Wall clock time and date at job start Tue Mar 31 2020 12:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34228 * 116.99564 * 2 1 4 4 O 1.20822 * 120.00827 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99660 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.50337 * 59.92330 * 5 3 2 7 7 C 1.53114 * 109.50325 * 299.80453 * 5 3 2 8 8 C 1.53120 * 109.15966 * 182.40339 * 7 5 3 9 9 H 1.09002 * 109.50704 * 177.59461 * 8 7 5 10 10 O 1.42904 * 109.53894 * 297.69435 * 8 7 5 11 11 C 1.53038 * 109.27843 * 57.65417 * 8 7 5 12 12 N 1.46839 * 109.52345 * 300.82092 * 11 8 7 13 13 C 1.46901 * 111.00117 * 185.84144 * 12 11 8 14 14 C 1.50691 * 109.47374 * 65.78755 * 13 12 11 15 15 C 1.38640 * 119.75265 * 269.72715 * 14 13 12 16 16 C 1.37612 * 120.25043 * 179.76299 * 15 14 13 17 17 C 1.40723 * 119.74565 * 0.48790 * 16 15 14 18 18 C 1.41390 * 120.24467 * 179.78769 * 17 16 15 19 19 H 1.08000 * 120.00029 * 150.20980 * 18 17 16 20 20 C 1.39939 * 120.00232 * 330.21042 * 18 17 16 21 21 N 1.30823 * 120.00396 * 161.73172 * 20 18 17 22 22 Si 1.86799 * 119.99920 * 341.73220 * 20 18 17 23 23 H 1.48507 * 109.47099 * 95.41406 * 22 20 18 24 24 H 1.48507 * 109.47235 * 215.41040 * 22 20 18 25 25 H 1.48494 * 109.47451 * 335.41156 * 22 20 18 26 26 C 1.40712 * 119.50929 * 359.76896 * 17 16 15 27 27 C 1.37621 * 119.74548 * 359.97438 * 26 17 16 28 28 C 1.46844 * 111.19863 * 61.74279 * 12 11 8 29 29 H 1.09003 * 109.46914 * 300.00325 * 1 2 3 30 30 H 1.08991 * 109.46780 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46781 * 59.99920 * 1 2 3 32 32 H 1.08993 * 109.52727 * 302.30585 * 7 5 3 33 33 H 1.09001 * 109.52620 * 62.50208 * 7 5 3 34 34 H 0.96698 * 114.00291 * 179.82590 * 10 8 7 35 35 H 1.08999 * 109.46155 * 180.80647 * 11 8 7 36 36 H 1.08999 * 109.45150 * 60.83272 * 11 8 7 37 37 H 1.09003 * 109.47442 * 185.79277 * 13 12 11 38 38 H 1.09003 * 109.46965 * 305.79055 * 13 12 11 39 39 H 1.08000 * 119.87057 * 359.97438 * 15 14 13 40 40 H 1.07995 * 120.12953 * 180.23461 * 16 15 14 41 41 H 0.97001 * 120.00153 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.12878 * 179.97438 * 26 17 16 43 43 H 1.08007 * 119.87552 * 179.97438 * 27 26 17 44 44 H 1.09006 * 109.46772 * 178.24214 * 28 12 11 45 45 H 1.08992 * 109.46652 * 58.27383 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9571 0.7796 -0.8883 7 6 4.1139 0.5855 1.2533 8 6 5.6388 0.7226 1.2765 9 1 6.0310 0.2709 2.1876 10 8 6.1954 0.0613 0.1384 11 6 6.0134 2.2059 1.2393 12 7 5.4673 2.8197 0.0223 13 6 5.9233 4.2092 -0.1168 14 6 7.4140 4.2292 -0.3365 15 6 8.2689 4.3058 0.7522 16 6 9.6320 4.3198 0.5637 17 6 10.1569 4.2664 -0.7409 18 6 11.5556 4.2847 -0.9470 19 1 11.9816 3.7858 -1.8050 20 6 12.3881 4.9491 -0.0394 21 7 13.6684 4.6821 -0.0096 22 14 11.6710 6.2172 1.1299 23 1 11.3707 5.5739 2.4342 24 1 12.6518 7.3137 1.3330 25 1 10.4208 6.7722 0.5521 26 6 9.2796 4.1942 -1.8386 27 6 7.9200 4.1761 -1.6261 28 6 4.0011 2.7423 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 -1.0276 0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 3.6925 1.0559 2.1416 33 1 3.8433 -0.4702 1.2359 34 1 7.1598 0.1105 0.0875 35 1 7.0988 2.3065 1.2412 36 1 5.6007 2.7065 2.1152 37 1 5.4243 4.6719 -0.9682 38 1 5.6824 4.7631 0.7906 39 1 7.8636 4.3512 1.7523 40 1 10.2962 4.3757 1.4133 41 1 14.2455 5.1430 0.6193 42 1 9.6716 4.1532 -2.8441 43 1 7.2447 4.1212 -2.4672 44 1 3.6247 3.2325 -0.8974 45 1 3.5979 3.2405 0.8821 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592194156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:11 Heat of formation + Delta-G solvation = -135.344647 kcal Electronic energy + Delta-G solvation = -27035.373103 eV Core-core repulsion = 23209.439825 eV Total energy + Delta-G solvation = -3825.933277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.83805 -40.40897 -39.34727 -37.61148 -36.82845 -35.60018 -34.45482 -32.26683 -31.52051 -31.02627 -28.86326 -28.40723 -25.93483 -25.03626 -23.66912 -23.23561 -22.11508 -21.53460 -20.73282 -19.32034 -18.69953 -18.09567 -17.67566 -17.39940 -17.34437 -16.52937 -16.33143 -15.91898 -15.61144 -15.52082 -15.30908 -14.91027 -14.69952 -14.56666 -14.33389 -14.13926 -14.05007 -13.88576 -13.65634 -13.13711 -13.02513 -12.89949 -12.66090 -12.48114 -12.42783 -12.33214 -12.01923 -11.94894 -11.87114 -11.77266 -11.57356 -11.40642 -11.17431 -10.95150 -10.66599 -9.46444 -9.36211 -9.11457 -8.87656 -6.46029 0.77668 0.93607 1.08498 1.26336 1.40721 1.49658 1.66953 2.12981 2.56670 3.04883 3.42557 3.50079 3.64163 3.76418 3.87606 3.99225 4.13851 4.22788 4.28747 4.30996 4.32880 4.34046 4.44679 4.51397 4.56611 4.69558 4.71009 4.71236 4.78518 4.80158 4.84717 4.95202 5.06265 5.08317 5.13336 5.16737 5.33148 5.36694 5.65714 5.78424 5.95290 6.04325 6.15575 6.21976 6.31006 6.46336 6.65994 6.79036 6.87768 6.95600 8.21277 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.028802 B = 0.002819 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.934711 B = 9928.511794 C =10114.706397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.473 3.527 4 O -0.536 6.536 5 C -0.066 4.066 6 H 0.119 0.881 7 C -0.099 4.099 8 C 0.114 3.886 9 H 0.082 0.918 10 O -0.569 6.569 11 C 0.015 3.985 12 N -0.528 5.528 13 C 0.121 3.879 14 C -0.180 4.180 15 C -0.071 4.071 16 C -0.247 4.247 17 C 0.074 3.926 18 C -0.487 4.487 19 H 0.053 0.947 20 C 0.046 3.954 21 N -0.854 5.854 22 Si 0.967 3.033 23 H -0.258 1.258 24 H -0.281 1.281 25 H -0.253 1.253 26 C -0.222 4.222 27 C -0.058 4.058 28 C 0.077 3.923 29 H 0.063 0.937 30 H 0.131 0.869 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.388 0.612 35 H 0.078 0.922 36 H 0.046 0.954 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.117 0.883 40 H 0.094 0.906 41 H 0.292 0.708 42 H 0.096 0.904 43 H 0.119 0.881 44 H 0.077 0.923 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.512 -7.731 5.607 24.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.317 3.683 4 O -0.425 6.425 5 C -0.086 4.086 6 H 0.137 0.863 7 C -0.137 4.137 8 C 0.055 3.945 9 H 0.100 0.900 10 O -0.376 6.376 11 C -0.113 4.113 12 N -0.252 5.252 13 C -0.005 4.005 14 C -0.181 4.181 15 C -0.089 4.089 16 C -0.266 4.266 17 C 0.072 3.928 18 C -0.517 4.517 19 H 0.071 0.929 20 C -0.167 4.167 21 N -0.480 5.480 22 Si 0.790 3.210 23 H -0.183 1.183 24 H -0.208 1.208 25 H -0.177 1.177 26 C -0.241 4.241 27 C -0.077 4.077 28 C -0.051 4.051 29 H 0.082 0.918 30 H 0.150 0.850 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.237 0.763 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.135 0.865 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.114 0.886 43 H 0.137 0.863 44 H 0.095 0.905 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -22.925 -7.827 5.146 24.764 hybrid contribution 0.728 1.179 0.842 1.621 sum -22.197 -6.648 5.989 23.932 Atomic orbital electron populations 1.23568 0.74764 1.05747 1.02548 1.86523 1.24994 1.32604 1.83490 1.23902 0.92118 0.81221 0.71030 1.90653 1.67878 1.37252 1.46750 1.20901 0.85593 0.98583 1.03502 0.86340 1.21592 0.93903 1.02345 0.95858 1.21806 0.93276 0.89962 0.89453 0.90012 1.86401 1.26932 1.77132 1.47120 1.22989 1.01325 0.96180 0.90850 1.61765 1.07352 1.17732 1.38342 1.20713 0.91377 0.87843 1.00593 1.19275 0.94234 1.12025 0.92596 1.20723 0.92325 0.97892 0.97971 1.21073 0.95572 1.14351 0.95627 1.17850 0.92879 0.89686 0.92406 1.19476 0.91225 1.31965 1.09040 0.92913 1.26809 0.94695 0.97986 0.97244 1.69734 1.06806 1.37344 1.34147 0.85474 0.78872 0.77879 0.78744 1.18283 1.20809 1.17710 1.21174 0.93699 1.12098 0.97153 1.20743 0.93878 0.96503 0.96562 1.21795 0.87693 0.93812 1.01785 0.91799 0.85044 0.92054 0.89336 0.88916 0.76300 0.90335 0.93543 0.90143 0.94343 0.86493 0.88832 0.89754 0.88581 0.86341 0.90489 0.94349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.36 -6.74 10.50 -51.40 -0.54 -7.28 16 3 C 0.47 10.38 7.26 71.24 0.52 10.89 16 4 O -0.54 -14.34 15.73 21.98 0.35 -14.00 16 5 C -0.07 -1.39 2.64 -11.49 -0.03 -1.42 16 6 H 0.12 2.73 7.80 -2.39 -0.02 2.71 16 7 C -0.10 -1.76 4.95 30.67 0.15 -1.61 16 8 C 0.11 2.24 3.80 30.65 0.12 2.36 16 9 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 10 O -0.57 -13.22 12.66 -148.98 -1.89 -15.10 16 11 C 0.01 0.34 4.82 86.33 0.42 0.76 16 12 N -0.53 -13.57 4.53 -900.96 -4.08 -17.65 16 13 C 0.12 3.40 5.11 85.55 0.44 3.83 16 14 C -0.18 -6.33 4.90 -19.68 -0.10 -6.43 16 15 C -0.07 -2.66 7.84 22.22 0.17 -2.49 16 16 C -0.25 -11.20 7.18 22.73 0.16 -11.04 16 17 C 0.07 3.73 5.10 -21.29 -0.11 3.62 16 18 C -0.49 -27.39 9.57 23.46 0.22 -27.16 16 19 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 20 C 0.05 2.50 5.40 85.26 0.46 2.96 16 21 N -0.85 -47.14 13.93 21.82 0.30 -46.83 16 22 Si 0.97 42.78 24.52 68.60 1.68 44.46 16 23 H -0.26 -10.67 6.71 99.48 0.67 -10.00 16 24 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.25 -11.42 6.86 99.48 0.68 -10.74 16 26 C -0.22 -10.09 9.80 22.73 0.22 -9.86 16 27 C -0.06 -2.24 9.67 22.22 0.21 -2.03 16 28 C 0.08 1.79 4.04 86.33 0.35 2.14 16 29 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 30 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.39 7.98 9.08 -74.06 -0.67 7.31 16 35 H 0.08 2.13 5.76 -2.39 -0.01 2.11 16 36 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 2.13 7.93 -2.39 -0.02 2.11 16 38 H 0.04 1.01 8.06 -2.39 -0.02 0.99 16 39 H 0.12 3.75 7.97 -2.91 -0.02 3.72 16 40 H 0.09 4.29 4.73 -2.91 -0.01 4.27 16 41 H 0.29 14.49 8.30 -92.71 -0.77 13.72 16 42 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 43 H 0.12 3.98 8.06 -2.91 -0.02 3.95 16 44 H 0.08 1.87 7.99 -2.38 -0.02 1.85 16 45 H 0.04 0.89 8.08 -2.39 -0.02 0.87 16 Total: -1.00 -64.16 362.02 0.50 -63.67 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.26 Total: 26.68 kcal Atomic # 6 Polarization: -38.35 SS G_CDS: 4.41 Total: -33.94 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: -3.78 Total: -64.48 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -2.08 Total: -36.38 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.68 Total: 44.46 kcal Total: -64.16 0.50 -63.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592194156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.678 kcal (2) G-P(sol) polarization free energy of solvation -64.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds