 -39.27683 -37.80568 -36.72226 -35.69950 -34.02596 -33.10563 -30.66433 -30.18236 -29.67018 -28.04291 -27.03182 -24.73360 -23.82146 -22.44093 -21.48705 -21.16264 -19.90076 -19.80120 -17.78240 -17.44243 -17.13935 -16.78048 -16.43820 -15.67091 -15.54014 -14.92841 -14.70323 -14.47334 -14.03342 -13.85820 -13.67423 -13.59542 -13.42365 -13.10998 -13.00857 -12.75677 -12.39241 -12.33230 -11.94509 -11.84414 -11.51250 -11.40111 -11.31893 -11.06508 -11.03813 -10.84827 -10.78425 -10.56288 -10.33566 -10.20461 -9.83267 -9.70789 -9.55113 -9.13100 -8.08970 -7.70909 -7.51131 -6.96147 -4.49082 2.00469 2.41028 2.58967 2.68263 3.11469 3.21730 3.31737 3.97793 4.01030 4.29577 4.40494 4.58043 4.66029 4.78580 4.82594 4.90084 4.98409 5.01647 5.24580 5.26297 5.40951 5.42337 5.52464 5.57593 5.67184 5.71743 5.76880 5.93282 5.96618 6.05322 6.08540 6.11594 6.16882 6.22069 6.56165 6.83390 6.88936 7.15731 7.21984 7.27045 7.43194 7.54214 7.59310 7.80842 7.83730 7.88862 8.11765 8.34936 8.65046 8.79706 10.06267 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.025422 B = 0.002862 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.163282 B = 9779.509995 C =10116.699803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.467 3.533 4 O -0.509 6.509 5 C -0.071 4.071 6 H 0.127 0.873 7 C -0.103 4.103 8 C 0.113 3.887 9 H 0.061 0.939 10 O -0.554 6.554 11 C 0.017 3.983 12 N -0.519 5.519 13 C 0.120 3.880 14 C -0.209 4.209 15 C -0.051 4.051 16 C -0.239 4.239 17 C 0.095 3.905 18 C -0.448 4.448 19 H 0.089 0.911 20 C 0.084 3.916 21 N -0.809 5.809 22 Si 0.912 3.088 23 H -0.270 1.270 24 H -0.292 1.292 25 H -0.244 1.244 26 C -0.211 4.211 27 C -0.076 4.076 28 C 0.072 3.928 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.384 0.616 35 H 0.034 0.966 36 H 0.096 0.904 37 H 0.026 0.974 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.285 0.715 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.725 -7.317 -5.861 20.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.310 3.690 4 O -0.397 6.397 5 C -0.091 4.091 6 H 0.145 0.855 7 C -0.141 4.141 8 C 0.054 3.946 9 H 0.079 0.921 10 O -0.360 6.360 11 C -0.111 4.111 12 N -0.244 5.244 13 C -0.006 4.006 14 C -0.210 4.210 15 C -0.070 4.070 16 C -0.258 4.258 17 C 0.092 3.908 18 C -0.477 4.477 19 H 0.107 0.893 20 C -0.135 4.135 21 N -0.433 5.433 22 Si 0.739 3.261 23 H -0.196 1.196 24 H -0.220 1.220 25 H -0.168 1.168 26 C -0.231 4.231 27 C -0.095 4.095 28 C -0.056 4.056 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.232 0.768 35 H 0.052 0.948 36 H 0.115 0.885 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.095 0.905 42 H 0.116 0.884 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -19.159 -7.395 -5.206 21.186 hybrid contribution -0.217 1.140 -0.247 1.186 sum -19.376 -6.255 -5.453 21.078 Atomic orbital electron populations 1.23261 0.76587 1.03628 1.02484 1.86535 1.23210 1.33556 1.84023 1.23935 0.92108 0.81187 0.71752 1.90661 1.67310 1.36374 1.45338 1.21000 0.85572 0.99417 1.03089 0.85518 1.21560 0.94653 1.01797 0.96072 1.21696 0.92720 0.91238 0.88993 0.92106 1.86420 1.26368 1.76955 1.46265 1.22941 1.02476 0.94766 0.90943 1.61875 1.06275 1.18911 1.37308 1.20738 0.94002 0.86457 0.99367 1.18821 0.92217 1.16657 0.93352 1.20413 0.94510 0.96960 0.95101 1.21028 0.93207 1.13713 0.97868 1.17735 0.93305 0.88442 0.91282 1.19506 0.91260 1.33678 1.03221 0.89280 1.26166 0.95196 0.95703 0.96427 1.69697 1.16250 1.35512 1.21831 0.86295 0.80013 0.79763 0.80014 1.19631 1.21989 1.16765 1.20961 0.93752 1.11882 0.96458 1.20466 0.93616 0.99457 0.95973 1.21857 0.88921 0.92898 1.01934 0.88115 0.91913 0.92012 0.89805 0.90697 0.76838 0.94755 0.88548 0.95531 0.91284 0.88918 0.88349 0.90469 0.88408 0.89384 0.90032 0.94515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.81 10.50 -39.25 -0.41 -4.23 16 3 C 0.47 5.69 7.26 36.01 0.26 5.95 16 4 O -0.51 -7.35 15.73 -18.75 -0.29 -7.65 16 5 C -0.07 -0.85 2.64 -91.70 -0.24 -1.09 16 6 H 0.13 1.62 7.80 -51.93 -0.40 1.21 16 7 C -0.10 -1.08 4.94 -26.62 -0.13 -1.21 16 8 C 0.11 1.27 3.80 -26.66 -0.10 1.17 16 9 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 10 O -0.55 -7.06 12.65 -35.23 -0.45 -7.50 16 11 C 0.02 0.22 4.81 -3.83 -0.02 0.20 16 12 N -0.52 -7.53 4.53 -236.12 -1.07 -8.60 16 13 C 0.12 1.92 5.11 -4.98 -0.03 1.89 16 14 C -0.21 -3.99 4.92 -104.33 -0.51 -4.50 16 15 C -0.05 -1.07 9.67 -39.66 -0.38 -1.46 16 16 C -0.24 -5.63 7.18 -38.87 -0.28 -5.91 16 17 C 0.10 2.35 5.10 -106.82 -0.55 1.81 16 18 C -0.45 -11.92 9.57 -37.74 -0.36 -12.28 16 19 H 0.09 2.48 8.06 -52.48 -0.42 2.05 16 20 C 0.08 2.18 5.40 -17.34 -0.09 2.09 16 21 N -0.81 -21.42 13.93 55.55 0.77 -20.65 16 22 Si 0.91 20.75 24.52 -169.99 -4.17 16.59 16 23 H -0.27 -5.99 6.71 56.52 0.38 -5.61 16 24 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.24 -5.69 6.86 56.52 0.39 -5.30 16 26 C -0.21 -4.68 9.80 -38.87 -0.38 -5.06 16 27 C -0.08 -1.49 7.84 -39.66 -0.31 -1.80 16 28 C 0.07 0.95 4.03 -3.84 -0.02 0.93 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 31 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.38 4.23 9.08 45.56 0.41 4.64 16 35 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.10 1.41 5.74 -51.93 -0.30 1.11 16 37 H 0.03 0.41 8.06 -51.93 -0.42 -0.01 16 38 H 0.07 1.07 7.92 -51.93 -0.41 0.66 16 39 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 40 H 0.10 2.35 4.73 -52.49 -0.25 2.10 16 41 H 0.28 6.84 8.30 -40.82 -0.34 6.51 16 42 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 43 H 0.09 1.50 7.94 -52.49 -0.42 1.08 16 44 H 0.08 1.11 7.99 -51.93 -0.41 0.69 16 45 H 0.04 0.49 8.08 -51.93 -0.42 0.07 16 LS Contribution 361.95 15.07 5.45 5.45 Total: -1.00 -29.10 361.95 -8.25 -37.36 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.02 Total: 7.15 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -2.07 Total: -17.93 kcal Atomic # 7 Polarization: -28.95 SS G_CDS: -0.30 Total: -29.24 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -1.15 Total: -19.38 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.17 Total: 16.59 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.10 -8.25 -37.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592194155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.249 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds