Wall clock time and date at job start Tue Mar 31 2020 12:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99960 * 2 1 4 4 H 1.08994 * 109.47181 * 29.99642 * 3 2 1 5 5 C 1.53000 * 109.46563 * 269.99359 * 3 2 1 6 6 C 1.50703 * 109.47241 * 63.15571 * 5 3 2 7 7 C 1.38228 * 119.99919 * 269.72652 * 6 5 3 8 8 C 1.38238 * 120.00062 * 179.74224 * 7 6 5 9 9 C 1.38241 * 119.99763 * 0.52430 * 8 7 6 10 10 C 1.38238 * 119.99920 * 359.75114 * 9 8 7 11 11 C 1.38230 * 119.99933 * 359.97345 * 10 9 8 12 12 C 1.50700 * 109.47107 * 149.99757 * 3 2 1 13 13 O 1.21283 * 119.99953 * 10.03975 * 12 3 2 14 14 N 1.34770 * 120.00058 * 190.03646 * 12 3 2 15 15 C 1.47027 * 125.64730 * 5.06372 * 14 12 3 16 16 C 1.54337 * 107.26549 * 178.85036 * 15 14 12 17 17 C 1.55159 * 103.01840 * 338.13808 * 16 15 14 18 18 O 1.42903 * 111.00666 * 277.23356 * 17 16 15 19 19 C 1.50700 * 111.03502 * 153.39965 * 17 16 15 20 20 H 1.08001 * 120.00031 * 247.78553 * 19 17 16 21 21 C 1.37879 * 120.00179 * 67.78196 * 19 17 16 22 22 N 1.31512 * 119.99875 * 0.02562 * 21 19 17 23 23 Si 1.86796 * 120.00066 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47073 * 90.00308 * 23 21 19 25 25 H 1.48499 * 109.47485 * 210.00357 * 23 21 19 26 26 H 1.48495 * 109.47334 * 330.00443 * 23 21 19 27 27 C 1.47431 * 125.65127 * 185.36892 * 14 12 3 28 28 H 1.09004 * 109.47641 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47412 * 300.00737 * 1 2 3 30 30 H 1.09003 * 109.47138 * 60.00112 * 1 2 3 31 31 H 1.09001 * 109.46950 * 183.15470 * 5 3 2 32 32 H 1.09000 * 109.47540 * 303.15286 * 5 3 2 33 33 H 1.07999 * 120.00463 * 359.97438 * 7 6 5 34 34 H 1.07992 * 120.00314 * 180.29294 * 8 7 6 35 35 H 1.07998 * 120.00051 * 179.76610 * 9 8 7 36 36 H 1.07994 * 119.99721 * 179.97438 * 10 9 8 37 37 H 1.08006 * 120.00315 * 180.02562 * 11 10 9 38 38 H 1.09006 * 109.87968 * 298.39071 * 15 14 12 39 39 H 1.08993 * 109.88448 * 59.55528 * 15 14 12 40 40 H 1.08998 * 110.84904 * 219.67637 * 16 15 14 41 41 H 1.08996 * 110.52023 * 96.45289 * 16 15 14 42 42 H 0.96706 * 113.99946 * 292.20612 * 18 17 16 43 43 H 0.97001 * 120.00079 * 179.97438 * 22 21 19 44 44 H 1.08996 * 110.36220 * 322.93482 * 27 14 12 45 45 H 1.08997 * 110.36228 * 85.14798 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2177 1.7712 -1.4425 6 6 0.8817 1.8871 -2.1302 7 6 0.3559 0.8021 -2.8062 8 6 -0.8720 0.9067 -3.4324 9 6 -1.5692 2.0998 -3.3917 10 6 -1.0407 3.1866 -2.7205 11 6 0.1846 3.0802 -2.0895 12 6 3.3386 1.2639 0.7105 13 8 3.8329 0.1977 1.0102 14 7 3.9773 2.4115 1.0127 15 6 3.4480 3.7673 0.8042 16 6 4.5110 4.7588 1.3229 17 6 5.3445 3.8950 2.3060 18 8 4.7147 3.8249 3.5868 19 6 6.7520 4.4196 2.4274 20 1 7.5791 3.8404 2.0441 21 6 6.9839 5.6390 3.0276 22 7 5.9768 6.3440 3.4948 23 14 8.7286 6.2889 3.1787 24 1 9.0616 7.0967 1.9779 25 1 8.8373 7.1380 4.3922 26 1 9.6740 5.1489 3.2861 27 6 5.3249 2.5155 1.6015 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 2.7121 2.7426 -1.4431 32 1 2.8375 1.0478 -1.9724 33 1 0.9027 -0.1286 -2.8419 34 1 -1.2850 0.0576 -3.9565 35 1 -2.5268 2.1827 -3.8842 36 1 -1.5851 4.1187 -2.6891 37 1 0.5974 3.9291 -1.5647 38 1 3.2681 3.9357 -0.2577 39 1 2.5214 3.8937 1.3639 40 1 4.0417 5.5927 1.8449 41 1 5.1323 5.1168 0.5020 42 1 4.7027 4.6650 4.0657 43 1 6.1399 7.2017 3.9174 44 1 5.4849 1.7171 2.3260 45 1 6.0841 2.4759 0.8204 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592854187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:30 Heat of formation + Delta-G solvation = -96.573790 kcal Electronic energy + Delta-G solvation = -27556.683776 eV Core-core repulsion = 23732.431729 eV Total energy + Delta-G solvation = -3824.252047 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.31418 -39.24129 -37.79301 -36.74467 -34.43186 -33.26894 -32.17299 -31.14059 -30.36773 -29.30283 -28.21563 -26.34942 -25.49193 -24.03936 -22.77531 -22.21656 -21.16550 -19.82880 -19.01251 -17.33982 -17.15889 -16.90611 -16.42964 -15.83420 -15.21982 -15.16391 -15.01810 -14.95535 -14.76418 -14.30678 -13.75105 -13.62921 -13.44744 -13.15146 -13.04811 -12.87697 -12.66348 -12.13275 -12.03485 -11.94138 -11.63679 -11.40241 -11.36339 -11.28152 -11.22020 -11.00476 -10.88737 -10.59013 -10.51515 -10.08325 -10.02784 -9.47057 -9.31850 -9.07651 -8.72558 -8.59814 -8.24956 -8.02327 -6.33733 -4.41366 1.12172 1.20043 2.98280 3.11328 3.17137 3.25292 3.30036 3.58862 4.08489 4.23718 4.49840 4.66947 4.80350 4.89723 4.92246 4.95190 5.02319 5.04698 5.21441 5.31722 5.36648 5.42523 5.46290 5.50000 5.67474 5.69253 5.75546 5.79367 5.86750 5.88466 6.03771 6.21788 6.27235 6.31824 6.40446 6.44545 6.61890 6.79902 6.81366 6.88894 7.11545 7.24982 7.27948 7.69838 7.94929 8.07253 8.58861 8.63235 9.27801 9.44539 10.73981 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.022106 B = 0.003153 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.334810 B = 8879.613340 C = 9541.758966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.355 6.355 3 C 0.086 3.914 4 H 0.082 0.918 5 C -0.103 4.103 6 C -0.080 4.080 7 C -0.105 4.105 8 C -0.124 4.124 9 C -0.124 4.124 10 C -0.120 4.120 11 C -0.117 4.117 12 C 0.525 3.475 13 O -0.531 6.531 14 N -0.605 5.605 15 C 0.096 3.904 16 C -0.139 4.139 17 C 0.249 3.751 18 O -0.584 6.584 19 C -0.535 4.535 20 H 0.066 0.934 21 C 0.072 3.928 22 N -0.898 5.898 23 Si 0.904 3.096 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.272 1.272 27 C 0.120 3.880 28 H 0.085 0.915 29 H 0.038 0.962 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.385 0.615 43 H 0.269 0.731 44 H 0.072 0.928 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.492 -3.641 -12.340 19.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.272 6.272 3 C 0.025 3.975 4 H 0.100 0.900 5 C -0.141 4.141 6 C -0.080 4.080 7 C -0.123 4.123 8 C -0.142 4.142 9 C -0.142 4.142 10 C -0.138 4.138 11 C -0.135 4.135 12 C 0.311 3.689 13 O -0.408 6.408 14 N -0.339 5.339 15 C -0.027 4.027 16 C -0.177 4.177 17 C 0.209 3.791 18 O -0.394 6.394 19 C -0.573 4.573 20 H 0.084 0.916 21 C -0.130 4.130 22 N -0.538 5.538 23 Si 0.732 3.268 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.196 1.196 27 C -0.001 4.001 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.238 0.762 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.279 -4.921 -12.268 19.458 hybrid contribution 0.621 1.417 0.220 1.563 sum -13.657 -3.505 -12.048 18.546 Atomic orbital electron populations 1.23224 0.81148 1.02964 1.00950 1.88012 1.19328 1.25051 1.94843 1.21828 0.94048 0.86692 0.94956 0.89976 1.21153 0.94837 1.03724 0.94375 1.19811 0.96215 0.93915 0.98096 1.21114 0.95880 0.98512 0.96751 1.21154 0.95206 0.97880 1.00003 1.21157 0.99951 0.93375 0.99764 1.21144 0.95883 0.98780 0.97950 1.21148 0.95172 0.97378 0.99762 1.19800 0.85871 0.83299 0.79884 1.90682 1.67370 1.29052 1.53685 1.48528 1.18814 1.05226 1.61358 1.22284 0.98744 0.82697 0.98987 1.23213 0.96329 0.97713 1.00495 1.19570 0.90658 0.87803 0.81102 1.86112 1.81536 1.39658 1.32107 1.21480 0.92411 1.03989 1.39446 0.91591 1.24991 0.97895 0.96077 0.94048 1.69557 1.30753 1.14076 1.39392 0.86388 0.83882 0.78865 0.77694 1.20448 1.21008 1.19648 1.22412 0.81354 0.99925 0.96426 0.89653 0.94333 0.92257 0.88859 0.89393 0.85642 0.86081 0.86252 0.86018 0.85740 0.92659 0.92409 0.89795 0.91267 0.76243 0.92054 0.90936 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 10.19 101.05 1.03 1.19 16 2 O -0.35 -5.58 9.73 -54.94 -0.53 -6.12 16 3 C 0.09 1.31 2.14 -27.88 -0.06 1.25 16 4 H 0.08 1.14 7.56 -51.93 -0.39 0.75 16 5 C -0.10 -1.29 4.99 -27.88 -0.14 -1.43 16 6 C -0.08 -0.88 3.76 -104.62 -0.39 -1.27 16 7 C -0.10 -1.06 6.90 -39.58 -0.27 -1.33 16 8 C -0.12 -1.08 9.92 -39.58 -0.39 -1.47 16 9 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 10 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 11 C -0.12 -1.16 9.70 -39.58 -0.38 -1.54 16 12 C 0.53 10.25 7.17 -10.99 -0.08 10.17 16 13 O -0.53 -12.45 16.76 -14.15 -0.24 -12.69 16 14 N -0.60 -11.79 3.33 -170.51 -0.57 -12.36 16 15 C 0.10 1.63 6.15 -3.05 -0.02 1.61 16 16 C -0.14 -2.84 5.64 -24.89 -0.14 -2.98 16 17 C 0.25 5.89 0.89 -89.62 -0.08 5.81 16 18 O -0.58 -14.82 13.18 -35.23 -0.46 -15.29 16 19 C -0.53 -13.60 8.25 -34.44 -0.28 -13.88 16 20 H 0.07 1.67 7.77 -52.49 -0.41 1.26 16 21 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 22 N -0.90 -22.58 10.79 55.43 0.60 -21.98 16 23 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 C 0.12 2.66 6.10 -2.53 -0.02 2.64 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.04 0.43 8.09 -51.93 -0.42 0.01 16 30 H 0.06 0.64 3.90 -51.93 -0.20 0.43 16 31 H 0.09 1.11 5.64 -51.93 -0.29 0.82 16 32 H 0.09 1.15 8.08 -51.93 -0.42 0.73 16 33 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 34 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 38 H 0.06 0.77 5.99 -51.93 -0.31 0.46 16 39 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 40 H 0.08 1.80 7.85 -51.93 -0.41 1.39 16 41 H 0.07 1.40 8.03 -51.93 -0.42 0.99 16 42 H 0.39 9.84 6.93 45.56 0.32 10.16 16 43 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 44 H 0.07 1.73 7.99 -51.93 -0.41 1.32 16 45 H 0.07 1.52 8.02 -51.93 -0.42 1.11 16 LS Contribution 362.52 15.07 5.46 5.46 Total: -1.00 -29.71 362.52 -8.76 -38.47 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -5.88 Total: 12.13 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -2.12 Total: -2.41 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.03 Total: -34.34 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -1.24 Total: -34.09 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.71 -8.76 -38.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.104 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds