Wall clock time and date at job start Tue Mar 31 2020 12:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34228 * 116.99564 * 2 1 4 4 O 1.20822 * 120.00827 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99660 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.50337 * 59.92330 * 5 3 2 7 7 C 1.53114 * 109.50325 * 299.80453 * 5 3 2 8 8 C 1.53120 * 109.15966 * 182.40339 * 7 5 3 9 9 H 1.09002 * 109.50704 * 177.59461 * 8 7 5 10 10 O 1.42904 * 109.53894 * 297.69435 * 8 7 5 11 11 C 1.53038 * 109.27843 * 57.65417 * 8 7 5 12 12 N 1.46839 * 109.52345 * 300.82092 * 11 8 7 13 13 C 1.46901 * 111.00117 * 185.84144 * 12 11 8 14 14 C 1.50691 * 109.47374 * 65.78755 * 13 12 11 15 15 C 1.38640 * 119.75265 * 269.72715 * 14 13 12 16 16 C 1.37612 * 120.25043 * 179.76299 * 15 14 13 17 17 C 1.40723 * 119.74565 * 0.48790 * 16 15 14 18 18 C 1.41390 * 120.24467 * 179.78769 * 17 16 15 19 19 H 1.08000 * 120.00029 * 150.20980 * 18 17 16 20 20 C 1.39939 * 120.00232 * 330.21042 * 18 17 16 21 21 N 1.30823 * 120.00396 * 161.73172 * 20 18 17 22 22 Si 1.86799 * 119.99920 * 341.73220 * 20 18 17 23 23 H 1.48507 * 109.47099 * 95.41406 * 22 20 18 24 24 H 1.48507 * 109.47235 * 215.41040 * 22 20 18 25 25 H 1.48494 * 109.47451 * 335.41156 * 22 20 18 26 26 C 1.40712 * 119.50929 * 359.76896 * 17 16 15 27 27 C 1.37621 * 119.74548 * 359.97438 * 26 17 16 28 28 C 1.46844 * 111.19863 * 61.74279 * 12 11 8 29 29 H 1.09003 * 109.46914 * 300.00325 * 1 2 3 30 30 H 1.08991 * 109.46780 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46781 * 59.99920 * 1 2 3 32 32 H 1.08993 * 109.52727 * 302.30585 * 7 5 3 33 33 H 1.09001 * 109.52620 * 62.50208 * 7 5 3 34 34 H 0.96698 * 114.00291 * 179.82590 * 10 8 7 35 35 H 1.08999 * 109.46155 * 180.80647 * 11 8 7 36 36 H 1.08999 * 109.45150 * 60.83272 * 11 8 7 37 37 H 1.09003 * 109.47442 * 185.79277 * 13 12 11 38 38 H 1.09003 * 109.46965 * 305.79055 * 13 12 11 39 39 H 1.08000 * 119.87057 * 359.97438 * 15 14 13 40 40 H 1.07995 * 120.12953 * 180.23461 * 16 15 14 41 41 H 0.97001 * 120.00153 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.12878 * 179.97438 * 26 17 16 43 43 H 1.08007 * 119.87552 * 179.97438 * 27 26 17 44 44 H 1.09006 * 109.46772 * 178.24214 * 28 12 11 45 45 H 1.08992 * 109.46652 * 58.27383 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9571 0.7796 -0.8883 7 6 4.1139 0.5855 1.2533 8 6 5.6388 0.7226 1.2765 9 1 6.0310 0.2709 2.1876 10 8 6.1954 0.0613 0.1384 11 6 6.0134 2.2059 1.2393 12 7 5.4673 2.8197 0.0223 13 6 5.9233 4.2092 -0.1168 14 6 7.4140 4.2292 -0.3365 15 6 8.2689 4.3058 0.7522 16 6 9.6320 4.3198 0.5637 17 6 10.1569 4.2664 -0.7409 18 6 11.5556 4.2847 -0.9470 19 1 11.9816 3.7858 -1.8050 20 6 12.3881 4.9491 -0.0394 21 7 13.6684 4.6821 -0.0096 22 14 11.6710 6.2172 1.1299 23 1 11.3707 5.5739 2.4342 24 1 12.6518 7.3137 1.3330 25 1 10.4208 6.7722 0.5521 26 6 9.2796 4.1942 -1.8386 27 6 7.9200 4.1761 -1.6261 28 6 4.0011 2.7423 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 -1.0276 0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 3.6925 1.0559 2.1416 33 1 3.8433 -0.4702 1.2359 34 1 7.1598 0.1105 0.0875 35 1 7.0988 2.3065 1.2412 36 1 5.6007 2.7065 2.1152 37 1 5.4243 4.6719 -0.9682 38 1 5.6824 4.7631 0.7906 39 1 7.8636 4.3512 1.7523 40 1 10.2962 4.3757 1.4133 41 1 14.2455 5.1430 0.6193 42 1 9.6716 4.1532 -2.8441 43 1 7.2447 4.1212 -2.4672 44 1 3.6247 3.2325 -0.8974 45 1 3.5979 3.2405 0.8821 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592194156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:11 Heat of formation + Delta-G solvation = -115.720138 kcal Electronic energy + Delta-G solvation = -27034.522120 eV Core-core repulsion = 23209.439825 eV Total energy + Delta-G solvation = -3825.082295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.91771 -39.27638 -37.80771 -36.72341 -35.69815 -34.02541 -33.11430 -30.67081 -30.16993 -29.67439 -28.03993 -27.04917 -24.69887 -23.84684 -22.41306 -21.65393 -20.98492 -19.96146 -19.78761 -17.78305 -17.43698 -17.14180 -16.78122 -16.43919 -15.66048 -15.54339 -14.93827 -14.71772 -14.45955 -14.04724 -13.83881 -13.74447 -13.55900 -13.38448 -13.10940 -13.00178 -12.82123 -12.40026 -12.33578 -11.99348 -11.83321 -11.49184 -11.36626 -11.27840 -11.06578 -11.04118 -10.87292 -10.78221 -10.60192 -10.32099 -10.23779 -9.82413 -9.72199 -9.55157 -9.14287 -8.09325 -7.70822 -7.51554 -6.96976 -4.49543 2.00352 2.40426 2.57301 2.69883 3.07849 3.19263 3.29870 3.95943 4.00835 4.29577 4.40442 4.57581 4.66226 4.78550 4.82486 4.89979 4.98849 5.01669 5.24536 5.26369 5.40456 5.42747 5.52617 5.58229 5.67315 5.72115 5.76740 5.93236 5.96885 6.05496 6.09511 6.10656 6.16010 6.21695 6.56547 6.82036 6.89730 7.16510 7.21825 7.25558 7.42372 7.54142 7.59528 7.81783 7.83744 7.87082 8.13011 8.34572 8.65156 8.79104 10.05575 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.028802 B = 0.002819 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.934711 B = 9928.511794 C =10114.706397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.467 3.533 4 O -0.509 6.509 5 C -0.071 4.071 6 H 0.127 0.873 7 C -0.103 4.103 8 C 0.113 3.887 9 H 0.061 0.939 10 O -0.554 6.554 11 C 0.016 3.984 12 N -0.519 5.519 13 C 0.120 3.880 14 C -0.208 4.208 15 C -0.071 4.071 16 C -0.239 4.239 17 C 0.095 3.905 18 C -0.448 4.448 19 H 0.090 0.910 20 C 0.084 3.916 21 N -0.809 5.809 22 Si 0.912 3.088 23 H -0.272 1.272 24 H -0.292 1.292 25 H -0.244 1.244 26 C -0.210 4.210 27 C -0.057 4.057 28 C 0.072 3.928 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.384 0.616 35 H 0.097 0.903 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.026 0.974 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.285 0.715 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.028 -7.428 3.955 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.310 3.690 4 O -0.397 6.397 5 C -0.091 4.091 6 H 0.145 0.855 7 C -0.141 4.141 8 C 0.054 3.946 9 H 0.079 0.921 10 O -0.360 6.360 11 C -0.112 4.112 12 N -0.243 5.243 13 C -0.006 4.006 14 C -0.210 4.210 15 C -0.090 4.090 16 C -0.258 4.258 17 C 0.092 3.908 18 C -0.476 4.476 19 H 0.108 0.892 20 C -0.135 4.135 21 N -0.433 5.433 22 Si 0.739 3.261 23 H -0.198 1.198 24 H -0.220 1.220 25 H -0.168 1.168 26 C -0.230 4.230 27 C -0.076 4.076 28 C -0.056 4.056 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.232 0.768 35 H 0.115 0.885 36 H 0.052 0.948 37 H 0.088 0.912 38 H 0.044 0.956 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.100 0.900 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -19.433 -7.496 3.496 21.120 hybrid contribution -0.040 1.209 1.433 1.875 sum -19.474 -6.286 4.928 21.048 Atomic orbital electron populations 1.23261 0.76585 1.03629 1.02485 1.86539 1.23213 1.33546 1.84025 1.23937 0.92111 0.81189 0.71753 1.90660 1.67315 1.36369 1.45334 1.21002 0.85570 0.99409 1.03072 0.85514 1.21566 0.94641 1.01796 0.96080 1.21700 0.92710 0.91214 0.89008 0.92102 1.86414 1.26352 1.76950 1.46302 1.22947 1.02518 0.94788 0.90958 1.61872 1.06270 1.18882 1.37297 1.20742 0.93985 0.86471 0.99391 1.18830 0.92168 1.16506 0.93449 1.20431 0.93483 0.99015 0.96083 1.20985 0.94173 1.14133 0.96551 1.17734 0.93489 0.88595 0.90945 1.19513 0.89694 1.29464 1.08966 0.89214 1.26160 0.94527 0.96850 0.95956 1.69701 1.05766 1.35535 1.32318 0.86302 0.79896 0.79788 0.80105 1.19813 1.21960 1.16759 1.21017 0.92544 1.11884 0.97530 1.20452 0.94690 0.97449 0.94982 1.21858 0.88922 0.92899 1.01939 0.92014 0.88115 0.91907 0.90705 0.89791 0.76835 0.88529 0.94759 0.91193 0.95608 0.89469 0.88428 0.90495 0.88299 0.88814 0.90009 0.94529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.80 10.50 -39.25 -0.41 -4.21 16 3 C 0.47 5.67 7.26 36.01 0.26 5.93 16 4 O -0.51 -7.33 15.73 -18.75 -0.29 -7.62 16 5 C -0.07 -0.84 2.64 -91.69 -0.24 -1.08 16 6 H 0.13 1.60 7.80 -51.93 -0.41 1.19 16 7 C -0.10 -1.08 4.95 -26.61 -0.13 -1.22 16 8 C 0.11 1.29 3.80 -26.65 -0.10 1.19 16 9 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 10 O -0.55 -7.06 12.66 -35.23 -0.45 -7.51 16 11 C 0.02 0.22 4.82 -3.84 -0.02 0.20 16 12 N -0.52 -7.51 4.53 -236.12 -1.07 -8.58 16 13 C 0.12 1.91 5.11 -4.98 -0.03 1.88 16 14 C -0.21 -3.97 4.90 -104.33 -0.51 -4.48 16 15 C -0.07 -1.44 7.84 -39.66 -0.31 -1.75 16 16 C -0.24 -5.52 7.18 -38.87 -0.28 -5.80 16 17 C 0.10 2.35 5.10 -106.83 -0.55 1.80 16 18 C -0.45 -11.90 9.57 -37.75 -0.36 -12.26 16 19 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 20 C 0.08 2.17 5.40 -17.34 -0.09 2.07 16 21 N -0.81 -21.34 13.93 55.55 0.77 -20.57 16 22 Si 0.91 20.58 24.52 -169.99 -4.17 16.42 16 23 H -0.27 -5.94 6.71 56.52 0.38 -5.56 16 24 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 25 H -0.24 -5.66 6.86 56.52 0.39 -5.27 16 26 C -0.21 -4.75 9.80 -38.87 -0.38 -5.14 16 27 C -0.06 -1.15 9.67 -39.66 -0.38 -1.53 16 28 C 0.07 0.94 4.04 -3.83 -0.02 0.93 16 29 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.38 4.24 9.08 45.56 0.41 4.66 16 35 H 0.10 1.46 5.76 -51.93 -0.30 1.16 16 36 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 1.07 7.93 -51.93 -0.41 0.65 16 38 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16 39 H 0.09 1.57 7.97 -52.49 -0.42 1.16 16 40 H 0.10 2.28 4.73 -52.49 -0.25 2.03 16 41 H 0.28 6.80 8.30 -40.82 -0.34 6.47 16 42 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 43 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 44 H 0.08 1.10 7.99 -51.93 -0.42 0.68 16 45 H 0.04 0.49 8.08 -51.93 -0.42 0.07 16 LS Contribution 362.02 15.07 5.46 5.46 Total: -1.00 -28.98 362.02 -8.25 -37.23 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.02 Total: 7.32 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -2.07 Total: -17.94 kcal Atomic # 7 Polarization: -28.86 SS G_CDS: -0.30 Total: -29.15 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -1.15 Total: -19.34 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.17 Total: 16.42 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.98 -8.25 -37.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592194156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.486 kcal (2) G-P(sol) polarization free energy of solvation -28.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds