Wall clock time and date at job start Tue Mar 31 2020 12:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34226 * 117.00509 * 2 1 4 4 O 1.20826 * 119.99776 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00069 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.53063 * 300.09011 * 5 3 2 7 7 C 1.53113 * 109.50376 * 60.19491 * 5 3 2 8 8 C 1.53096 * 109.15212 * 177.59595 * 7 5 3 9 9 H 1.09004 * 109.48732 * 182.39269 * 8 7 5 10 10 O 1.42902 * 109.50893 * 62.28942 * 8 7 5 11 11 C 1.53035 * 109.29259 * 302.33657 * 8 7 5 12 12 N 1.46848 * 109.51144 * 59.18588 * 11 8 7 13 13 C 1.46903 * 110.99745 * 174.16732 * 12 11 8 14 14 C 1.50692 * 109.47266 * 293.95291 * 13 12 11 15 15 C 1.38633 * 119.75193 * 269.72604 * 14 13 12 16 16 C 1.37613 * 120.25409 * 179.76177 * 15 14 13 17 17 C 1.40721 * 119.74236 * 0.48939 * 16 15 14 18 18 C 1.41394 * 120.24405 * 179.78650 * 17 16 15 19 19 H 1.08003 * 119.99970 * 150.20576 * 18 17 16 20 20 C 1.39949 * 120.00380 * 330.20865 * 18 17 16 21 21 N 1.30821 * 120.00171 * 161.73266 * 20 18 17 22 22 Si 1.86802 * 119.99703 * 341.73348 * 20 18 17 23 23 H 1.48496 * 109.47025 * 95.41025 * 22 20 18 24 24 H 1.48494 * 109.46950 * 215.41290 * 22 20 18 25 25 H 1.48506 * 109.46949 * 335.41172 * 22 20 18 26 26 C 1.40719 * 119.50895 * 359.76653 * 17 16 15 27 27 C 1.37616 * 119.74505 * 359.97438 * 26 17 16 28 28 C 1.46845 * 111.19663 * 298.26460 * 12 11 8 29 29 H 1.08999 * 109.47651 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46744 * 300.00274 * 1 2 3 31 31 H 1.09003 * 109.47382 * 59.99647 * 1 2 3 32 32 H 1.09000 * 109.52303 * 297.49538 * 7 5 3 33 33 H 1.08994 * 109.52713 * 57.63064 * 7 5 3 34 34 H 0.96696 * 114.00120 * 180.17847 * 10 8 7 35 35 H 1.08998 * 109.46406 * 299.17428 * 11 8 7 36 36 H 1.08997 * 109.46177 * 179.19601 * 11 8 7 37 37 H 1.09003 * 109.47046 * 53.95676 * 13 12 11 38 38 H 1.09000 * 109.47087 * 173.94941 * 13 12 11 39 39 H 1.08006 * 119.87155 * 359.97438 * 15 14 13 40 40 H 1.07994 * 120.13174 * 180.22942 * 16 15 14 41 41 H 0.96996 * 119.99920 * 180.02562 * 21 20 18 42 42 H 1.08000 * 120.12169 * 179.97438 * 26 17 16 43 43 H 1.08000 * 119.87557 * 180.02562 * 27 26 17 44 44 H 1.09000 * 109.46115 * 181.76614 * 28 12 11 45 45 H 1.09001 * 109.46128 * 301.73439 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9576 0.7792 0.8880 7 6 4.1139 0.5852 -1.2533 8 6 5.6386 0.7222 -1.2762 9 1 6.0306 0.2702 -2.1874 10 8 6.1943 0.0611 -0.1377 11 6 6.0136 2.2054 -1.2393 12 7 5.4675 2.8193 -0.0222 13 6 5.9235 4.2088 0.1167 14 6 7.4133 4.2283 0.3428 15 6 7.9137 4.1831 1.6348 16 6 9.2724 4.1955 1.8529 17 6 10.1545 4.2647 0.7587 18 6 11.5523 4.2826 0.9708 19 1 12.2166 3.8656 0.2283 20 6 12.0752 4.8407 2.1429 21 7 13.2955 4.5530 2.5165 22 14 11.0306 5.9964 3.1738 23 1 10.3737 5.2307 4.2634 24 1 11.8937 7.0523 3.7614 25 1 9.9941 6.6248 2.3159 26 6 9.6351 4.3156 -0.5481 27 6 8.2729 4.2967 -0.7427 28 6 4.0012 2.7419 -0.0005 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 3.8432 -0.4705 -1.2358 33 1 3.6917 1.0549 -2.1416 34 1 7.1586 0.1101 -0.0863 35 1 5.6011 2.7063 -2.1152 36 1 7.0989 2.3058 -1.2412 37 1 5.6866 4.7616 -0.7924 38 1 5.4211 4.6730 0.9654 39 1 7.2347 4.1345 2.4733 40 1 9.6601 4.1564 2.8601 41 1 13.6577 4.9395 3.3291 42 1 10.3031 4.3694 -1.3951 43 1 7.8721 4.3352 -1.7448 44 1 3.6250 3.2323 0.8974 45 1 3.5982 3.2401 -0.8822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592194155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:06 Heat of formation + Delta-G solvation = -135.363558 kcal Electronic energy + Delta-G solvation = -27018.069616 eV Core-core repulsion = 23192.135518 eV Total energy + Delta-G solvation = -3825.934097 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.83987 -40.40536 -39.34640 -37.61374 -36.82724 -35.59952 -34.45045 -32.25825 -31.53697 -31.01270 -28.86796 -28.39211 -25.97399 -24.99251 -23.69220 -23.17019 -22.23627 -21.44953 -20.73838 -19.32160 -18.70135 -18.07851 -17.68611 -17.46568 -17.29395 -16.52913 -16.31588 -15.92821 -15.56374 -15.52351 -15.34514 -14.84767 -14.82162 -14.47836 -14.33966 -14.15420 -14.02135 -13.88201 -13.62382 -13.15681 -13.04640 -12.92258 -12.71517 -12.52727 -12.37191 -12.21146 -12.10261 -11.94913 -11.85610 -11.75914 -11.58386 -11.36934 -11.18069 -10.96708 -10.65614 -9.43747 -9.39538 -9.09682 -8.87795 -6.45718 0.78664 0.92632 1.08191 1.27601 1.40924 1.49300 1.66721 2.13307 2.56677 3.05282 3.42988 3.50305 3.64306 3.76964 3.87646 3.99843 4.14023 4.22338 4.29680 4.31046 4.32662 4.34064 4.46417 4.52636 4.57029 4.68650 4.70731 4.71411 4.78317 4.80507 4.84407 4.95708 5.06691 5.09891 5.12638 5.17062 5.32981 5.36542 5.65778 5.79601 5.94895 6.05802 6.14905 6.22922 6.30429 6.46695 6.65706 6.78578 6.88628 6.96479 8.20895 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.025422 B = 0.002862 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.163282 B = 9779.509995 C =10116.699803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.473 3.527 4 O -0.536 6.536 5 C -0.067 4.067 6 H 0.117 0.883 7 C -0.100 4.100 8 C 0.114 3.886 9 H 0.084 0.916 10 O -0.570 6.570 11 C 0.016 3.984 12 N -0.530 5.530 13 C 0.121 3.879 14 C -0.180 4.180 15 C -0.061 4.061 16 C -0.249 4.249 17 C 0.074 3.926 18 C -0.486 4.486 19 H 0.055 0.945 20 C 0.047 3.953 21 N -0.853 5.853 22 Si 0.965 3.035 23 H -0.262 1.262 24 H -0.280 1.280 25 H -0.253 1.253 26 C -0.219 4.219 27 C -0.068 4.068 28 C 0.077 3.923 29 H 0.132 0.868 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.388 0.612 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.292 0.708 42 H 0.100 0.900 43 H 0.122 0.878 44 H 0.075 0.925 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.281 -7.690 -6.769 24.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.317 3.683 4 O -0.425 6.425 5 C -0.086 4.086 6 H 0.135 0.865 7 C -0.137 4.137 8 C 0.055 3.945 9 H 0.101 0.899 10 O -0.377 6.377 11 C -0.112 4.112 12 N -0.254 5.254 13 C -0.005 4.005 14 C -0.182 4.182 15 C -0.079 4.079 16 C -0.268 4.268 17 C 0.071 3.929 18 C -0.516 4.516 19 H 0.074 0.926 20 C -0.167 4.167 21 N -0.480 5.480 22 Si 0.789 3.211 23 H -0.187 1.187 24 H -0.207 1.207 25 H -0.176 1.176 26 C -0.238 4.238 27 C -0.087 4.087 28 C -0.051 4.051 29 H 0.150 0.850 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.237 0.763 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.131 0.869 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.118 0.882 43 H 0.140 0.860 44 H 0.093 0.907 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -22.721 -7.792 -6.121 24.788 hybrid contribution 0.592 1.141 -0.121 1.291 sum -22.130 -6.651 -6.243 23.936 Atomic orbital electron populations 1.23568 0.74765 1.05749 1.02546 1.86520 1.24994 1.32615 1.83487 1.23906 0.92124 0.81219 0.71026 1.90653 1.67876 1.37257 1.46759 1.20901 0.85586 0.98602 1.03536 0.86476 1.21591 0.93990 1.02309 0.95810 1.21814 0.93222 0.90049 0.89450 0.89857 1.86406 1.26949 1.77175 1.47163 1.22989 1.01373 0.96089 0.90788 1.61761 1.07334 1.17767 1.38529 1.20704 0.91375 0.87861 1.00563 1.19274 0.94353 1.12090 0.92446 1.20702 0.93723 0.96706 0.96809 1.21095 0.94312 1.14201 0.97240 1.17859 0.92665 0.89518 0.92818 1.19481 0.92093 1.36444 1.03602 0.92647 1.26786 0.96121 0.96559 0.97217 1.69729 1.17644 1.37493 1.23118 0.85494 0.78568 0.78318 0.78726 1.18713 1.20730 1.17634 1.21154 0.95319 1.11680 0.95675 1.20762 0.92329 0.97737 0.97858 1.21787 0.87738 0.93792 1.01741 0.85038 0.92099 0.91759 0.88974 0.89236 0.76304 0.93359 0.90196 0.94017 0.90516 0.86869 0.89161 0.89780 0.88197 0.85990 0.90695 0.94226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.53 16 2 O -0.36 -6.79 10.50 -51.38 -0.54 -7.33 16 3 C 0.47 10.45 7.26 71.24 0.52 10.96 16 4 O -0.54 -14.42 15.73 21.97 0.35 -14.08 16 5 C -0.07 -1.41 2.64 -11.49 -0.03 -1.44 16 6 H 0.12 2.74 7.80 -2.39 -0.02 2.72 16 7 C -0.10 -1.74 4.94 30.66 0.15 -1.59 16 8 C 0.11 2.19 3.80 30.64 0.12 2.30 16 9 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 10 O -0.57 -13.23 12.65 -148.98 -1.88 -15.11 16 11 C 0.02 0.35 4.81 86.32 0.42 0.77 16 12 N -0.53 -13.62 4.53 -900.95 -4.08 -17.70 16 13 C 0.12 3.41 5.11 85.55 0.44 3.84 16 14 C -0.18 -6.34 4.92 -19.68 -0.10 -6.44 16 15 C -0.06 -2.43 9.67 22.22 0.21 -2.21 16 16 C -0.25 -11.65 7.18 22.73 0.16 -11.49 16 17 C 0.07 3.70 5.10 -21.29 -0.11 3.60 16 18 C -0.49 -27.27 9.57 23.46 0.22 -27.05 16 19 H 0.06 3.34 8.06 -2.91 -0.02 3.31 16 20 C 0.05 2.55 5.40 85.26 0.46 3.01 16 21 N -0.85 -47.37 13.93 21.83 0.30 -47.06 16 22 Si 0.96 43.54 24.52 68.60 1.68 45.22 16 23 H -0.26 -11.28 6.71 99.48 0.67 -10.61 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.25 -11.56 6.86 99.48 0.68 -10.88 16 26 C -0.22 -9.61 9.80 22.73 0.22 -9.39 16 27 C -0.07 -2.48 7.84 22.22 0.17 -2.30 16 28 C 0.08 1.81 4.03 86.32 0.35 2.16 16 29 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.80 8.13 -2.38 -0.02 0.78 16 31 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 32 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.39 7.95 9.08 -74.06 -0.67 7.27 16 35 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 2.08 5.74 -2.39 -0.01 2.07 16 37 H 0.04 1.08 8.06 -2.39 -0.02 1.06 16 38 H 0.08 2.08 7.92 -2.39 -0.02 2.06 16 39 H 0.11 4.05 8.06 -2.91 -0.02 4.02 16 40 H 0.09 4.32 4.73 -2.91 -0.01 4.31 16 41 H 0.29 14.61 8.30 -92.71 -0.77 13.84 16 42 H 0.10 4.26 8.06 -2.91 -0.02 4.24 16 43 H 0.12 3.64 7.94 -2.91 -0.02 3.61 16 44 H 0.07 1.85 7.99 -2.39 -0.02 1.83 16 45 H 0.04 0.92 8.08 -2.39 -0.02 0.90 16 Total: -1.00 -64.43 361.95 0.50 -63.93 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.26 Total: 25.87 kcal Atomic # 6 Polarization: -38.14 SS G_CDS: 4.41 Total: -33.73 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: -3.78 Total: -64.76 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -2.08 Total: -36.52 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.68 Total: 45.22 kcal Total: -64.43 0.50 -63.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592194155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.432 kcal (2) G-P(sol) polarization free energy of solvation -64.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds